Module 467 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	1.7e-20	0.0000000002	76	35	20160204

Motifs

Motif 1
	e-value: 1.7e-20
Motif 2
	e-value: 0.0000000002

Module Plots

Members

MSMEG_6844 Trap-t family protein transporter, dctp	MSMEG_1140 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
MSMEG_6845 TRAP dicarboxylate transporter, DctM subunit (Trap dicarboxylate transporter, dctm subunit)	MSMEG_5133 Uncharacterized protein
MSMEG_1885 2Fe-2S iron-sulfur cluster binding domain protein (Oxidoreductase FAD-binding domain protein)	MSMEG_5134 Uncharacterized protein
MSMEG_0907 Uncharacterized protein	MSMEG_1929 Conserved alanine and valine rich protein (Uncharacterized protein)
MSMEG_0906 DNA-binding protein (Transcriptional regulator, XRE family)	MSMEG_1737 Pseudouridine synthase (RNA pseudouridine synthase family protein)
MSMEG_3842 Esterase (Putative esterase)	MSMEG_6667 Uncharacterized protein
MSMEG_2084 Uncharacterized protein	MSMEG_4003 Uncharacterized protein
MSMEG_4645 Alpha oxoglutarate ferredoxin oxidoreductase, beta subunit	MSMEG_0286 GntR-family protein transcriptional regulator (Transcriptional regulator, GntR family)
MSMEG_4646 Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein (EC 1.2.7.3) (Pyruvate synthase)	MSMEG_0287 HDIG domain protein (Uncharacterized protein)
MSMEG_3034 Cytoplasmic peptidase PepQ (EC 3.4.13.9) (Metallopeptidase, M24 family protein)	MSMEG_0288 FAD dependent oxidoreductase, putative
MSMEG_6251 Uncharacterized protein	MSMEG_4700 ABC-transporter protein, ATP binding component (ATPase component of ABC transporter)
MSMEG_6668 ABC transporter, periplasmic substrate-binding protein, putative	MSMEG_0327 Aldehyde dehydrogenase (Betaine-aldehyde dehydrogenase) (EC 1.2.1.-)
MSMEG_6213 Catalase (EC 1.11.1.6) (Manganese containing catalase)	MSMEG_0670 FAD dependent oxidoreductase (FAD-dependent pyridine nucleotide-disulfide oxidoreductase)
MSMEG_1364 50S ribosomal protein L10	MSMEG_5023 Chitooligosaccharide deacetylase (Polysaccharide deacetylase) (EC 3.5.1.41)
MSMEG_1365 50S ribosomal protein L7/L12	MSMEG_1315 Transporter, small conductance mechanosensitive ion channel (MscS) family protein
MSMEG_0668 Integral membrane protein	MSMEG_4888 Periplasmic binding proteins and sugar binding domain of the LacI family protein, putative (Transcriptional regulator, LacI family)
MSMEG_4369 Uncharacterized protein	MSMEG_3916 Uncharacterized protein
MSMEG_1262 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Bedaquiline.vs..DMSO.15min

Biological.replicate.3.of.7..ethambutol.treatment

Mycobacterium.smegmatis.Spheroplast.induced

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Biological.replicate.2.of.6..kanamycin.treatment

Biological.replicate.2.of.7..panaxydol.treatment

Plogcy5plogcy3slide110norm

Wild.type.rep1.y

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

Slow.vs..Fast.Replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.4.of.6..kanamycin.treatment

mc2155.vs.Dcrp1.replicate.4

X0.6..vs..50..air.saturation.Replicate.4

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

Plogcy5plogcy3slide111norm

Biological.replicate.5.of.6..negative.control

X2.5..vs..50..air.saturation.Replicate.4

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.2

WT.vs..DamtR.N.surplus_rep2

WT_stationary.phase_rep2

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

dosR.WT_Replicate3

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DglnR.N_starvation_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

WT.vs..DglnR.N_starvation_dye.swap_rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate4

BatchCulture_LBTbroth_StationaryPhase_Replicate2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.120min

Comments