Module 413 Residual: 0.56
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.56 | 0.00000047 | 75 | 80 | 26 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 0.00000047 | |
| Motif 2 |
 |
| e-value: 75 |
| MSMEG_6916 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.236) | MSMEG_3143 Aconitate hydratase A (ACN) (Aconitase) (EC 4.2.1.3) ((2R,3S)-2-methylisocitrate dehydratase) ((2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase) (Iron-responsive protein-like) (IRP-like) (Probable 2-methyl-cis-aconitate hydratase) (EC 4.2.1.99) (RNA-binding protein) |
| MSMEG_6914 Uncharacterized protein | MSMEG_4169 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Short-chain dehydrogenase/reductase SDR) |
| MSMEG_4815 Thioesterase (Uncharacterized protein) | MSMEG_4168 Acetate CoA-transferase YdiF (EC 2.8.3.8) |
| MSMEG_5368 Ectoine/hydroxyectoine ABC transporter solute-binding protein | MSMEG_5371 ABC amino acid transporter, ATPase component (EC 3.6.3.21) (Ectoine/hydroxyectoine ABC transporter, ATP-binding protein) |
| MSMEG_5369 ABC amino acid transporter, permease component (Ectoine/hydroxyectoine ABC transporter, permease protein EhuC) | MSMEG_5370 ABC amino acid transporter, permease component (Ectoine/hydroxyectoine ABC transporter, permease protein EhuD) |
| MSMEG_4527 Ferredoxin sulfite reductase (EC 1.8.7.1) (Ferredoxin-nitrite reductase) (EC 1.-.-.-) | MSMEG_2130 Acyl-CoA dehydrogenase FadE14 (Putative acyl-CoA dehydrogenase) |
| MSMEG_4528 Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8) | MSMEG_2131 AMP-dependent synthetase and ligase (EC 6.2.1.20) (Acyl-CoA synthase) |
| MSMEG_4529 Secreted protein | MSMEG_2132 Acyl carrier protein Acp (Acyl carrier protein mbtL) |
| MSMEG_4814 Uncharacterized protein | MSMEG_4167 Alcohol dehydrogenase B (EC 1.1.1.1) (Zinc-type alcohol dehydrogenase AdhD) (EC 1.1.1.1) |
| MSMEG_4816 6-phosphogluconate dehydrogenase NAD-binding protein (EC 1.1.1.31) (6-phosphogluconate dehydrogenase, NAD-binding) | MSMEG_4166 Acyl-CoA dehydrogenase (EC 1.3.8.4) |
| MSMEG_4811 Uncharacterized protein | MSMEG_0778 Putative transcriptional regulator (Transcription regulator, GntR family) |
| MSMEG_3144 Putative membrane protein (Uncharacterized protein) | MSMEG_0779 Short-chain dehydrogenase/reductase SDR |
| MSMEG_3142 HTH-type transcriptional repressor AcnR (Transcriptional regulator, TetR family) | MSMEG_4525 Oxygen-independent coproporphyrinogen III oxidase HemN (EC 1.3.99.22) (Putative oxygen-independent coproporphyrinogen III oxidase) (EC 1.3.99.22) |
KO_stationary.phase_rep2
WT.vs..DamtR.without.N_rep1
KO_log.phase_rep1
Biological.replicate.4.of.6..isoniazid.treatment
Biological.replicate.2.of.6..isoniazid.treatment
Biological.replicate.5.of.6..isoniazid.treatment
Biological.replicate.3.of.7..ethambutol.treatment
MB100pruR.vs..MB100..rep.3
dosR.WT_Replicate2
dosR.WT_Replicate1
KO_log.phase_rep2
Wild.type.rep2.y
Biological.replicate.7.of.7..falcarinol.treatment
Biological.replicate.3.of.7..panaxydol.treatment
MB100pruR.vs..MB100.rep.2
WT.vs..DamtR.without.N_.dyeswap_rep1
WT.vs..DamtR.without.N_.dyeswap_rep2
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.3.of.7..falcarinol.treatment
rel.knockout.rep1
Biological.replicate.6.of.6..negative.control
Biological.replicate.6.of.7..falcarinol.treatment
M..smegmatis.Acid.NO.treated
mc2155.vs.Dcrp1.replicate.3
Biological.replicate.4.of.6..kanamycin.treatment
DamtR.with.vs..DamtR.without.N_.rep2
X0.6..vs..50..air.saturation.Replicate.1
X3dbfcy5plogcy3slide601norm
X0.6..vs..50..air.saturation.Replicate.3
X0.6..vs..50..air.saturation.Replicate.2
X0.6..vs..50..air.saturation.Replicate.5
Biological.replicate.6.of.7..ethambutol.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
mc2155.vs.Dcrp1.replicate.2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
mc2155.vs.Dcrp1.replicate.1
Biological.replicate.1.of.7..panaxydol.treatment
X0.6..vs..50..air.saturation.Replicate.4
Biological.replicate.5.of.7..panaxydol.treatment
dcpA.knockout.rep1
Biological.replicate.2.of.7..falcarinol.treatment
stphcy5plogcy3slide580norm
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
Biological.replicate.2.of.7..ethambutol.treatment
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.2
Biological.replicate.2.of.7..panaxydol.treatment
WT_stationary.phase_rep1
X4XR.rep2
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
Biological.replicate.5.of.7..ethambutol.treatment
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Bedaquiline.vs..DMSO.60min
Biological.replicate.4.of.7..falcarinol.treatment
Slow.vs..Fast.Replicate.2
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
Biological.replicate.5.of.6..negative.control
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
X4dbfcy5plogcy3slide901norm
WT.vs..DamtR.N.surplus_dyeswap_rep2
Biological.replicate.3.of.6..kanamycin.treatment
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
WT.vs..DglnR.N_starvation_dye.swap_rep2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
BatchCulture_LBTbroth_StationaryPhase_Replicate3
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
X4dbfcy3plogcy5slide903norm
WT.vs..DamtR.N.surplus_rep2
Comments
Log in to post comments