Module 452 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	3.6e-30	0.00016	80	30	20160204

Motifs

Motif 1
	e-value: 3.6e-30
Motif 2
	e-value: 0.00016

Module Plots

Members

MSMEG_3722 Bifunctional coenzyme PQQ synthesis protein C/D (EC 1.3.3.11) (Coenzyme PQQ synthesis protein D)	MSMEG_1476 Putative protease IV Sppa (EC 3.1.3.2) (Signal peptide peptidase SppA, 67K type) (EC 3.4.-.-)
MSMEG_3723 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) (Coenzyme PQQ synthesis protein C) (Pyrroloquinoline quinone biosynthesis protein C)	MSMEG_2632 Methyltransferase type 11 (SAM-dependent methyltransferase)
MSMEG_3720 Recombination activating protein 1	MSMEG_2637 Oxidoreductase, Gfo/Idh/MocA family protein
MSMEG_3721 Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E)	MSMEG_2638 Uncharacterized protein
MSMEG_3724 Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone biosynthesis protein B)	MSMEG_0979 Keratin associated protein
MSMEG_3331 Uncharacterized protein	MSMEG_0976 Uncharacterized protein
MSMEG_3330 Conserved domain protein (Uncharacterized protein)	MSMEG_0977 Uncharacterized protein
MSMEG_3332 TetR-family transcriptional regulator (Transcriptional regulator, TetR family protein)	MSMEG_4289 Amidohydrolase
MSMEG_2049 Putative transcriptional regulator, TetR family protein (Transcriptional regulator, TetR family)	MSMEG_2361 Phosphoribosylglycinamide formyltransferase (Phosphoribosylglycinamide formyltransferase protein)
MSMEG_6423 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphoryl diester phosphodiesterase family protein)	MSMEG_2360 4-coumarate CoA ligase (EC 6.2.1.12) (4-coumarate:CoA ligase)
MSMEG_5308 Uncharacterized protein	MSMEG_2362 DNA ligase A (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD(+)])
MSMEG_2047 Probable enoyl-CoA hydratase (EC 4.2.1.17)	MSMEG_4491 DNA repair protein RecO (Recombination protein O)
MSMEG_4488 Hydrolase, nudix family protein (MutT/NUDIX family protein)	MSMEG_4490 Decaprenyl diphosphate synthase (DecaPP) (EC 2.5.1.86) (Decaprenyl pyrophosphate synthase) (Long-chain isoprenyl diphosphate synthase) (Trans,polycis-decaprenyl diphosphate synthase)
MSMEG_4489 Uncharacterized protein	MSMEG_2640 3-dehydroshikimate dehydratase (Xylose isomerase domain protein TIM barrel)
MSMEG_1475 Uncharacterized protein	MSMEG_5381 Uncharacterized protein

Conditions

KO_stationary.phase_rep2

KO_log.phase_rep1

WT.vs..DamtR.without.N_rep2

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

Plogcy5plogcy3slide110norm

Biological.replicate.4.of.6..isoniazid.treatment

dosR.WT_Replicate1

stphcy5plogcy3slide487norm

Wild.type.rep2.y

Wild.type.rep1.y

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

DamtR.with.vs..DamtR.without.N_.rep2

Biological.replicate.6.of.6..negative.control

DglnR_without.vs..with.N_rep2

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

Biological.replicate.6.of.7..ethambutol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Plogcy5plogcy3slide113norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.2.of.7..ethambutol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.2.of.6..isoniazid.treatment

Sub.MIC.INH

Biological.replicate.2.of.7..falcarinol.treatment

stphcy5plogcy3slide580norm

Biological.replicate.3.of.6..kanamycin.treatment

WT.with.vs..without.N_dye.swap_rep1

X3dbfcy3plogcy5slide607norm

DglnR_without.vs..with.N_rep1

Biological.replicate.3.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

WT.vs..DamtR.N.surplus_rep2

Biological.replicate.2.of.6..kanamycin.treatment

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.with.vs..without.N_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

Biological.replicate.6.of.7..panaxydol.treatment

Comments