******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/17/17.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10093 1.0000 500 10414 1.0000 500 1071 1.0000 500 10809 1.0000 500 10904 1.0000 500 11086 1.0000 500 11760 1.0000 500 16656 1.0000 500 21114 1.0000 500 22608 1.0000 500 22650 1.0000 500 23607 1.0000 500 260757 1.0000 500 260942 1.0000 500 261147 1.0000 500 261407 1.0000 500 262069 1.0000 500 262674 1.0000 500 263937 1.0000 500 264237 1.0000 500 264921 1.0000 500 269348 1.0000 500 270357 1.0000 500 2769 1.0000 500 3113 1.0000 500 3186 1.0000 500 3299 1.0000 500 33937 1.0000 500 34447 1.0000 500 3622 1.0000 500 37183 1.0000 500 38022 1.0000 500 38807 1.0000 500 38879 1.0000 500 3932 1.0000 500 42326 1.0000 500 4379 1.0000 500 4440 1.0000 500 4710 1.0000 500 5367 1.0000 500 5785 1.0000 500 5815 1.0000 500 6797 1.0000 500 7541 1.0000 500 7643 1.0000 500 7956 1.0000 500 8426 1.0000 500 8670 1.0000 500 874 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/17/17.seqs.fa -oc motifs/17 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 49 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 24500 N= 49 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.266 C 0.227 G 0.246 T 0.261 Background letter frequencies (from dataset with add-one prior applied): A 0.266 C 0.227 G 0.246 T 0.261 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 16 sites = 43 llr = 423 E-value = 4.6e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 628144199:721532 pos.-specific C 36253291:a:69165 probability G 12::12::::3::1:3 matrix T :::321:::::1:311 bits 2.1 1.9 * 1.7 * 1.5 * ** * Relative 1.3 **** * Entropy 1.1 * ***** * (14.2 bits) 0.9 * ******* * 0.6 **** ******* * 0.4 **** ********** 0.2 ***** ********** 0.0 ---------------- Multilevel ACACAACAACACCACC consensus C TCG GA TAG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 23607 179 2.33e-08 CTGTTCTCCC CCCCAACAACACCACC GCGACGACGA 8670 411 1.14e-07 CATCAACACC ACCTACCAACACCACC TACCAACACC 263937 466 1.39e-07 CAACTAGATA CAACAACAACGCCACC AGATCACTCC 260942 186 4.11e-07 ATACCGCAGA ACACTCCAACACCGCC AGTCCTTGAC 10809 10 4.11e-07 AACGCAGTA GCACGACAACACCTCC TTCTGAAACG 7643 420 6.96e-07 TTCCATCTAC ACACAACCACAACAAC GTGTTGGTCT 3622 483 6.96e-07 ACGATAACTC ACAAAGCAACACCTCA CA 38807 137 8.07e-07 TCGCAGCGCA GCAAAGCAACACCTCC GCGAGGAAGT 38022 298 1.95e-06 TCTCCGGTTG AGCCAACAACACCTAG CTGAAGTTGT 10093 449 2.21e-06 CCGCCAGCTC ACATGGCAACACCAAA GTTCTCAACG 10414 93 2.48e-06 TACACGGAAC AAACATCAACAACTCG GCATCGTCAA 38879 409 2.76e-06 ACGGTGCACC ACCCAACAACGCCGAC AGTCGAACGC 3113 213 3.08e-06 TCATCGCCCT CCACCTCAACAACAAA CTGAGGTGTC 3932 477 3.44e-06 ACCAACCCTT ACACCACAACAAAACA ACAGCATC 22650 462 4.81e-06 CTACTGCCAA ACACCGCAACGTCACT CCCACTCCTC 2769 380 5.33e-06 CTACGTTGCA ACAACTAAACACCACC CTCAAATCGT 11086 439 5.33e-06 GAAGCTCATA AAACAGCAACGCCTTC ACTGCAAACT 34447 475 5.90e-06 ACTTCACCAA CCATTACAACAAAACC GCCAGAAACC 264921 41 5.90e-06 AGTGTGGCCA ACATTGCAACACGTCC ATGCATGACT 260757 482 5.90e-06 GCAATCTCTC GCACCACAACGTCAAG ACG 874 467 8.01e-06 GTGACATCTG CCACTGCTACACCTCC CAAAGAACAA 5815 470 8.86e-06 CTCAACCACC GCACGGCAACGTCACC ACCATCAGCA 1071 474 8.86e-06 GACGACGCAG ACAACACAACATCCAC AACAAAACAC 7541 465 1.07e-05 GCGAGAGGAG ACAACATAACACCAAC GAAGCAAGCA 6797 309 1.07e-05 ATGTTGTTGT AGATAGCACCACCAAC CAACAGTCTT 3186 64 1.07e-05 GAGTAGCTGA AAACCCAAACGCCTCC AAATTGATCT 16656 268 1.18e-05 TCATCTCATG GGATCACAACAACAAG CTCCTCGCAT 262674 485 1.87e-05 CACACAAAGC ACGTACCAACACCGCC 42326 458 2.04e-05 AAGCTGAAAT ACACAACCACACACAC ACACACACAC 4710 453 2.23e-05 GAAAGAGGAT ACACAACCACAACCAA CAACGCTTAC 3299 48 2.43e-05 CCACCAGTAC CGACGCCAACATCAAG CACCACAGCT 11760 475 2.65e-05 CTCTTCCTCT CACTCCCAACAACAAG CAGCCAAACC 262069 469 3.14e-05 CGAGGAACAC CGATCACAACCCCACA CGTAACGCCA 261147 258 3.41e-05 TGGCCACTGC CTACAACAACACATAG CACTAAAGAG 264237 436 4.01e-05 CTCCCTCCTA CGCTCTCAACAACACA CTCTTCACAA 270357 41 4.35e-05 GTAGGCTTAG AAATTCCAACGCCTTG GTTCTCTTGG 269348 386 4.35e-05 CTAACATGTA CACTAACCACACCACT CACAACAAAA 261407 42 4.35e-05 GTAGGCTTAG AAATTCCAACGCCTTG GTTCTCTTGG 4379 398 5.09e-05 AACACCACGA CGAATGCAACAACACT ACTACCAGTT 33937 481 5.50e-05 GTTAGTTGTA GTACACCACCACCTCC CACA 21114 457 9.27e-05 AGCAAGCACA ACATATCATCGTCACG TCGATCATCT 10904 289 9.27e-05 GCGACCGACG CCCCTAACACGCCACG CAAGGGACGA 8426 454 9.95e-05 ATTTTACAAT ACACCTCAAAACGTCC TACACCATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 23607 2.3e-08 178_[+1]_306 8670 1.1e-07 410_[+1]_74 263937 1.4e-07 465_[+1]_19 260942 4.1e-07 185_[+1]_299 10809 4.1e-07 9_[+1]_475 7643 7e-07 419_[+1]_65 3622 7e-07 482_[+1]_2 38807 8.1e-07 136_[+1]_348 38022 2e-06 297_[+1]_187 10093 2.2e-06 448_[+1]_36 10414 2.5e-06 92_[+1]_392 38879 2.8e-06 408_[+1]_76 3113 3.1e-06 212_[+1]_272 3932 3.4e-06 476_[+1]_8 22650 4.8e-06 461_[+1]_23 2769 5.3e-06 379_[+1]_105 11086 5.3e-06 438_[+1]_46 34447 5.9e-06 474_[+1]_10 264921 5.9e-06 40_[+1]_444 260757 5.9e-06 481_[+1]_3 874 8e-06 466_[+1]_18 5815 8.9e-06 469_[+1]_15 1071 8.9e-06 473_[+1]_11 7541 1.1e-05 464_[+1]_20 6797 1.1e-05 308_[+1]_176 3186 1.1e-05 63_[+1]_421 16656 1.2e-05 267_[+1]_217 262674 1.9e-05 484_[+1] 42326 2e-05 457_[+1]_27 4710 2.2e-05 452_[+1]_32 3299 2.4e-05 47_[+1]_437 11760 2.6e-05 474_[+1]_10 262069 3.1e-05 468_[+1]_16 261147 3.4e-05 257_[+1]_227 264237 4e-05 435_[+1]_49 270357 4.3e-05 40_[+1]_444 269348 4.3e-05 385_[+1]_99 261407 4.3e-05 41_[+1]_443 4379 5.1e-05 397_[+1]_87 33937 5.5e-05 480_[+1]_4 21114 9.3e-05 456_[+1]_28 10904 9.3e-05 288_[+1]_196 8426 0.0001 453_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=16 seqs=43 23607 ( 179) CCCCAACAACACCACC 1 8670 ( 411) ACCTACCAACACCACC 1 263937 ( 466) CAACAACAACGCCACC 1 260942 ( 186) ACACTCCAACACCGCC 1 10809 ( 10) GCACGACAACACCTCC 1 7643 ( 420) ACACAACCACAACAAC 1 3622 ( 483) ACAAAGCAACACCTCA 1 38807 ( 137) GCAAAGCAACACCTCC 1 38022 ( 298) AGCCAACAACACCTAG 1 10093 ( 449) ACATGGCAACACCAAA 1 10414 ( 93) AAACATCAACAACTCG 1 38879 ( 409) ACCCAACAACGCCGAC 1 3113 ( 213) CCACCTCAACAACAAA 1 3932 ( 477) ACACCACAACAAAACA 1 22650 ( 462) ACACCGCAACGTCACT 1 2769 ( 380) ACAACTAAACACCACC 1 11086 ( 439) AAACAGCAACGCCTTC 1 34447 ( 475) CCATTACAACAAAACC 1 264921 ( 41) ACATTGCAACACGTCC 1 260757 ( 482) GCACCACAACGTCAAG 1 874 ( 467) CCACTGCTACACCTCC 1 5815 ( 470) GCACGGCAACGTCACC 1 1071 ( 474) ACAACACAACATCCAC 1 7541 ( 465) ACAACATAACACCAAC 1 6797 ( 309) AGATAGCACCACCAAC 1 3186 ( 64) AAACCCAAACGCCTCC 1 16656 ( 268) GGATCACAACAACAAG 1 262674 ( 485) ACGTACCAACACCGCC 1 42326 ( 458) ACACAACCACACACAC 1 4710 ( 453) ACACAACCACAACCAA 1 3299 ( 48) CGACGCCAACATCAAG 1 11760 ( 475) CACTCCCAACAACAAG 1 262069 ( 469) CGATCACAACCCCACA 1 261147 ( 258) CTACAACAACACATAG 1 264237 ( 436) CGCTCTCAACAACACA 1 270357 ( 41) AAATTCCAACGCCTTG 1 269348 ( 386) CACTAACCACACCACT 1 261407 ( 42) AAATTCCAACGCCTTG 1 4379 ( 398) CGAATGCAACAACACT 1 33937 ( 481) GTACACCACCACCTCC 1 21114 ( 457) ACATATCATCGTCACG 1 10904 ( 289) CCCCTAACACGCCACG 1 8426 ( 454) ACACCTCAAAACGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 23765 bayes= 9.43855 E= 4.6e-024 107 41 -82 -1207 -51 141 -60 -249 157 -29 -340 -1207 -93 124 -1207 32 66 41 -140 -49 66 -12 -8 -90 -193 200 -1207 -348 169 -97 -1207 -348 181 -229 -1207 -348 -351 210 -1207 -1207 144 -329 6 -1207 -19 147 -1207 -90 -151 192 -240 -1207 101 -170 -182 32 39 136 -1207 -190 -71 117 6 -190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 43 E= 4.6e-024 0.558140 0.302326 0.139535 0.000000 0.186047 0.604651 0.162791 0.046512 0.790698 0.186047 0.023256 0.000000 0.139535 0.534884 0.000000 0.325581 0.418605 0.302326 0.093023 0.186047 0.418605 0.209302 0.232558 0.139535 0.069767 0.906977 0.000000 0.023256 0.860465 0.116279 0.000000 0.023256 0.930233 0.046512 0.000000 0.023256 0.023256 0.976744 0.000000 0.000000 0.720930 0.023256 0.255814 0.000000 0.232558 0.627907 0.000000 0.139535 0.093023 0.860465 0.046512 0.000000 0.534884 0.069767 0.069767 0.325581 0.348837 0.581395 0.000000 0.069767 0.162791 0.511628 0.255814 0.069767 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [AC]CA[CT][AC][AGC]CAAC[AG][CA]C[AT][CA][CG] -------------------------------------------------------------------------------- Time 23.86 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 41 llr = 415 E-value = 4.6e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 1::32211::1:1::3::51: pos.-specific C :::::121:22::11:3:1:: probability G 249:45425245357:464:8 matrix T 66:743365545642744:91 bits 2.1 1.9 1.7 1.5 * Relative 1.3 * ** Entropy 1.1 ** * * ** (14.6 bits) 0.9 *** ** * ** 0.6 *** * ***** **** 0.4 ***** *** ********** 0.2 ********************* 0.0 --------------------- Multilevel TTGTGGGTGTGTTGGTGGATG consensus G ATTT TGTGGT ATTG sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 3622 267 2.28e-09 TGCACGTCGT TTGTTGGTTTGTTGTTGGATG GTTGCGTTTG 21114 397 2.04e-08 CTCTCCTAGG TGGTGTGTTTCTGTGTGGGTG TGTTGCAATA 10904 2 1.85e-07 G TTGAGTCTGCTGTGGATGATG CCGTGGATAG 33937 96 2.87e-07 GGAGTTTCTT TTGTAGCAGTGTTGGAGGATG ATTTGGGATT 22608 25 2.87e-07 GAGCATGATG TTGTTGATGTGTATGTTTATG TGTACGTGAT 5367 206 3.31e-07 GGTGGGTGAT GGGTGGCTGTGGTTCTCGATG TTGTGTCTTG 261147 30 1.21e-06 CATGGTGGAA TGGTGTGGTGGGTTGTGTATT GGCAGCGAAA 260757 241 1.36e-06 TTGAGCTGTT AGGAGTGGGTTGTTGTCGGTG CTGTTGCTAG 42326 149 1.54e-06 CGTTTGTTGA TTGATGCTTGCTTGGTGTATT TATCGTATCA 5815 221 1.72e-06 TTTCGGTGAG GTGTGGTCGCTTGGGAGGATG GCGAGGAGGG 269348 74 1.93e-06 AGCTGATGAT TGGTGATGGCTGTCGAGGATG ATGTGTTAGT 10093 116 1.93e-06 CTCTGTTGTG TTGTTAGTTTTGTGGTGTGTC AAAGGAGGAA 1071 264 2.42e-06 GGGTCGAGGT TGGTGGGTCTTTGCGAGTGTG AAGTTACAGT 874 21 3.01e-06 TGAGTGAGGG ATGTGCGTGAGGTGGTGGGTG TGAAGGCCGT 4440 189 3.35e-06 AGGATGCTAC TGGTGATCTTCATGGTGGATG GACGGAAAGA 264237 211 4.14e-06 GGCGGGCCTC TGATGGTTGGCTTTGTTTGTG TCAACGGCTC 7643 109 4.59e-06 TCTCTTCGGC TTGTGTAGGCAGGTGTTGGTG TGTTTTCTCT 38022 410 4.59e-06 TCTCGTTTTT TGTTGTTTTTCTTGGACGGTG TACCCTGTCC 10414 341 4.59e-06 AATGGAAACG ATGATAGGGTTGTGTTTGATG GAGTACCGAG 34447 214 6.84e-06 ACAACTCTTG CTGATCCTTCTGTGGTGGATG CTCTTATTGC 38807 205 7.54e-06 AGCGTCGTAG TGGTGATCTCTTGCGACGATG ATGGCATGTG 264921 232 7.54e-06 TGAGACGGGT GTGATGATGTCTTGCTCGGTG GATTCTTCGG 7956 20 8.30e-06 TTTAGAAGAG TGGATCCTTCGTTTTTTTGTG GTGGCGGCGA 262069 86 8.30e-06 AACAGGAGAC TGGTGGCTCTTGGGGATTGTT TAACTCCATT 4379 53 1.10e-05 GACTTGTACA TGGTGGTTGTGTAGTACGAAG AAGGAGACGA 270357 63 1.20e-05 CTTGGTTCTC TTGGATGTTTGTGTCTGTATG CCAGACGAAG 261407 64 1.20e-05 CTTGGTTCTC TTGGATGTTTGTGTCTGTATG CCAGACGAAG 2769 251 1.32e-05 AGAAGGAGCC ATGTTGGTTTTTGGTTTGAGG AGACGACGCA 263937 118 1.32e-05 ATTCAGACCA TTGTGTTTAGAGTGGACGATG CTCCGAAAAT 5785 186 1.87e-05 CTGGTTGGTT TTGTATTCGTGTTTGTTGCAG AGGTGAACAG 11760 189 2.03e-05 TTGTCTTATG TTGTCATTGTGTTCGTTTGTT TGTGCCTTGT 3932 284 2.21e-05 CCTCTTTTTT ATGTAGCAGCATTGGTTTGTG TACTAATTCC 3186 264 2.21e-05 AGTTGCCATT TGGTTGCTTGGGATGTTTCTT CGTAGTGCAT 37183 360 2.82e-05 CCGTTGCGTC GTGTTGGAGTTGGTGTTGAAT GGATGCAGAG 4710 25 3.31e-05 GAGGACATGG TGATGGTGTTGTGTTAGTGTG ATGTGTTAAT 10809 36 3.31e-05 TTCTGAAACG CTGTTTGGTTTGGCTTCTGTG TTGGCAGAGG 22650 60 3.58e-05 GTACAACTTC GTGAAGGATGTGTGGTCGAAG CCGATGATGA 38879 272 4.18e-05 TGTGCGGAGT GTGAAACGTGCGGTGTCTATG CGGTGTTCGA 3299 366 8.01e-05 AATGACGGCA AGGATAACGGAGTGGTCGGTG TGAATCTTTT 260942 311 1.12e-04 GAGGGCCACT GTGATGGTTGTATCTTTGCTG TCAACAAGTG 11086 36 1.63e-04 GCAACTCCAA TGTTTGATGAGGATGATTATG ACGTGGAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 3622 2.3e-09 266_[+2]_213 21114 2e-08 396_[+2]_83 10904 1.9e-07 1_[+2]_478 33937 2.9e-07 95_[+2]_384 22608 2.9e-07 24_[+2]_455 5367 3.3e-07 205_[+2]_274 261147 1.2e-06 29_[+2]_450 260757 1.4e-06 240_[+2]_239 42326 1.5e-06 148_[+2]_331 5815 1.7e-06 220_[+2]_259 269348 1.9e-06 73_[+2]_406 10093 1.9e-06 115_[+2]_364 1071 2.4e-06 263_[+2]_216 874 3e-06 20_[+2]_459 4440 3.4e-06 188_[+2]_291 264237 4.1e-06 210_[+2]_269 7643 4.6e-06 108_[+2]_371 38022 4.6e-06 409_[+2]_70 10414 4.6e-06 340_[+2]_139 34447 6.8e-06 213_[+2]_266 38807 7.5e-06 204_[+2]_275 264921 7.5e-06 231_[+2]_248 7956 8.3e-06 19_[+2]_460 262069 8.3e-06 85_[+2]_394 4379 1.1e-05 52_[+2]_427 270357 1.2e-05 62_[+2]_417 261407 1.2e-05 63_[+2]_416 2769 1.3e-05 250_[+2]_229 263937 1.3e-05 117_[+2]_362 5785 1.9e-05 185_[+2]_294 11760 2e-05 188_[+2]_291 3932 2.2e-05 283_[+2]_196 3186 2.2e-05 263_[+2]_216 37183 2.8e-05 359_[+2]_120 4710 3.3e-05 24_[+2]_455 10809 3.3e-05 35_[+2]_444 22650 3.6e-05 59_[+2]_420 38879 4.2e-05 271_[+2]_208 3299 8e-05 365_[+2]_114 260942 0.00011 310_[+2]_169 11086 0.00016 35_[+2]_444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=41 3622 ( 267) TTGTTGGTTTGTTGTTGGATG 1 21114 ( 397) TGGTGTGTTTCTGTGTGGGTG 1 10904 ( 2) TTGAGTCTGCTGTGGATGATG 1 33937 ( 96) TTGTAGCAGTGTTGGAGGATG 1 22608 ( 25) TTGTTGATGTGTATGTTTATG 1 5367 ( 206) GGGTGGCTGTGGTTCTCGATG 1 261147 ( 30) TGGTGTGGTGGGTTGTGTATT 1 260757 ( 241) AGGAGTGGGTTGTTGTCGGTG 1 42326 ( 149) TTGATGCTTGCTTGGTGTATT 1 5815 ( 221) GTGTGGTCGCTTGGGAGGATG 1 269348 ( 74) TGGTGATGGCTGTCGAGGATG 1 10093 ( 116) TTGTTAGTTTTGTGGTGTGTC 1 1071 ( 264) TGGTGGGTCTTTGCGAGTGTG 1 874 ( 21) ATGTGCGTGAGGTGGTGGGTG 1 4440 ( 189) TGGTGATCTTCATGGTGGATG 1 264237 ( 211) TGATGGTTGGCTTTGTTTGTG 1 7643 ( 109) TTGTGTAGGCAGGTGTTGGTG 1 38022 ( 410) TGTTGTTTTTCTTGGACGGTG 1 10414 ( 341) ATGATAGGGTTGTGTTTGATG 1 34447 ( 214) CTGATCCTTCTGTGGTGGATG 1 38807 ( 205) TGGTGATCTCTTGCGACGATG 1 264921 ( 232) GTGATGATGTCTTGCTCGGTG 1 7956 ( 20) TGGATCCTTCGTTTTTTTGTG 1 262069 ( 86) TGGTGGCTCTTGGGGATTGTT 1 4379 ( 53) TGGTGGTTGTGTAGTACGAAG 1 270357 ( 63) TTGGATGTTTGTGTCTGTATG 1 261407 ( 64) TTGGATGTTTGTGTCTGTATG 1 2769 ( 251) ATGTTGGTTTTTGGTTTGAGG 1 263937 ( 118) TTGTGTTTAGAGTGGACGATG 1 5785 ( 186) TTGTATTCGTGTTTGTTGCAG 1 11760 ( 189) TTGTCATTGTGTTCGTTTGTT 1 3932 ( 284) ATGTAGCAGCATTGGTTTGTG 1 3186 ( 264) TGGTTGCTTGGGATGTTTCTT 1 37183 ( 360) GTGTTGGAGTTGGTGTTGAAT 1 4710 ( 25) TGATGGTGTTGTGTTAGTGTG 1 10809 ( 36) CTGTTTGGTTTGGCTTCTGTG 1 22650 ( 60) GTGAAGGATGTGTGGTCGAAG 1 38879 ( 272) GTGAAACGTGCGGTGTCTATG 1 3299 ( 366) AGGATAACGGAGTGGTCGGTG 1 260942 ( 311) GTGATGGTTGTATCTTTGCTG 1 11086 ( 36) TGTTTGATGAGGATGATTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 23520 bayes= 9.44057 E= 4.6e-013 -86 -222 -53 128 -1200 -1200 75 117 -244 -1200 187 -242 1 -1200 -233 139 -64 -322 83 49 -45 -163 91 4 -112 10 57 4 -145 -90 -33 117 -344 -222 91 83 -244 -22 -17 104 -145 -41 57 49 -244 -1200 91 90 -145 -1200 37 117 -1200 -63 91 58 -1200 -122 152 -42 14 -1200 -1200 144 -1200 24 57 49 -1200 -1200 125 67 101 -163 66 -1200 -145 -1200 -333 175 -1200 -322 175 -83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 41 E= 4.6e-013 0.146341 0.048780 0.170732 0.634146 0.000000 0.000000 0.414634 0.585366 0.048780 0.000000 0.902439 0.048780 0.268293 0.000000 0.048780 0.682927 0.170732 0.024390 0.439024 0.365854 0.195122 0.073171 0.463415 0.268293 0.121951 0.243902 0.365854 0.268293 0.097561 0.121951 0.195122 0.585366 0.024390 0.048780 0.463415 0.463415 0.048780 0.195122 0.219512 0.536585 0.097561 0.170732 0.365854 0.365854 0.048780 0.000000 0.463415 0.487805 0.097561 0.000000 0.317073 0.585366 0.000000 0.146341 0.463415 0.390244 0.000000 0.097561 0.707317 0.195122 0.292683 0.000000 0.000000 0.707317 0.000000 0.268293 0.365854 0.365854 0.000000 0.000000 0.585366 0.414634 0.536585 0.073171 0.390244 0.000000 0.097561 0.000000 0.024390 0.878049 0.000000 0.024390 0.829268 0.146341 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- T[TG]G[TA][GT][GT][GTC]T[GT][TG][GT][TG][TG][GT]G[TA][GTC][GT][AG]TG -------------------------------------------------------------------------------- Time 48.05 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 49 llr = 424 E-value = 9.8e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 3:4124:14:13:::3 pos.-specific C 44252381:6::9225 probability G 26:16:17::91:831 matrix T 1:33:32154:61:41 bits 2.1 1.9 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 * * ** ** (12.5 bits) 0.9 * * *** ** 0.6 * * ******** 0.4 ** ********** 0.2 **************** 0.0 ---------------- Multilevel CGACGACGTCGTCGTC consensus ACTTAT AT A CGA sequence C C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 270357 351 5.94e-09 TAGATAAAAG CCTCGTCGTCGTCGTC AGTCTCGAAT 261407 352 5.94e-09 TAGATAAAAG CCTCGTCGTCGTCGTC AGTCTCGAAT 8426 428 4.31e-08 ATCCTTCCCA CGTCGTCGTTGTCGTC ATTTTACAAT 5367 426 1.21e-07 AATTATGCAG ACATGACGTCGTCGCC TACGACGTGG 260942 99 3.66e-07 GATGTGGCCG AGCCGTCGACGTCGTA ACCCTTTGAT 4379 341 5.46e-07 TCAAAGAGGA CCACGACGACGTCCGA CGACGAAGAA 3113 245 1.13e-06 TGTCCTCCAT GGCCGTCGTCGTCCTC CTGCTACAAA 10093 400 1.58e-06 TGCCGATGAG TCACCCCGTCGTCGTC CCAGCGTCCT 263937 249 2.55e-06 CTCTCTTCAA AGCCGACGACGTCGCT TCAACTCTTC 11760 80 2.97e-06 GTTCTATTCA ACTCGTTGTTGTCGTC GTTTGTACAG 37183 49 4.58e-06 ATGGTATCCA ACATGACGATGTCCCC GCTGTTGGAT 264237 191 4.58e-06 GCAGGTCAAG AGACGACGACGGCGGG CCTCTGATGG 22650 82 4.58e-06 TGGTCGAAGC CGATGATGACGTCGCA GACGAGGACG 6797 211 5.27e-06 TTCAGTTGCA CGTCACCAACGTCGTC TCGGCTCCCT 22608 390 6.04e-06 TGGATCGAAC GGACGTCATCGTCGGA TTGCAATGCT 7956 159 1.01e-05 AGAGAGGTGT CCATGATGATGACGGC TGTCTGACAA 38022 464 1.15e-05 ACTAACCCCC TCCCCACGTCGTCGTG AGTCGTCGTC 874 343 1.29e-05 GCTGACGTTC AGTTCCCGTCGTCCTA ACATGTTCAA 10904 344 1.46e-05 AGTTTCGGCG CCTGAACGACGACGCC ATTCAATCGT 7541 441 1.64e-05 CCGATCACTC CGCCGACGCCGACGGC GAGAGGAGAC 3932 415 1.64e-05 ACGCAACGGT GCACCTCCTCGTCGGC ATTGTTGTTT 16656 381 1.84e-05 ACCAACACAC CCAACACGTCGACCGC GCCGCGACGA 11086 408 1.84e-05 GGTGGGTGGT GCCGGCCGACGACGCC AACAAGAAGC 5785 3 2.85e-05 GG CCTCCTCCACGTCCTC TGCCCGAGGC 3186 12 2.85e-05 TCTGTCGGAC TGTTGTTGTCGTCCTC GTCAATTTGT 1071 177 2.85e-05 GTAGGTAATA CGATGTGGTTGTCGGA GGAGCTATTA 38807 89 3.88e-05 GGACGGTGCA CGATGACTATGGCGGC CGATATGACG 4440 264 4.29e-05 ACGCACCACA CGCTGTTGATGACGGA TGTAAGGTGC 264921 415 5.21e-05 CTGGTTTATG AGACGACGTTGACTTC TATCGATGCA 262674 428 5.21e-05 TGTAACGTGA CGTTCCCGTTGTCCCG GAAGCAGTCT 4710 98 6.29e-05 AGAGGGCGTC GCCTGCGGACGTCGGA TGTGGATACG 23607 369 6.29e-05 CGAATGTTGC ACCGACTGACGTCGTC CTTCTTTGCA 269348 330 8.24e-05 GGAAACACGT ACTCCACTTTGTCCCC CTAATCACTC 21114 485 8.99e-05 GATCATCTGT ACACCTCATCATCGTC 3622 403 9.79e-05 ACCTACCAAA ACACAACGTCATCGCT CGACTTGACA 5815 136 1.06e-04 GAGACAAAGG CGAAGATATCGACGGA GATTTGAGAA 3299 461 1.16e-04 GCAATTTTTT GCTTGCCGACGACGAG AAAAAAACAG 261147 186 1.16e-04 ACTTCCTTGA CGCCGACTACGACCGT CCATCCAGCG 7643 390 1.26e-04 TCCGCCTATT CGTCGTCGATATCCTT CATCTTCCAT 38879 131 1.36e-04 CCACTCCGTG GGTAACCTTCGTCGTA ACCACAAGAA 10414 310 2.64e-04 TCAAGTTTTG CGAAAACGACGATGCA ATGCAAATGG 260757 293 3.02e-04 CGCTTCTTCG ACTTGCCCATGGCGGT TGTTGATGGG 10809 218 3.02e-04 TTCAAAAAAA AGTAGACGTTGGTGGA AGACACATTG 33937 187 3.67e-04 GTGCTCTACG TGACACTATTGACGCC ATGTTGTAAT 262069 315 3.67e-04 CGGCTGATAT GGTTACGATTGTCGTC GGAGGTGAGG 34447 375 4.97e-04 CTGTGAAAAA AGAGAACGATGATGGA TGGGGGGGGA 8670 334 6.94e-04 GTTCTATCGA GGAGGTTCTTGACGTG GTTTTTACGT 42326 369 7.31e-04 GAAGGTCCCG TCAAAACGTCAGCGTG TCAAACTCGA 2769 190 7.70e-04 AAGGAGCGAA TGCAGCCGATGGCGAG GTGATTGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 270357 5.9e-09 350_[+3]_134 261407 5.9e-09 351_[+3]_133 8426 4.3e-08 427_[+3]_57 5367 1.2e-07 425_[+3]_59 260942 3.7e-07 98_[+3]_386 4379 5.5e-07 340_[+3]_144 3113 1.1e-06 244_[+3]_240 10093 1.6e-06 399_[+3]_85 263937 2.6e-06 248_[+3]_236 11760 3e-06 79_[+3]_405 37183 4.6e-06 48_[+3]_436 264237 4.6e-06 190_[+3]_294 22650 4.6e-06 81_[+3]_403 6797 5.3e-06 210_[+3]_274 22608 6e-06 389_[+3]_95 7956 1e-05 158_[+3]_326 38022 1.1e-05 463_[+3]_21 874 1.3e-05 342_[+3]_142 10904 1.5e-05 343_[+3]_141 7541 1.6e-05 440_[+3]_44 3932 1.6e-05 414_[+3]_70 16656 1.8e-05 380_[+3]_104 11086 1.8e-05 407_[+3]_77 5785 2.8e-05 2_[+3]_482 3186 2.8e-05 11_[+3]_473 1071 2.8e-05 176_[+3]_308 38807 3.9e-05 88_[+3]_396 4440 4.3e-05 263_[+3]_221 264921 5.2e-05 414_[+3]_70 262674 5.2e-05 427_[+3]_57 4710 6.3e-05 97_[+3]_387 23607 6.3e-05 368_[+3]_116 269348 8.2e-05 329_[+3]_155 21114 9e-05 484_[+3] 3622 9.8e-05 402_[+3]_82 5815 0.00011 135_[+3]_349 3299 0.00012 460_[+3]_24 261147 0.00012 185_[+3]_299 7643 0.00013 389_[+3]_95 38879 0.00014 130_[+3]_354 10414 0.00026 309_[+3]_175 260757 0.0003 292_[+3]_192 10809 0.0003 217_[+3]_267 33937 0.00037 186_[+3]_298 262069 0.00037 314_[+3]_170 34447 0.0005 374_[+3]_110 8670 0.00069 333_[+3]_151 42326 0.00073 368_[+3]_116 2769 0.00077 189_[+3]_295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=49 270357 ( 351) CCTCGTCGTCGTCGTC 1 261407 ( 352) CCTCGTCGTCGTCGTC 1 8426 ( 428) CGTCGTCGTTGTCGTC 1 5367 ( 426) ACATGACGTCGTCGCC 1 260942 ( 99) AGCCGTCGACGTCGTA 1 4379 ( 341) CCACGACGACGTCCGA 1 3113 ( 245) GGCCGTCGTCGTCCTC 1 10093 ( 400) TCACCCCGTCGTCGTC 1 263937 ( 249) AGCCGACGACGTCGCT 1 11760 ( 80) ACTCGTTGTTGTCGTC 1 37183 ( 49) ACATGACGATGTCCCC 1 264237 ( 191) AGACGACGACGGCGGG 1 22650 ( 82) CGATGATGACGTCGCA 1 6797 ( 211) CGTCACCAACGTCGTC 1 22608 ( 390) GGACGTCATCGTCGGA 1 7956 ( 159) CCATGATGATGACGGC 1 38022 ( 464) TCCCCACGTCGTCGTG 1 874 ( 343) AGTTCCCGTCGTCCTA 1 10904 ( 344) CCTGAACGACGACGCC 1 7541 ( 441) CGCCGACGCCGACGGC 1 3932 ( 415) GCACCTCCTCGTCGGC 1 16656 ( 381) CCAACACGTCGACCGC 1 11086 ( 408) GCCGGCCGACGACGCC 1 5785 ( 3) CCTCCTCCACGTCCTC 1 3186 ( 12) TGTTGTTGTCGTCCTC 1 1071 ( 177) CGATGTGGTTGTCGGA 1 38807 ( 89) CGATGACTATGGCGGC 1 4440 ( 264) CGCTGTTGATGACGGA 1 264921 ( 415) AGACGACGTTGACTTC 1 262674 ( 428) CGTTCCCGTTGTCCCG 1 4710 ( 98) GCCTGCGGACGTCGGA 1 23607 ( 369) ACCGACTGACGTCGTC 1 269348 ( 330) ACTCCACTTTGTCCCC 1 21114 ( 485) ACACCTCATCATCGTC 1 3622 ( 403) ACACAACGTCATCGCT 1 5815 ( 136) CGAAGATATCGACGGA 1 3299 ( 461) GCTTGCCGACGACGAG 1 261147 ( 186) CGCCGACTACGACCGT 1 7643 ( 390) CGTCGTCGATATCCTT 1 38879 ( 131) GGTAACCTTCGTCGTA 1 10414 ( 310) CGAAAACGACGATGCA 1 260757 ( 293) ACTTGCCCATGGCGGT 1 10809 ( 218) AGTAGACGTTGGTGGA 1 33937 ( 187) TGACACTATTGACGCC 1 262069 ( 315) GGTTACGATTGTCGTC 1 34447 ( 375) AGAGAACGATGATGGA 1 8670 ( 334) GGAGGTTCTTGACGTG 1 42326 ( 369) TCAAAACGTCAGCGTG 1 2769 ( 190) TGCAGCCGATGGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 23765 bayes= 8.91886 E= 9.8e-014 20 77 -42 -109 -1226 98 116 -1226 69 -2 -1226 41 -90 105 -127 13 -38 -31 131 -1226 69 22 -1226 23 -1226 173 -201 -51 -112 -148 154 -168 76 -347 -1226 102 -1226 148 -1226 49 -170 -1226 190 -1226 10 -1226 -101 118 -1226 205 -1226 -209 -1226 -2 162 -367 -270 -2 41 65 0 111 -78 -135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 49 E= 9.8e-014 0.306122 0.387755 0.183673 0.122449 0.000000 0.448980 0.551020 0.000000 0.428571 0.224490 0.000000 0.346939 0.142857 0.469388 0.102041 0.285714 0.204082 0.183673 0.612245 0.000000 0.428571 0.265306 0.000000 0.306122 0.000000 0.755102 0.061224 0.183673 0.122449 0.081633 0.714286 0.081633 0.448980 0.020408 0.000000 0.530612 0.000000 0.632653 0.000000 0.367347 0.081633 0.000000 0.918367 0.000000 0.285714 0.000000 0.122449 0.591837 0.000000 0.938776 0.000000 0.061224 0.000000 0.224490 0.755102 0.020408 0.040816 0.224490 0.326531 0.408163 0.265306 0.489796 0.142857 0.102041 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [CA][GC][ATC][CT][GA][ATC]CG[TA][CT]G[TA]C[GC][TGC][CA] -------------------------------------------------------------------------------- Time 71.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10093 1.85e-07 115_[+2(1.93e-06)]_263_\ [+3(1.58e-06)]_33_[+1(2.21e-06)]_36 10414 4.07e-05 92_[+1(2.48e-06)]_232_\ [+2(4.59e-06)]_139 1071 1.05e-05 176_[+3(2.85e-05)]_37_\ [+2(1.44e-05)]_13_[+2(2.42e-06)]_189_[+1(8.86e-06)]_11 10809 5.28e-05 9_[+1(4.11e-07)]_10_[+2(3.31e-05)]_\ 444 10904 4.68e-06 1_[+2(1.85e-07)]_43_[+3(9.79e-05)]_\ 207_[+1(9.27e-05)]_39_[+3(1.46e-05)]_141 11086 1.77e-04 407_[+3(1.84e-05)]_15_\ [+1(5.33e-06)]_46 11760 2.45e-05 79_[+3(2.97e-06)]_93_[+2(2.03e-05)]_\ 265_[+1(2.65e-05)]_10 16656 1.82e-03 267_[+1(1.18e-05)]_97_\ [+3(1.84e-05)]_104 21114 3.26e-06 396_[+2(2.04e-08)]_39_\ [+1(9.27e-05)]_12_[+3(8.99e-05)] 22608 1.87e-05 24_[+2(2.87e-07)]_344_\ [+3(6.04e-06)]_95 22650 1.32e-05 81_[+3(4.58e-06)]_364_\ [+1(4.81e-06)]_23 23607 3.86e-05 178_[+1(2.33e-08)]_174_\ [+3(6.29e-05)]_88_[+1(6.41e-05)]_12 260757 3.35e-05 240_[+2(1.36e-06)]_220_\ [+1(5.90e-06)]_3 260942 4.14e-07 98_[+3(3.66e-07)]_71_[+1(4.11e-07)]_\ 299 261147 6.24e-05 29_[+2(1.21e-06)]_207_\ [+1(3.41e-05)]_227 261407 6.99e-08 55_[+2(9.12e-06)]_275_\ [+3(5.94e-09)]_133 262069 7.74e-04 85_[+2(8.30e-06)]_207_\ [+2(9.81e-05)]_134_[+1(3.14e-05)]_16 262674 3.25e-03 427_[+3(5.21e-05)]_41_\ [+1(1.87e-05)] 263937 1.32e-07 117_[+2(1.32e-05)]_34_\ [+1(4.01e-05)]_60_[+3(2.55e-06)]_26_[+1(4.71e-05)]_159_[+1(1.39e-07)]_19 264237 1.27e-05 190_[+3(4.58e-06)]_4_[+2(4.14e-06)]_\ 204_[+1(4.01e-05)]_24_[+1(6.91e-05)]_9 264921 3.38e-05 40_[+1(5.90e-06)]_175_\ [+2(7.54e-06)]_25_[+2(6.05e-05)]_116_[+3(5.21e-05)]_70 269348 8.68e-05 16_[+2(9.12e-06)]_36_[+2(1.93e-06)]_\ 140_[+2(3.06e-05)]_74_[+3(8.24e-05)]_40_[+1(4.35e-05)]_99 270357 6.99e-08 54_[+2(9.12e-06)]_275_\ [+3(5.94e-09)]_134 2769 4.44e-04 250_[+2(1.32e-05)]_108_\ [+1(5.33e-06)]_105 3113 1.93e-05 212_[+1(3.08e-06)]_16_\ [+3(1.13e-06)]_240 3186 8.60e-05 11_[+3(2.85e-05)]_36_[+1(1.07e-05)]_\ 184_[+2(2.21e-05)]_216 3299 1.64e-03 47_[+1(2.43e-05)]_302_\ [+2(8.01e-05)]_114 33937 6.99e-05 95_[+2(2.87e-07)]_364_\ [+1(5.50e-05)]_4 34447 2.01e-04 213_[+2(6.84e-06)]_240_\ [+1(5.90e-06)]_10 3622 5.72e-09 266_[+2(2.28e-09)]_112_\ [+1(4.71e-05)]_67_[+1(6.96e-07)]_2 37183 9.34e-04 48_[+3(4.58e-06)]_295_\ [+2(2.82e-05)]_120 38022 2.15e-06 297_[+1(1.95e-06)]_96_\ [+2(4.59e-06)]_33_[+3(1.15e-05)]_21 38807 4.50e-06 88_[+3(3.88e-05)]_32_[+1(8.07e-07)]_\ 52_[+2(7.54e-06)]_275 38879 1.74e-04 271_[+2(4.18e-05)]_29_\ [+1(6.91e-05)]_71_[+1(2.76e-06)]_44_[+1(2.04e-05)]_16 3932 1.97e-05 283_[+2(2.21e-05)]_37_\ [+1(4.71e-05)]_57_[+3(1.64e-05)]_46_[+1(3.44e-06)]_8 42326 2.15e-04 148_[+2(1.54e-06)]_68_\ [+2(2.03e-05)]_199_[+1(2.04e-05)]_27 4379 5.64e-06 52_[+2(1.10e-05)]_267_\ [+3(5.46e-07)]_41_[+1(5.09e-05)]_87 4440 1.17e-03 188_[+2(3.35e-06)]_54_\ [+3(4.29e-05)]_221 4710 4.45e-04 24_[+2(3.31e-05)]_52_[+3(6.29e-05)]_\ 339_[+1(2.23e-05)]_32 5367 1.03e-06 205_[+2(3.31e-07)]_199_\ [+3(1.21e-07)]_59 5785 4.71e-03 2_[+3(2.85e-05)]_167_[+2(1.87e-05)]_\ 294 5815 2.45e-05 220_[+2(1.72e-06)]_228_\ [+1(8.86e-06)]_15 6797 4.74e-04 210_[+3(5.27e-06)]_82_\ [+1(1.07e-05)]_176 7541 1.56e-03 440_[+3(1.64e-05)]_8_[+1(1.07e-05)]_\ 20 7643 7.09e-06 108_[+2(4.59e-06)]_290_\ [+1(6.96e-07)]_39_[+1(1.87e-05)]_10 7956 5.74e-04 19_[+2(8.30e-06)]_24_[+2(4.51e-05)]_\ 16_[+2(4.51e-05)]_36_[+3(1.01e-05)]_326 8426 9.51e-05 427_[+3(4.31e-08)]_10_\ [+1(9.95e-05)]_31 8670 8.64e-04 410_[+1(1.14e-07)]_74 874 5.80e-06 20_[+2(3.01e-06)]_92_[+2(9.81e-05)]_\ 8_[+2(6.05e-05)]_159_[+3(1.29e-05)]_108_[+1(8.01e-06)]_18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************