Module 595 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	1.5e-20	0.000021	80	30	20160204

Motifs

Motif 1
	e-value: 1.5e-20
Motif 2
	e-value: 0.000021

Module Plots

Members

MSMEG_2971 Regulatory protein	MSMEG_1898 3-oxoacid CoA-transferase, A subunit (EC 2.8.3.5) (Succinyl-CoA:3-ketoacid-coenzyme A transferase 1)
MSMEG_2972 Permease, cytosine/purines, uracil, thiamine, allantoin family protein	MSMEG_4380 ABC transporter domain protein (EC 3.-.-.-) (ABC transporter, permease/ATP-binding protein)
MSMEG_4368 Putative regulatory protein, FmdB family protein	MSMEG_0345 Uncharacterized protein
MSMEG_1554 Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	MSMEG_0344 Uncharacterized protein
MSMEG_1553 Ethanolamine ammonia-lyase heavy chain (Ethanolamine ammonia-lyase, large subunit) (EC 4.3.1.7)	MSMEG_5276 Enoyl-CoA hydratase (Enoyl-CoA hydratase EchA9) (EC 4.2.1.17)
MSMEG_1552 Ethanolamine permease	MSMEG_5277 Enoyl-CoA hydratase/isomerase (Probable enoyl-CoA hydratase) (EC 4.2.1.17)
MSMEG_2118 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) (GlcN6P deaminase) (GNPDA) (Glucosamine-6-phosphate isomerase)	MSMEG_0343 TetR-family protein transcriptional regulator (Transcriptional regulator, TetR family)
MSMEG_2927 ABC quaternary amine transporter, permease component (ABC transporter, permease protein OpuCB)	MSMEG_5275 Conserved transmembrane protein (Permease of the major facilitator superfamily protein)
MSMEG_2926 Glycine betaine/L-proline ABC transporter (EC 3.6.3.32) (Glycine betaine/carnitine/choline transport ATP-binding protein opuCA)	MSMEG_2116 PTS system, glucose-specific IIBC component (EC 2.7.1.-) (EC 2.7.1.69)
MSMEG_2925 Binding-protein-dependent transport systems inner membrane component (Permease membrane component)	MSMEG_2117 Beta-glucoside-specific EII permease (PTS system sugar phosphotransferase component IIA) (EC 2.7.1.69)
MSMEG_2924 Permease binding-protein component (Substrate-binding region of ABC-type glycine betaine transport system)	MSMEG_4983 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein)
MSMEG_4264 Uncharacterized protein	MSMEG_4982 Uncharacterized protein
MSMEG_4265 MmpS3 protein (Putative membrane protein mmpS3)	MSMEG_4981 Aminoglycoside phosphotransferase (Phosphotransferase enzyme family protein, putative)
MSMEG_2928 Uncharacterized protein	MSMEG_2119 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (GlcNAc 6-P deacetylase)
MSMEG_3730 GAF modulated sigma54 specific transcriptional regulator, Fis family (EC 2.7.13.3) (Helix-turn-helix, Fis-type, putative)	MSMEG_3587 Amino acid permease-associated region (D-serine/D-alanine/glycine transporter)

Conditions

Biological.replicate.5.of.7..falcarinol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X4XR.rep1

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

Wild.type.rep2.x

WT.with.vs..without.N_dye.swap_rep1

dosR.WT_Replicate3

dosR.WT_Replicate2

Biological.replicate.2.of.6..negative.control

Biological.replicate.4.of.6..negative.control

Wild.type.rep2.y

WT.vs..DamtR.N.surplus_dyeswap_rep2

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..kanamycin.treatment

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

Plogcy5plogcy3slide113norm

WT.vs..DamtR.N.surplus_rep2

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.2.of.7..falcarinol.treatment

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep2

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.5

Biological.replicate.5.of.6..kanamycin.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

Biological.replicate.1.of.6..negative.control

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..panaxydol.treatment

Comments