Module 479 Residual: 0.56Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.56	7.1e-19	0.000000000014	78	30	20160204

Motifs

Motif 1
	e-value: 7.1e-19
Motif 2
	e-value: 0.000000000014

Module Plots

Members

MSMEG_0947 Acyltransferase (Phospholipid/glycerol acyltransferase) (EC 2.-.-.-)	MSMEG_3754 TPR-repeat-containing protein (Tetratricopeptide TPR_4)
MSMEG_0946 NAD dependent epimerase/dehydratase family protein	MSMEG_6900 Penicillin-binding protein 1A
MSMEG_6939 Chromosome partitioning protein ParA (Soj family protein)	MSMEG_3923 Uncharacterized protein
MSMEG_0375 Phospholipase D family protein	MSMEG_1368 DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta')
MSMEG_0376 Transcriptional regulator, AraC family protein	MSMEG_0839 ATP-dependent protease La (LON) domain subfamily protein (Peptidase S16, lon-like protein) (EC 3.4.21.53)
MSMEG_3398 Integral membrane transport protein (Major facilitator superfamily MFS_1)	MSMEG_0838 AsnC-family protein transcriptional regulator (AsnC-family transcriptional regulator)
MSMEG_2397 Transcriptional regulator, AsnC family (Transcriptional regulatory protein, AsnC family protein)	MSMEG_6940 Ribosomal RNA small subunit methyltransferase G (EC 2.1.1.-) (16S rRNA 7-methylguanosine methyltransferase) (16S rRNA m7G methyltransferase)
MSMEG_1807 Acetyl-/propionyl-coenzyme A carboxylase alpha chain (EC 6.3.4.14) (Putative biotin-dependent acetyl/propionyl-CoA (Acyl-CoA) carboxylase) (EC 6.3.4.14)	MSMEG_6899 Conserved transmembrane protein (Uncharacterized protein)
MSMEG_4998 Hydrolase, alpha/beta fold family protein	MSMEG_0833 Transcriptional regulator, Fis family (Uncharacterized protein)
MSMEG_5912 Putative succinate-semialdehyde dehydrogenase [NADP(+)] (SSADH) (SSDH) (EC 1.2.1.79)	MSMEG_0832 Peptide deformylase (PDF) (EC 3.5.1.88) (Polypeptide deformylase)
MSMEG_5910 Glyoxalase/bleomycin resistance protein/dioxygenase (Quinone binding protein)	MSMEG_0830 Acetyltransferase, gnat family protein (GCN5-related N-acetyltransferase)
MSMEG_1477 Major facilitator superfamily protein	MSMEG_0878 Transcriptional regulator
MSMEG_1367 DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta)	MSMEG_2398 Thiamine-monophosphate kinase (TMP kinase) (Thiamine-phosphate kinase) (EC 2.7.4.16)
MSMEG_3865 Uncharacterized protein	MSMEG_0775 Beta-lactamase-like protein (Metallo-beta-lactamase superfamily protein)
MSMEG_3864 Cobaltochelatase, CobN subunit (EC 6.6.1.2)	MSMEG_5001 Pesticide degrading monooxygenase

Conditions

Biological.replicate.5.of.7..falcarinol.treatment

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.4.of.6..negative.control

Wild.type.rep2.x

Biological.replicate.4.of.7..ethambutol.treatment

Wild.type.rep1.x

Biological.replicate.2.of.7..falcarinol.treatment

Wild.type.rep3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

KO_log.phase_rep1

dosR.WT_Replicate4

X3dbfcy5plogcy3slide601norm

DglnR_without.vs..with.N_rep1

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

stphcy5plogcy3slide487norm

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Biological.replicate.1.of.6..kanamycin.treatment

Plogcy5plogcy3slide113norm

Wild.type.rep2.y

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

WT.vs..DamtR.N.surplus_rep2

dcpA.knockout.rep2

Biological.replicate.2.of.6..isoniazid.treatment

WT.vs..DamtR.N.surplus_rep1

Biological.replicate.5.of.6..negative.control

X2.5..vs..50..air.saturation.Replicate.4

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X4dbfcy5plogcy3slide480norm

Biological.replicate.5.of.6..isoniazid.treatment

WT_stationary.phase_rep2

WT.vs..DglnR.N_starvation_dye.swap_rep1

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

dosR.WT_Replicate2

WT.with.vs..without.N_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_rep2

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.4.of.6..isoniazid.treatment

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments