Module 508 Residual: 0.48Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.48	0.0000000000068	0.000000049	78	33	20160204

Motifs

Motif 1
	e-value: 0.0000000000068
Motif 2
	e-value: 0.000000049

Module Plots

Members

MSMEG_3359 Cis-3-chloroacrylic acid dehalogenase, putative	MSMEG_2774 Diguanylate cyclase (Ggdef) domain protein
MSMEG_2956 Fatty-acid-CoA ligase FadD9 (EC 6.2.1.3) (NAD dependent epimerase/dehydratase family protein)	MSMEG_1266 ADP-ribosylation/Crystallin J1 (Ankyrin-repeat containing protein)
MSMEG_0866 DNA or RNA helicase of superfamily protein II	MSMEG_3616 Integral membrane protein (Transglycosylase-associated protein)
MSMEG_2184 Amino acid permease (Amino acid permease-associated region)	MSMEG_0155 Transcriptional regulator
MSMEG_2183 Uncharacterized protein	MSMEG_5881 Carbon monoxide dehydrogenase subunit G (Putative carbon monoxide dehydrogenase subunit G)
MSMEG_6311 Saccharopine dehydrogenase (EC 1.5.1.7)	MSMEG_5880 Nicotine dehydrogenase (Xanthine dehydrogenase, molybdenum binding subunit apoprotein) (EC 1.17.1.4)
MSMEG_3246 Response regulator (Two-component system response regulator)	MSMEG_5883 (2Fe-2S)-binding protein (EC 1.-.-.-) ([2Fe-2S] binding domain protein)
MSMEG_3455 Heat shock protein 15	MSMEG_5882 Aerobic-type carbon monoxide dehydrogenase protein, FAD-binding subunit (Carbon monoxide dehydrogenase medium chain) (EC 1.2.99.2)
MSMEG_4954 Transcription termination factor Rho	MSMEG_4385 ABC transporter oligopeptide binding protein
MSMEG_4582 Uncharacterized protein (VWA containing CoxE-like protein)	MSMEG_4387 ABC transporter permease protein (Binding-protein-dependent transport systems inner membrane component)
MSMEG_5917 Uncharacterized protein	MSMEG_4386 ABC transporter permease protein (Oligopeptide ABC transporter, permease) (EC 3.6.3.24)
MSMEG_5879 D-alanyl-D-alanine dipeptidase (D-Ala-D-Ala dipeptidase) (EC 3.4.13.22)	MSMEG_1191 Uncharacterized protein
MSMEG_4583 ATPase associated with various cellular activities	MSMEG_1772 Uncharacterized protein
MSMEG_2798 Uncharacterized protein	MSMEG_1771 Methylase, putative
MSMEG_5934 Uncharacterized protein	MSMEG_1770 Uncharacterized protein
MSMEG_0156 Transcriptional regulator, LysR family protein	MSMEG_0167 Transmembrane transport protein
MSMEG_5936 Uncharacterized protein

Conditions

KO_stationary.phase_rep2

WT.vs..DglnR.N_starvation_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.without.N_rep2

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

Biological.replicate.3.of.7..ethambutol.treatment

dosR.WT_Replicate2

KO_log.phase_rep1

WT.vs..DamtR.N.surplus_dyeswap_rep2

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.7..ethambutol.treatment

WT.with.vs..without.N_dye.swap_rep1

rel.knockout.rep2

Wild.type.rep3

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

WT_log.phase_rep2

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Biological.replicate.6.of.7..ethambutol.treatment

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Plogcy5plogcy3slide113norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

X0.6..vs..50..air.saturation.Replicate.4

dcpA.knockout.rep2

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep2

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.2.of.6..isoniazid.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Slow.vs..Fast.Replicate.2

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

Biological.replicate.3.of.6..negative.control

X4dbfcy3plogcy5slide903norm

WT.vs..DamtR.N.surplus_rep2

Comments