Module 462 Residual: 0.56Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.56	0.0000000000022	210	79	34	20160204

Motifs

Motif 1
	e-value: 0.0000000000022
Motif 2
	e-value: 210

Module Plots

Members

MSMEG_6171 Uncharacterized protein	MSMEG_6899 Conserved transmembrane protein (Uncharacterized protein)
MSMEG_6932 Uncharacterized protein	MSMEG_6290 DNA-binding protein (Putative DNA-binding protein)
MSMEG_4014 Amidase, hydantoinase/carbamoylase (EC 3.5.1.87) (N-carbamoyl-L-amino acid amidohydrolase)	MSMEG_6900 Penicillin-binding protein 1A
MSMEG_4016 Uncharacterized protein	MSMEG_6169 Type II secretion system protein E (Type II/IV secretion system protein)
MSMEG_1049 Methyltransferase type 11 (Methyltransferase, UbiE/COQ5 family protein)	MSMEG_4006 Transcriptional regulator, CdaR, putative
MSMEG_0681 P450 heme-thiolate protein	MSMEG_5700 Secreted protein (Transglycosylase domain protein)
MSMEG_0682 Uncharacterized protein	MSMEG_2962 Protein-export membrane protein SecF
MSMEG_0683 Uncharacterized protein	MSMEG_4829 Cytochrome P450
MSMEG_5638 Metallo-beta-lactamase family protein (Zn-dependent hydrolase of the beta-lactamase fold-like protein)	MSMEG_3596 AAA ATPase (ATPase)
MSMEG_5639 Enoyl-CoA hydratase (Enoyl-CoA hydratase/isomerase) (EC 4.2.1.17)	MSMEG_6242 Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) (Iron-containing alcohol dehydrogenase) (EC 1.1.1.202)
MSMEG_0076 Antigen MTB48 (Uncharacterized protein)	MSMEG_6240 Uncharacterized protein
MSMEG_3595 Uncharacterized protein	MSMEG_6241 ATPase associated with various cellular activities AAA_5 (ATPase associated with various cellular activities, AAA-5)
MSMEG_3499 Putative exported protein (Uncharacterized protein)	MSMEG_2035 Amine oxidase [flavin-containing] B (EC 1.4.3.4) (Putative flavin-containing monoamine oxidase aofH)
MSMEG_2961 Protein translocase subunit SecD	MSMEG_1695 Phosphoglucomutase/phosphomannomutase (Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I) (EC 5.4.2.8)
MSMEG_3615 Zinc-binding alcohol dehydrogenase family protein (EC 1.-.-.-)	MSMEG_6222 Integral membrane protein (RDD domain containing protein)
MSMEG_2731 Uncharacterized protein MSMEG_2731/MSMEI_2664	MSMEG_1136 Uncharacterized protein
MSMEG_2964 Adenine phosphoribosyltransferase (APRT) (EC 2.4.2.7)	MSMEG_3766 Uncharacterized protein

Conditions

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.4.of.6..negative.control

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.4.of.6..isoniazid.treatment

dosR.WT_Replicate3

dosR.WT_Replicate1

KO_log.phase_rep2

Wild.type.rep2.y

WT.vs..DamtR.N.surplus_dyeswap_rep2

DglnR_without.vs..with.N_rep1

DglnR_without.vs..with.N_rep2

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

DamtR.with.vs..DamtR.without.N_.rep2

Biological.replicate.2.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

X4dbfcy5plogcy3slide480norm

X3dbfcy5plogcy3slide603norm

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X3dbfcy3plogcy5slide607norm

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_rep2

DglnR_without.vs..with.N_dyeswap_rep2

DglnR_without.vs..with.N_dyeswap_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

WT.vs..DamtR.N.surplus_rep2

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