******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/183/183.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 9090 1.0000 500 53939 1.0000 500 42625 1.0000 500 24865 1.0000 500 28202 1.0000 500 28219 1.0000 500 13622 1.0000 500 52198 1.0000 500 30003 1.0000 500 30067 1.0000 500 49897 1.0000 500 5685 1.0000 500 41778 1.0000 500 10321 1.0000 500 19004 1.0000 500 51691 1.0000 500 19300 1.0000 500 45122 1.0000 500 11735 1.0000 500 35065 1.0000 500 45527 1.0000 500 20007 1.0000 500 5311 1.0000 500 20227 1.0000 500 27508 1.0000 500 20434 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/183/183.seqs.fa -oc motifs/183 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 26 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 13000 N= 26 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.264 C 0.250 G 0.229 T 0.257 Background letter frequencies (from dataset with add-one prior applied): A 0.264 C 0.250 G 0.229 T 0.257 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 17 llr = 203 E-value = 6.8e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 61::a:7:::944122 pos.-specific C 2312:a1::3121:25 probability G 1:18:::a:7:42354 matrix T 169:::2:a:::461: bits 2.1 * 1.9 ** ** 1.7 ** ** 1.5 ** ** * Relative 1.3 **** **** Entropy 1.1 **** **** (17.3 bits) 0.9 ********* 0.6 ********** * * 0.4 ************ * * 0.2 **************** 0.0 ---------------- Multilevel ATTGACAGTGAGTTGC consensus C C T C AAGAG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 28219 243 2.14e-10 ATTCTATCTA ATTGACAGTGAGTTGC TTGTCTCTTC 35065 26 6.94e-09 ATTCATGTGA ATTGACAGTGAGAGGG AATGCTTCCG 51691 249 4.81e-08 TGAATTCTAT ATTGACAGTGAATGGA TTTCTAGAAA 42625 91 1.04e-07 TACGATGTTC ACTGACAGTCAAATGG CAATGGCAAG 10321 357 1.18e-07 AACGTCTGTT ATTCACAGTCAATTGC TAGAAGCAGC 19004 255 1.82e-07 TTCCTCAATA CTTGACAGTGAGATTC CTTCCTAAAA 45122 386 6.17e-07 CGGAGACGAG ATGGACAGTGAGAGGG ATCTTGCCGA 27508 70 7.61e-07 CAGTATGGAG ATTCACAGTCACGTGG GGACACTGGG 30003 93 1.98e-06 TGCTTTCACT ACTGACCGTGACGTGG ATTGGAAAAT 9090 170 1.98e-06 GACTAATATC ATTGACTGTGAGTAAA CGCTGCCGGT 28202 210 2.34e-06 TTGTGGGAAT GATGACAGTGAGTGAG TCACCAAAGC 20434 173 3.76e-06 CTATAGTCTT TTTGACAGTGAACGCC GAGAAAAAGC 5311 221 5.01e-06 TAACGTACAC ACTCACTGTCAGGTCC TCCGGTCACT 20227 12 1.06e-05 TGTGATCAGA CCCGACTGTGAAATAC CGGTATAACC 52198 58 1.06e-05 AGTAAGACAA CATGACAGTGCCTTTC ACTGGTAATA 24865 424 1.24e-05 CGTCTTCTTC GCTGACTGTGAATAAA CATTTAGTTT 11735 364 1.60e-05 CGGAATTCGA TTTCACAGTCCCATCC CCTTTTTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 28219 2.1e-10 242_[+1]_242 35065 6.9e-09 25_[+1]_459 51691 4.8e-08 248_[+1]_236 42625 1e-07 90_[+1]_394 10321 1.2e-07 356_[+1]_128 19004 1.8e-07 254_[+1]_230 45122 6.2e-07 385_[+1]_99 27508 7.6e-07 69_[+1]_415 30003 2e-06 92_[+1]_392 9090 2e-06 169_[+1]_315 28202 2.3e-06 209_[+1]_275 20434 3.8e-06 172_[+1]_312 5311 5e-06 220_[+1]_264 20227 1.1e-05 11_[+1]_473 52198 1.1e-05 57_[+1]_427 24865 1.2e-05 423_[+1]_61 11735 1.6e-05 363_[+1]_121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=17 28219 ( 243) ATTGACAGTGAGTTGC 1 35065 ( 26) ATTGACAGTGAGAGGG 1 51691 ( 249) ATTGACAGTGAATGGA 1 42625 ( 91) ACTGACAGTCAAATGG 1 10321 ( 357) ATTCACAGTCAATTGC 1 19004 ( 255) CTTGACAGTGAGATTC 1 45122 ( 386) ATGGACAGTGAGAGGG 1 27508 ( 70) ATTCACAGTCACGTGG 1 30003 ( 93) ACTGACCGTGACGTGG 1 9090 ( 170) ATTGACTGTGAGTAAA 1 28202 ( 210) GATGACAGTGAGTGAG 1 20434 ( 173) TTTGACAGTGAACGCC 1 5311 ( 221) ACTCACTGTCAGGTCC 1 20227 ( 12) CCCGACTGTGAAATAC 1 52198 ( 58) CATGACAGTGCCTTTC 1 24865 ( 424) GCTGACTGTGAATAAA 1 11735 ( 364) TTTCACAGTCCCATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12610 bayes= 9.6025 E= 6.8e-008 115 -50 -96 -113 -117 23 -1073 119 -1073 -209 -196 178 -1073 -9 174 -1073 192 -1073 -1073 -1073 -1073 200 -1073 -1073 142 -209 -1073 -13 -1073 -1073 213 -1073 -1073 -1073 -1073 196 -1073 23 163 -1073 174 -109 -1073 -1073 42 -9 85 -1073 42 -209 -37 68 -117 -1073 36 119 -17 -50 104 -113 -58 91 63 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 17 E= 6.8e-008 0.588235 0.176471 0.117647 0.117647 0.117647 0.294118 0.000000 0.588235 0.000000 0.058824 0.058824 0.882353 0.000000 0.235294 0.764706 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.705882 0.058824 0.000000 0.235294 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.294118 0.705882 0.000000 0.882353 0.117647 0.000000 0.000000 0.352941 0.235294 0.411765 0.000000 0.352941 0.058824 0.176471 0.411765 0.117647 0.000000 0.294118 0.588235 0.235294 0.176471 0.470588 0.117647 0.176471 0.470588 0.352941 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- A[TC]T[GC]AC[AT]GT[GC]A[GAC][TA][TG][GA][CG] -------------------------------------------------------------------------------- Time 5.86 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 22 llr = 249 E-value = 1.6e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A ::::12:31214:::::1:11 pos.-specific C 4::94:42225::a2165523 probability G 1:::45125441::72:2455 matrix T 5aa1125322:5a::733:1: bits 2.1 1.9 * * 1.7 ** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** (16.4 bits) 0.9 *** ***** 0.6 **** ******* * 0.4 **** ** ******* *** 0.2 ******* * *********** 0.0 --------------------- Multilevel TTTCGGTAGGCTTCGTCCCGG consensus C CTCTCAGA C TTG C sequence C C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 13622 285 2.76e-09 ACGGGTCCGT TTTCGTTGGACATCGTCCGGG ATCTTTCCTC 5685 258 3.16e-08 GTTCCACGAG CTTCGGCTCGAATCGTCCCGC ATGCTTCGAC 30003 245 3.16e-08 TTCTGATCGT TTTCCGCTGGGTTCCGCCCGC ATCTTTGGCC 30067 217 4.26e-08 CTTCGCGGAG CTTCCGTCCGCTTCGTCCCGT GTGGTTTTGG 35065 288 9.92e-08 AATCGTTGCG CTTCGTCTGCCATCCTCTGGG TTCACCATGG 28202 324 1.13e-07 GTACGCAATA TTTCGTGTTGCTTCGTTCGGG GCCGATCCGC 51691 346 4.34e-07 GTTCGGCGGT TTTCAGCCGGCTTCGGCTGAG AATGTCGAGC 45527 316 6.06e-07 CTTCAATTCC TTTCTGCACGCTTCGTTCGCA GTCGGCTAGC 11735 128 1.13e-06 CGAATCAAGC CTTCCACCGCCTTCGTCGCAA ATCCTATCCG 52198 221 2.02e-06 ATTCCACGGG TTTCCGTCCTGTTCGGTACCG TGCGACCATG 28219 329 4.48e-06 AGTTTAGAAG TTTCGGTAGCATTCGCCCACG CTCCGCCGTC 20227 274 4.87e-06 AGACGGTTTC GTTCGATAGTAATCCTTGCGG ATCGCCCACG 10321 264 4.87e-06 CTTCGCAGTG CTTCCCCAGCGATCGTTTCTC TCAGGTCCAG 9090 32 5.73e-06 AACGAAGCAC CTTCGGCAAAGATCATTTCGC ATCGATGGCG 53939 450 6.21e-06 TATTGCCTGT TTTTAGTTTCCATCGTCTCTG TCTTCTCCTC 5311 148 8.49e-06 GAACGGAGAA GATCCTTGCGGATCGTCGCGC TTCCGTCGCT 19300 85 8.49e-06 CAGCTCGAGC CTTTCGTCATCGTCGTCACGG CTCGAAAGAT 20007 360 9.87e-06 CTGACCTGAT CTTCGGCAAAGTTCCGCTGCA ATCGAAATCT 49897 271 1.06e-05 CAATGCCCAA TTTCGAAGGGCGTCGCTCCGC TTCGAAAAAA 20434 245 1.42e-05 TACTGTTACA GTTCCTGTGACTTCGTACGAG TCAACCCCAA 42625 287 2.00e-05 CTCTGCATGC TTTCTATGTAGTTCTTCCTGG ATCCACAGAC 24865 447 2.76e-05 AAACATTTAG TTTCTGTGTTGTCCCTCGGTG ATCTCTTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 13622 2.8e-09 284_[+2]_195 5685 3.2e-08 257_[+2]_222 30003 3.2e-08 244_[+2]_235 30067 4.3e-08 216_[+2]_263 35065 9.9e-08 287_[+2]_192 28202 1.1e-07 323_[+2]_156 51691 4.3e-07 345_[+2]_134 45527 6.1e-07 315_[+2]_164 11735 1.1e-06 127_[+2]_352 52198 2e-06 220_[+2]_259 28219 4.5e-06 328_[+2]_151 20227 4.9e-06 273_[+2]_206 10321 4.9e-06 263_[+2]_216 9090 5.7e-06 31_[+2]_448 53939 6.2e-06 449_[+2]_30 5311 8.5e-06 147_[+2]_332 19300 8.5e-06 84_[+2]_395 20007 9.9e-06 359_[+2]_120 49897 1.1e-05 270_[+2]_209 20434 1.4e-05 244_[+2]_235 42625 2e-05 286_[+2]_193 24865 2.8e-05 446_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=22 13622 ( 285) TTTCGTTGGACATCGTCCGGG 1 5685 ( 258) CTTCGGCTCGAATCGTCCCGC 1 30003 ( 245) TTTCCGCTGGGTTCCGCCCGC 1 30067 ( 217) CTTCCGTCCGCTTCGTCCCGT 1 35065 ( 288) CTTCGTCTGCCATCCTCTGGG 1 28202 ( 324) TTTCGTGTTGCTTCGTTCGGG 1 51691 ( 346) TTTCAGCCGGCTTCGGCTGAG 1 45527 ( 316) TTTCTGCACGCTTCGTTCGCA 1 11735 ( 128) CTTCCACCGCCTTCGTCGCAA 1 52198 ( 221) TTTCCGTCCTGTTCGGTACCG 1 28219 ( 329) TTTCGGTAGCATTCGCCCACG 1 20227 ( 274) GTTCGATAGTAATCCTTGCGG 1 10321 ( 264) CTTCCCCAGCGATCGTTTCTC 1 9090 ( 32) CTTCGGCAAAGATCATTTCGC 1 53939 ( 450) TTTTAGTTTCCATCGTCTCTG 1 5311 ( 148) GATCCTTGCGGATCGTCGCGC 1 19300 ( 85) CTTTCGTCATCGTCGTCACGG 1 20007 ( 360) CTTCGGCAAAGTTCCGCTGCA 1 49897 ( 271) TTTCGAAGGGCGTCGCTCCGC 1 20434 ( 245) GTTCCTGTGACTTCGTACGAG 1 42625 ( 287) TTTCTATGTAGTTCTTCCTGG 1 24865 ( 447) TTTCTGTGTTGTCCCTCGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12480 bayes= 9.501 E= 1.6e-006 -1110 54 -75 96 -254 -1110 -1110 189 -1110 -1110 -1110 196 -1110 186 -1110 -150 -154 54 84 -91 -54 -246 125 -18 -254 71 -133 82 5 -14 -1 9 -95 -14 99 -50 -22 -14 67 -50 -95 100 67 -1110 46 -1110 -133 108 -1110 -246 -1110 189 -1110 200 -1110 -1110 -254 -14 158 -250 -1110 -146 -33 150 -254 135 -1110 31 -154 86 -33 9 -254 112 67 -250 -95 -46 125 -91 -95 13 125 -250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 22 E= 1.6e-006 0.000000 0.363636 0.136364 0.500000 0.045455 0.000000 0.000000 0.954545 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.000000 0.090909 0.090909 0.363636 0.409091 0.136364 0.181818 0.045455 0.545455 0.227273 0.045455 0.409091 0.090909 0.454545 0.272727 0.227273 0.227273 0.272727 0.136364 0.227273 0.454545 0.181818 0.227273 0.227273 0.363636 0.181818 0.136364 0.500000 0.363636 0.000000 0.363636 0.000000 0.090909 0.545455 0.000000 0.045455 0.000000 0.954545 0.000000 1.000000 0.000000 0.000000 0.045455 0.227273 0.681818 0.045455 0.000000 0.090909 0.181818 0.727273 0.045455 0.636364 0.000000 0.318182 0.090909 0.454545 0.181818 0.272727 0.045455 0.545455 0.363636 0.045455 0.136364 0.181818 0.545455 0.136364 0.136364 0.272727 0.545455 0.045455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [TC]TTC[GC][GT][TC][ATCG][GC][GAC][CG][TA]TC[GC]T[CT][CT][CG]G[GC] -------------------------------------------------------------------------------- Time 12.01 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 12 sites = 17 llr = 181 E-value = 1.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 1:8::a::1167 pos.-specific C 54:a9::::41: probability G 162::::a9232 matrix T 3:::1:a::3:1 bits 2.1 * 1.9 * *** 1.7 * *** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******** (15.3 bits) 0.9 ******** * 0.6 ******** ** 0.4 ******** ** 0.2 ************ 0.0 ------------ Multilevel CGACCATGGCAA consensus TC TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------ 28219 382 8.53e-07 CAATCTGGCA CGACCATGGGGA CGAATGTAAC 11735 220 1.02e-06 CGAAACTCTT GGACCATGGCAA CCGCTGCCGT 19300 308 1.02e-06 GGAGGTTCGG CGACCATGGAAA TACTCAATCG 28202 399 1.30e-06 CAGAACGATG CGACCATGGTAG AACGCACACA 35065 310 1.79e-06 TCCTCTGGGT TCACCATGGCGA TGCCGCCGGG 20227 324 2.27e-06 ACCCTGTCTT CCACCATGGCAG GACAAGGAAT 27508 322 2.99e-06 AAGGGGAATG GGACCATGGGAA ACCAACACTA 20007 46 2.99e-06 ATGCCAGATC CGACTATGGCAA TGTAGTATAG 45527 15 5.54e-06 GCCTTGGTCG ACACCATGGTAA GAGAGCAAAG 5311 191 6.65e-06 GGTACACCGC TCACCATGGCCA ACGCTTACTA 49897 77 7.86e-06 GGTGGAAGGA TCGCCATGGTAA ACCGTCGGTG 30067 317 7.86e-06 GACTCGACCT CCACCATGGGCA TACTCCTCTG 52198 244 1.40e-05 CGGTACCGTG CGACCATGAAAA TCTCGTCGCG 51691 380 1.61e-05 GTCGAGCTGT AGACCATGACAA TCGAACGGAA 10321 311 1.85e-05 CCACGAAGAC TGGCCATGGTGG AAGCCGAATA 5685 331 1.85e-05 CCCCCGACTA CGGCCATGGTGT CCGACCATTC 24865 378 3.28e-05 GGACTGGACC TGACTATGGCGT GGACTGTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 28219 8.5e-07 381_[+3]_107 11735 1e-06 219_[+3]_269 19300 1e-06 307_[+3]_181 28202 1.3e-06 398_[+3]_90 35065 1.8e-06 309_[+3]_179 20227 2.3e-06 323_[+3]_165 27508 3e-06 321_[+3]_167 20007 3e-06 45_[+3]_443 45527 5.5e-06 14_[+3]_474 5311 6.6e-06 190_[+3]_298 49897 7.9e-06 76_[+3]_412 30067 7.9e-06 316_[+3]_172 52198 1.4e-05 243_[+3]_245 51691 1.6e-05 379_[+3]_109 10321 1.8e-05 310_[+3]_178 5685 1.8e-05 330_[+3]_158 24865 3.3e-05 377_[+3]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=12 seqs=17 28219 ( 382) CGACCATGGGGA 1 11735 ( 220) GGACCATGGCAA 1 19300 ( 308) CGACCATGGAAA 1 28202 ( 399) CGACCATGGTAG 1 35065 ( 310) TCACCATGGCGA 1 20227 ( 324) CCACCATGGCAG 1 27508 ( 322) GGACCATGGGAA 1 20007 ( 46) CGACTATGGCAA 1 45527 ( 15) ACACCATGGTAA 1 5311 ( 191) TCACCATGGCCA 1 49897 ( 77) TCGCCATGGTAA 1 30067 ( 317) CCACCATGGGCA 1 52198 ( 244) CGACCATGAAAA 1 51691 ( 380) AGACCATGACAA 1 10321 ( 311) TGGCCATGGTGG 1 5685 ( 331) CGGCCATGGTGT 1 24865 ( 378) TGACTATGGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 12714 bayes= 10.3402 E= 1.3e-005 -117 91 -96 19 -1073 50 150 -1073 164 -1073 -37 -1073 -1073 200 -1073 -1073 -1073 182 -1073 -113 192 -1073 -1073 -1073 -1073 -1073 -1073 196 -1073 -1073 213 -1073 -117 -1073 195 -1073 -117 72 -37 19 115 -109 36 -1073 142 -1073 -37 -113 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 17 E= 1.3e-005 0.117647 0.470588 0.117647 0.294118 0.000000 0.352941 0.647059 0.000000 0.823529 0.000000 0.176471 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.882353 0.000000 0.117647 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.117647 0.000000 0.882353 0.000000 0.117647 0.411765 0.176471 0.294118 0.588235 0.117647 0.294118 0.000000 0.705882 0.000000 0.176471 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CT][GC]ACCATGG[CT][AG]A -------------------------------------------------------------------------------- Time 17.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 9090 1.62e-04 31_[+2(5.73e-06)]_117_\ [+1(1.98e-06)]_315 53939 1.57e-02 449_[+2(6.21e-06)]_30 42625 6.39e-06 90_[+1(1.04e-07)]_180_\ [+2(2.00e-05)]_193 24865 1.35e-04 377_[+3(3.28e-05)]_34_\ [+1(1.24e-05)]_7_[+2(2.76e-05)]_33 28202 1.23e-08 209_[+1(2.34e-06)]_98_\ [+2(1.13e-07)]_3_[+2(8.55e-05)]_30_[+3(1.30e-06)]_90 28219 4.48e-11 242_[+1(2.14e-10)]_70_\ [+2(4.48e-06)]_32_[+3(8.53e-07)]_107 13622 8.25e-05 284_[+2(2.76e-09)]_195 52198 5.63e-06 57_[+1(1.06e-05)]_147_\ [+2(2.02e-06)]_2_[+3(1.40e-05)]_245 30003 9.70e-07 92_[+1(1.98e-06)]_136_\ [+2(3.16e-08)]_235 30067 3.67e-06 216_[+2(4.26e-08)]_79_\ [+3(7.86e-06)]_172 49897 8.27e-04 76_[+3(7.86e-06)]_182_\ [+2(1.06e-05)]_209 5685 1.71e-05 257_[+2(3.16e-08)]_52_\ [+3(1.85e-05)]_158 41778 8.64e-01 500 10321 2.80e-07 263_[+2(4.87e-06)]_26_\ [+3(1.85e-05)]_34_[+1(1.18e-07)]_128 19004 2.46e-03 21_[+1(6.82e-05)]_217_\ [+1(1.82e-07)]_230 51691 1.19e-08 248_[+1(4.81e-08)]_81_\ [+2(4.34e-07)]_13_[+3(1.61e-05)]_109 19300 1.28e-04 84_[+2(8.49e-06)]_202_\ [+3(1.02e-06)]_181 45122 1.26e-03 385_[+1(6.17e-07)]_99 11735 4.61e-07 127_[+2(1.13e-06)]_71_\ [+3(1.02e-06)]_132_[+1(1.60e-05)]_121 35065 6.58e-11 25_[+1(6.94e-09)]_246_\ [+2(9.92e-08)]_1_[+3(1.79e-06)]_143_[+2(1.84e-06)]_15 45527 7.28e-05 14_[+3(5.54e-06)]_289_\ [+2(6.06e-07)]_164 20007 4.33e-04 45_[+3(2.99e-06)]_302_\ [+2(9.87e-06)]_120 5311 5.35e-06 147_[+2(8.49e-06)]_22_\ [+3(6.65e-06)]_18_[+1(5.01e-06)]_264 20227 2.43e-06 11_[+1(1.06e-05)]_246_\ [+2(4.87e-06)]_29_[+3(2.27e-06)]_165 27508 5.27e-05 69_[+1(7.61e-07)]_236_\ [+3(2.99e-06)]_167 20434 5.59e-04 172_[+1(3.76e-06)]_56_\ [+2(1.42e-05)]_235 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************