Module 444 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	0.00000000029	0.000041	82	22	20160204

Motifs

Motif 1
	e-value: 0.00000000029
Motif 2
	e-value: 0.000041

Module Plots

Members

MSMEG_4873 Enoyl-CoA hydratase/isomerase	MSMEG_4578 Uncharacterized protein
MSMEG_6016 Putative acyl-CoA dehydrogenase	MSMEG_4579 Phosphoglycerate mutase (EC 5.4.2.-) (Phosphoglycerate mutase family protein)
MSMEG_6015 Acyl-CoA dehydrogenase FadE32 (Putative acyl-CoA dehydrogenase)	MSMEG_4577 DegV family protein
MSMEG_6014 Acyl-CoA dehydrogenase (EC 1.3.99.-) (Putative acyl-CoA dehydrogenase)	MSMEG_3021 AAA ATPase, central region (Conserved hypothetical alanine leucine valine rich protein) (EC 2.7.7.7)
MSMEG_4875 Putative acyl-CoA dehydrogenase	MSMEG_0915 Polyphosphate kinase 2 superfamily protein
MSMEG_4874 Acyl-CoA dehydrogenase (Putative acyl-CoA dehydrogenase)	MSMEG_3457 DoxD family protein/pyridine nucleotide-disulfide oxidoreductase
MSMEG_4581 Probable nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) (Deamido-NAD(+) diphosphorylase) (Deamido-NAD(+) pyrophosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase)	MSMEG_2114 Glucose-6-phosphate isomerase, putative (EC 5.3.1.9) (Uncharacterized protein)
MSMEG_4580 Ribosomal silencing factor RsfS	MSMEG_2113 Uncharacterized protein
MSMEG_6332 Amino acid ABC transporter, permease protein (Binding-protein-dependent transport systems inner membrane component)	MSMEG_2150
MSMEG_6333 Amino acid ABC transporter, ATP-binding protein (Osmoprotectant (Glycine betaine/carnitine/choline/L-proline) transport ATP-binding protein ABC transporter proV) (EC 3.6.3.32)	MSMEG_2151
MSMEG_6331 ABC transporter, permease protein ProZ (Binding-protein-dependent transport systems inner membrane component)	MSMEG_6583 Antigen 85-C (EC 2.3.1.-) (Putative esterase)

Conditions

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

X4XR.rep1

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Wild.type.rep2.x

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.1.of.6..negative.control

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

Wild.type.rep2.y

Plogcy5plogcy3slide110norm

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

rel.knockout.rep2

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

X0.6..vs..50..air.saturation.Replicate.4

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

Plogcy5plogcy3slide113norm

Biological.replicate.5.of.6..kanamycin.treatment

X3dbfcy3plogcy5slide607norm

mc2155.vs.Dcrp1.replicate.4

WT.vs..DamtR.N.surplus_rep2

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

Biological.replicate.2.of.6..isoniazid.treatment

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

stphcy3plogcy5slide581norm

DglnR_without.vs..with.N_rep1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

Biological.replicate.3.of.6..kanamycin.treatment

X4XR.rep2

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X4dbfcy5plogcy3slide480norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.vs..DglnR.N_starvation_rep1

Biological.replicate.1.of.7..panaxydol.treatment

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.4.of.6..isoniazid.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

dosR.WT_Replicate2

Comments