******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/2/2.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 11879 1.0000 500 12035 1.0000 500 22115 1.0000 500 264899 1.0000 500 268544 1.0000 500 268551 1.0000 500 3945 1.0000 500 8819 1.0000 500 bd1251 1.0000 500 bd1447 1.0000 500 bd1676 1.0000 500 bd729 1.0000 500 bd977 1.0000 500 ThpsCp031 1.0000 500 ThpsCp037 1.0000 500 ThpsCp044 1.0000 500 ThpsCp045 1.0000 500 ThpsCp127 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/2/2.seqs.fa -oc motifs/2 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 18 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 9000 N= 18 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.337 C 0.190 G 0.164 T 0.309 Background letter frequencies (from dataset with add-one prior applied): A 0.337 C 0.190 G 0.164 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 13 llr = 189 E-value = 2.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :6:541252:2:a82116686 pos.-specific C a1a519625376:27244422 probability G :1::::224222:::21:::2 matrix T :2::5::2:5:2::265:::: bits 2.6 2.3 * * 2.1 * * 1.8 * * * Relative 1.6 * * * * Entropy 1.3 * * * * (21.0 bits) 1.0 * ** ** ***** *** 0.8 * ** ** * ***** *** 0.5 * ***** ******* ***** 0.3 ******* ************* 0.0 --------------------- Multilevel CACATCCACTCCAACTTAAAA consensus T CA GGGC G CCC C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 8819 446 2.25e-11 AACCGTCGTC CACCTCCCGTCCAACTCCCAA CCTCCTTCGT 268544 30 3.18e-08 CCTTCGTATC CTCCTCCTCCCCAACGTCCCC GTCAAGATCA ThpsCp044 139 4.79e-08 CTTTATTATT CACATCCAGTCTAATTTAAAA TTTTAGGAAA bd977 466 4.79e-08 CTTTATTATT CACATCCAGTCTAATTTAAAA TTTTAGGAAA 268551 438 4.79e-08 CACCAGTCAC CACCCCCTCCCCACCGCACAC ACCACACATG 264899 337 5.82e-08 TCGATCGATA CACCTCCACCACAAATCAAAG CCTCGTCAAC 12035 338 5.82e-08 TCGATCGATA CACCTCCACCACAAATCAAAG CCTCGTCAAC 11879 281 1.10e-07 GCTCCTCTTT CCCCTCGACGCGAACTACAAA GTTGCCACGC ThpsCp037 427 1.69e-07 AGAAATAATC CACAACGGATGGAACTTAAAA AATATTGTCC bd1251 426 1.69e-07 AGAAATAATC CACAACGGATGGAACTTAAAA AATATTGTCC bd729 317 2.50e-07 AGAACCAACT CTCAAACCGTCCAACCTACAA CAACGAACGA 3945 437 2.50e-07 GCCACAACCA CGCAACAAGGCCAACCGCCAA CACTCGTGCT 22115 86 1.35e-06 GTGTCTTCGC CTCAACAGCGCCACCACCACC AATTGACGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8819 2.3e-11 445_[+1]_34 268544 3.2e-08 29_[+1]_450 ThpsCp044 4.8e-08 138_[+1]_341 bd977 4.8e-08 465_[+1]_14 268551 4.8e-08 437_[+1]_42 264899 5.8e-08 336_[+1]_143 12035 5.8e-08 337_[+1]_142 11879 1.1e-07 280_[+1]_199 ThpsCp037 1.7e-07 426_[+1]_53 bd1251 1.7e-07 425_[+1]_54 bd729 2.5e-07 316_[+1]_163 3945 2.5e-07 436_[+1]_43 22115 1.3e-06 85_[+1]_394 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=13 8819 ( 446) CACCTCCCGTCCAACTCCCAA 1 268544 ( 30) CTCCTCCTCCCCAACGTCCCC 1 ThpsCp044 ( 139) CACATCCAGTCTAATTTAAAA 1 bd977 ( 466) CACATCCAGTCTAATTTAAAA 1 268551 ( 438) CACCCCCTCCCCACCGCACAC 1 264899 ( 337) CACCTCCACCACAAATCAAAG 1 12035 ( 338) CACCTCCACCACAAATCAAAG 1 11879 ( 281) CCCCTCGACGCGAACTACAAA 1 ThpsCp037 ( 427) CACAACGGATGGAACTTAAAA 1 bd1251 ( 426) CACAACGGATGGAACTTAAAA 1 bd729 ( 317) CTCAAACCGTCCAACCTACAA 1 3945 ( 437) CGCAACAAGGCCAACCGCCAA 1 22115 ( 86) CTCAACAGCGCCACCACCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 8640 bayes= 9.12938 E= 2.9e-007 -1035 240 -1035 -1035 87 -130 -109 -42 -1035 240 -1035 -1035 67 128 -1035 -1035 19 -130 -1035 80 -213 228 -1035 -1035 -113 170 49 -1035 45 -30 49 -101 -113 128 123 -1035 -1035 70 49 58 -113 187 -9 -1035 -1035 170 49 -101 157 -1035 -1035 -1035 133 -30 -1035 -1035 -113 187 -1035 -101 -213 -30 -9 99 -213 102 -109 58 87 102 -1035 -1035 87 102 -1035 -1035 133 -30 -1035 -1035 87 28 -9 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 13 E= 2.9e-007 0.000000 1.000000 0.000000 0.000000 0.615385 0.076923 0.076923 0.230769 0.000000 1.000000 0.000000 0.000000 0.538462 0.461538 0.000000 0.000000 0.384615 0.076923 0.000000 0.538462 0.076923 0.923077 0.000000 0.000000 0.153846 0.615385 0.230769 0.000000 0.461538 0.153846 0.230769 0.153846 0.153846 0.461538 0.384615 0.000000 0.000000 0.307692 0.230769 0.461538 0.153846 0.692308 0.153846 0.000000 0.000000 0.615385 0.230769 0.153846 1.000000 0.000000 0.000000 0.000000 0.846154 0.153846 0.000000 0.000000 0.153846 0.692308 0.000000 0.153846 0.076923 0.153846 0.153846 0.615385 0.076923 0.384615 0.076923 0.461538 0.615385 0.384615 0.000000 0.000000 0.615385 0.384615 0.000000 0.000000 0.846154 0.153846 0.000000 0.000000 0.615385 0.230769 0.153846 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- C[AT]C[AC][TA]C[CG][AG][CG][TCG]C[CG]AACT[TC][AC][AC]A[AC] -------------------------------------------------------------------------------- Time 2.84 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 14 llr = 196 E-value = 9.0e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 3:3:51:31::811:1641: pos.-specific C 11:1:::::12181:::::1 probability G 67:842735:1118:64:12 matrix T :1711734496:1:a2:687 bits 2.6 2.3 2.1 1.8 Relative 1.6 * * ** Entropy 1.3 * * * * *** (20.2 bits) 1.0 ** * * * ***** 0.8 **** ** ************ 0.5 ******* ************ 0.3 ******************** 0.0 -------------------- Multilevel GGTGATGTGTTACGTGATTT consensus A A GGTAT C TGA G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- ThpsCp045 267 4.76e-09 AACAATGGAA GGTGATGAATTCCGTGAATT ATTAAGTAGT bd977 143 4.76e-09 AACAATGGAA GGTGATGAATTCCGTGAATT ATTAAGTAGT ThpsCp031 287 9.49e-09 TGAAGGACGA GTAGATTGGTTACGTGGTTT AAAAGAAAAT bd1676 318 9.49e-09 TGAAGGACGA GTAGATTGGTTACGTGGTTT AAAAGAAAAT ThpsCp037 381 2.24e-08 TAAACGTTCT GCTGGGGTTTCACGTTATTT AACTCAAAAA bd1251 380 2.24e-08 TAAACGTTCT GCTGGGGTTTCACGTTATTT AACTCAAAAA 11879 412 3.72e-08 CCTGTTGATG GGAGATTTGTTACATGATTG AACACATCAT 268544 374 9.61e-08 TGTGTTCATA GGTGATGGGTCAACTGGATG TGTACTGGTC 264899 213 3.77e-07 ATATTATTGT AGTTGTGTTTGACGTAAATT CAAAAGAACG 12035 214 3.77e-07 ATATTATTGT AGTTGTGTTTGACGTAAATT CAAAAGAACG ThpsCp044 411 7.00e-07 CGGAGTATCA CGTCATGTTTTACGTGAAAT GGCTCATCAA bd729 141 8.74e-07 TGCAAACCAA AGTGGTGAGCTATGTTGTTG ATCTCATTCT 22115 18 1.76e-06 GAGAAGGAAT GGAGTGTGGTTAGATGGTGT GTGTTGATAT 3945 202 2.45e-06 ATGGTTGTTG AGTGTAGAGTTGCGTGATGC GAGAGAAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- ThpsCp045 4.8e-09 266_[+2]_214 bd977 4.8e-09 142_[+2]_338 ThpsCp031 9.5e-09 286_[+2]_194 bd1676 9.5e-09 317_[+2]_163 ThpsCp037 2.2e-08 380_[+2]_100 bd1251 2.2e-08 379_[+2]_101 11879 3.7e-08 411_[+2]_69 268544 9.6e-08 373_[+2]_107 264899 3.8e-07 212_[+2]_268 12035 3.8e-07 213_[+2]_267 ThpsCp044 7e-07 410_[+2]_70 bd729 8.7e-07 140_[+2]_340 22115 1.8e-06 17_[+2]_463 3945 2.5e-06 201_[+2]_279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=14 ThpsCp045 ( 267) GGTGATGAATTCCGTGAATT 1 bd977 ( 143) GGTGATGAATTCCGTGAATT 1 ThpsCp031 ( 287) GTAGATTGGTTACGTGGTTT 1 bd1676 ( 318) GTAGATTGGTTACGTGGTTT 1 ThpsCp037 ( 381) GCTGGGGTTTCACGTTATTT 1 bd1251 ( 380) GCTGGGGTTTCACGTTATTT 1 11879 ( 412) GGAGATTTGTTACATGATTG 1 268544 ( 374) GGTGATGGGTCAACTGGATG 1 264899 ( 213) AGTTGTGTTTGACGTAAATT 1 12035 ( 214) AGTTGTGTTTGACGTAAATT 1 ThpsCp044 ( 411) CGTCATGTTTTACGTGAAAT 1 bd729 ( 141) AGTGGTGAGCTATGTTGTTG 1 22115 ( 18) GGAGTGTGGTTAGATGGTGT 1 3945 ( 202) AGTGTAGAGTTGCGTGATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 8658 bayes= 9.11374 E= 9.0e-009 -24 -141 197 -1045 -1045 -41 212 -111 -24 -1045 -1045 121 -1045 -141 226 -111 57 -1045 112 -111 -224 -1045 39 121 -1045 -1045 212 -11 -24 -1045 80 47 -124 -1045 161 21 -1045 -141 -1045 159 -1045 18 -20 105 122 -41 -120 -1045 -224 205 -120 -211 -124 -141 226 -1045 -1045 -1045 -1045 169 -124 -1045 197 -53 93 -1045 112 -1045 35 -1045 -1045 89 -224 -1045 -20 134 -1045 -141 39 121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 14 E= 9.0e-009 0.285714 0.071429 0.642857 0.000000 0.000000 0.142857 0.714286 0.142857 0.285714 0.000000 0.000000 0.714286 0.000000 0.071429 0.785714 0.142857 0.500000 0.000000 0.357143 0.142857 0.071429 0.000000 0.214286 0.714286 0.000000 0.000000 0.714286 0.285714 0.285714 0.000000 0.285714 0.428571 0.142857 0.000000 0.500000 0.357143 0.000000 0.071429 0.000000 0.928571 0.000000 0.214286 0.142857 0.642857 0.785714 0.142857 0.071429 0.000000 0.071429 0.785714 0.071429 0.071429 0.142857 0.071429 0.785714 0.000000 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.642857 0.214286 0.642857 0.000000 0.357143 0.000000 0.428571 0.000000 0.000000 0.571429 0.071429 0.000000 0.142857 0.785714 0.000000 0.071429 0.214286 0.714286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [GA]G[TA]G[AG][TG][GT][TAG][GT]T[TC]ACGT[GT][AG][TA]T[TG] -------------------------------------------------------------------------------- Time 5.60 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 21 sites = 7 llr = 130 E-value = 5.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 1::331::1::44:4373:4: pos.-specific C ::a371:7:7a:1:37:49:9 probability G :a:::71::::6:9:::1:6: matrix T 9::4::9393::413:311:1 bits 2.6 * 2.3 ** * 2.1 ** * 1.8 ** * * * * Relative 1.6 ** * * * * Entropy 1.3 ** **** *** * * *** (26.9 bits) 1.0 *** ******** * * *** 0.8 *** ******** * ** *** 0.5 *** ******** * ** *** 0.3 ********************* 0.0 --------------------- Multilevel TGCTCGTCTCCGAGACACCGC consensus AA T T AT CATA A sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 264899 443 3.40e-12 GGCGTGGTCG TGCACGTCTCCGTGTCAACGC ACTAATTTAT 12035 444 3.40e-12 GGCGTGGTCG TGCACGTCTCCGTGTCAACGC ACTAATTTAT ThpsCp031 232 2.06e-09 TTATTTCAGC TGCTAGTTTCCAAGAAACCAC TCGTGTTTTA bd1676 263 2.06e-09 TTATTTCAGC TGCTAGTTTCCAAGAAACCAC TCGTGTTTTA 8819 66 3.60e-09 ACGAGTTGGG TGCTCGTCTCCACTACTCCGT CCGTATCGTC 22115 182 1.71e-08 AGACCCGGTG AGCCCATCATCGAGCCATCGC CAGTCGAAAC bd729 13 1.81e-08 ATGACTTCGG TGCCCCGCTTCGTGCCTGTAC GCCATATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 264899 3.4e-12 442_[+3]_37 12035 3.4e-12 443_[+3]_36 ThpsCp031 2.1e-09 231_[+3]_248 bd1676 2.1e-09 262_[+3]_217 8819 3.6e-09 65_[+3]_414 22115 1.7e-08 181_[+3]_298 bd729 1.8e-08 12_[+3]_467 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=7 264899 ( 443) TGCACGTCTCCGTGTCAACGC 1 12035 ( 444) TGCACGTCTCCGTGTCAACGC 1 ThpsCp031 ( 232) TGCTAGTTTCCAAGAAACCAC 1 bd1676 ( 263) TGCTAGTTTCCAAGAAACCAC 1 8819 ( 66) TGCTCGTCTCCACTACTCCGT 1 22115 ( 182) AGCCCATCATCGAGCCATCGC 1 bd729 ( 13) TGCCCCGCTTCGTGCCTGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 8640 bayes= 10.112 E= 5.5e-005 -124 -945 -945 147 -945 -945 261 -945 -945 240 -945 -945 -24 59 -945 47 -24 191 -945 -945 -124 -41 212 -945 -945 -945 -20 147 -945 191 -945 -11 -124 -945 -945 147 -945 191 -945 -11 -945 240 -945 -945 35 -945 180 -945 35 -41 -945 47 -945 -945 239 -111 35 59 -945 -11 -24 191 -945 -945 108 -945 -945 -11 -24 118 -20 -111 -945 218 -945 -111 35 -945 180 -945 -945 218 -945 -111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 7 E= 5.5e-005 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.285714 0.000000 0.428571 0.285714 0.714286 0.000000 0.000000 0.142857 0.142857 0.714286 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.714286 0.000000 0.285714 0.142857 0.000000 0.000000 0.857143 0.000000 0.714286 0.000000 0.285714 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.428571 0.142857 0.000000 0.428571 0.000000 0.000000 0.857143 0.142857 0.428571 0.285714 0.000000 0.285714 0.285714 0.714286 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 0.285714 0.428571 0.142857 0.142857 0.000000 0.857143 0.000000 0.142857 0.428571 0.000000 0.571429 0.000000 0.000000 0.857143 0.000000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- TGC[TAC][CA]GT[CT]T[CT]C[GA][AT]G[ACT][CA][AT][CA]C[GA]C -------------------------------------------------------------------------------- Time 8.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 11879 1.23e-07 130_[+2(7.20e-06)]_130_\ [+1(1.10e-07)]_110_[+2(3.72e-08)]_69 12035 6.72e-15 213_[+2(3.77e-07)]_104_\ [+1(5.82e-08)]_85_[+3(3.40e-12)]_36 22115 1.65e-09 17_[+2(1.76e-06)]_48_[+1(1.35e-06)]_\ 75_[+3(1.71e-08)]_298 264899 6.72e-15 212_[+2(3.77e-07)]_104_\ [+1(5.82e-08)]_85_[+3(3.40e-12)]_37 268544 1.52e-07 29_[+1(3.18e-08)]_323_\ [+2(9.61e-08)]_107 268551 5.50e-04 437_[+1(4.79e-08)]_42 3945 1.83e-05 201_[+2(2.45e-06)]_215_\ [+1(2.50e-07)]_16_[+1(8.35e-05)]_6 8819 2.76e-12 65_[+3(3.60e-09)]_359_\ [+1(2.25e-11)]_34 bd1251 2.06e-07 92_[+2(5.07e-05)]_267_\ [+2(2.24e-08)]_26_[+1(1.69e-07)]_54 bd1447 9.98e-01 500 bd1676 9.96e-10 262_[+3(2.06e-09)]_34_\ [+2(9.49e-09)]_163 bd729 1.91e-10 12_[+3(1.81e-08)]_107_\ [+2(8.74e-07)]_156_[+1(2.50e-07)]_163 bd977 1.49e-08 142_[+2(4.76e-09)]_303_\ [+1(4.79e-08)]_14 ThpsCp031 9.96e-10 231_[+3(2.06e-09)]_34_\ [+2(9.49e-09)]_194 ThpsCp037 2.06e-07 93_[+2(5.07e-05)]_267_\ [+2(2.24e-08)]_26_[+1(1.69e-07)]_53 ThpsCp044 1.42e-06 138_[+1(4.79e-08)]_251_\ [+2(7.00e-07)]_70 ThpsCp045 1.82e-04 266_[+2(4.76e-09)]_214 ThpsCp127 9.98e-01 500 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************