******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/205/205.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10366 1.0000 500 10416 1.0000 500 10885 1.0000 500 11572 1.0000 500 11615 1.0000 500 11832 1.0000 500 12189 1.0000 500 1417 1.0000 500 1456 1.0000 500 17695 1.0000 500 1788 1.0000 500 17961 1.0000 500 1820 1.0000 500 1909 1.0000 500 19639 1.0000 500 21941 1.0000 500 2262 1.0000 500 22766 1.0000 500 22860 1.0000 500 23616 1.0000 500 23706 1.0000 500 24639 1.0000 500 24862 1.0000 500 24932 1.0000 500 25085 1.0000 500 25116 1.0000 500 260789 1.0000 500 262455 1.0000 500 262506 1.0000 500 262743 1.0000 500 262744 1.0000 500 263422 1.0000 500 264007 1.0000 500 26436 1.0000 500 267987 1.0000 500 268157 1.0000 500 269320 1.0000 500 28334 1.0000 500 29506 1.0000 500 30620 1.0000 500 31535 1.0000 500 3154 1.0000 500 33104 1.0000 500 3354 1.0000 500 3448 1.0000 500 34810 1.0000 500 35401 1.0000 500 38266 1.0000 500 3874 1.0000 500 43120 1.0000 500 454 1.0000 500 5638 1.0000 500 5675 1.0000 500 6472 1.0000 500 6979 1.0000 500 6980 1.0000 500 7672 1.0000 500 7940 1.0000 500 8524 1.0000 500 9467 1.0000 500 9880 1.0000 500 bd1893 1.0000 500 bd463 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/205/205.seqs.fa -oc motifs/205 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 63 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 31500 N= 63 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.262 C 0.233 G 0.245 T 0.261 Background letter frequencies (from dataset with add-one prior applied): A 0.262 C 0.233 G 0.245 T 0.261 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 42 llr = 463 E-value = 2.3e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 2141:64:5:45533524325 pos.-specific C 67549:39:953573452761 probability G ::::::::2::1::3::1:21 matrix T 1115144:2:21::1132::2 bits 2.1 1.9 1.7 * * 1.5 * * * Relative 1.3 * * * * Entropy 1.1 ** * * ** * (15.9 bits) 0.8 ** ** * * ** * 0.6 *** ** * * ** ** * 0.4 ************** ** ** 0.2 ********************* 0.0 --------------------- Multilevel CCCTCAACACCACCAACACCA consensus A AC TT T ACAAGCTCA sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 9467 479 8.84e-10 ACCAAAGCAA CCCTCTTCTCCACCGATACCA A 264007 478 8.84e-10 ACCAAAGCAA CCCTCTTCTCCACCGATACCA AA 10416 169 1.65e-08 AATCGTATCT ACCTCAACACACCCACCTCCA TCAGCCATCA 5638 454 3.89e-08 TTGTTCTGCT ACACCACCACTCACCACACCA CCGTCTCGTA 38266 479 8.54e-08 ACTTCTCATA CCCCCACCTCTACAAACAACA A 24932 460 2.02e-07 CTCGCAATCG CCCACTCCGCCGCCACCACCA ACGATCATAA 30620 359 2.31e-07 CACCTCCTCG CCCTCTACACAACCTACACAC TCCTCTCGTC 268157 348 3.01e-07 CGTCCACACT CCCCCACCGCCGCCGCCGCCG ACGATAAACA 262455 259 3.01e-07 CGGCAATGCC CAACCAACACAACCGACCAAA TTAGTAAGTT 19639 89 3.01e-07 TTTGATGATA CCATCAACACACAACAAAACA ACGTACTGGA 263422 80 3.43e-07 ACCCCAAACC ACCCCTCCTCCACAGCCACCG GCTGCTGGCA bd463 463 3.90e-07 CACACCTCTC CTACCAACGCCAACGCTAACA GCATGATAGA 24862 232 3.90e-07 AAGACGAAAG CTACCAACACAAACAACACAC CTCCGGGTTT 1820 461 3.90e-07 TAGAAAAGCG CCCTCTCCACAAACCCAACGC CAGCGAACCC 17695 435 3.90e-07 AGAATGACTT CCACCAACGCCCCCCCCCCGT CTCACTCCCA 24639 416 4.42e-07 GGAGCTGTTG CCCTTACCACCACCAAAACGA CTACGTCTAA 10366 111 7.17e-07 AACGCGATTG CCACCAAGACCGACGACTCCA TCGGCGGCCT 6980 404 1.75e-06 CAGCCAGCAC CCATCATCACAACAGCATCTA CCCACCACAT 269320 408 1.75e-06 TCGACGACCT CCCTCTTCACAAAATCCGCCG ACGACGACGA 35401 470 2.15e-06 CTACATCAGC AACCCATCACCCACCACCACT TCGGGACACC 267987 469 2.38e-06 AATTTGGATC TTTTCTTCACAGCCAACACCA ACAAGCAGTT 21941 427 2.63e-06 TGCTCCTTCG CCTCCACCACACCACCTTCAA ATCAAACGAG 11832 479 2.63e-06 GCCTCACCGA TATCCAACTCCACCAACACGA C 31535 477 2.90e-06 CAACTACACA ACCACAACACCAACGCAACAC ACC 1788 214 3.20e-06 CTCACCGTCA ATATCAACACCAACAATCCAT GCCGGCACGA 12189 344 3.88e-06 CAACAACCCG ACAACAACTCAACAGCTGCCA CTCCAGTGAT 23706 372 4.26e-06 GACACCAGAA CCATCATCTCTCACCACTTCA TACATCATAT 262743 58 5.12e-06 CTCTACCAAA CAAGCAACTCCACCGTCACCA CCGCAGATAT 22766 469 5.61e-06 GCTGGATCCT CCACCTTCGCCTACGAAGCCG AGGTACACAA 8524 205 6.70e-06 CACGGTCGAG CCACCATCCCAAACGTTCCCG CCACACAGCT 454 81 1.31e-05 GAAGTCAATC CCATCAACTGATCCACCTCCT CAGAATCACG 23616 91 1.66e-05 AATCATGAGA CACTCTTCAGCACCCATTACG TAATCTTCAT 26436 409 1.79e-05 AGATATGAGT CCATTTAAACCAAAAACAACA GGTTTGAGGT 6472 369 2.08e-05 CCAAGCGTTG CCCCCACCAACAACATTGACA CTGAACAACG 7672 255 2.60e-05 CACTTCTATG CCCTCTCCCCTCCCCATCCTT TAGCGCTAAG 3874 296 2.99e-05 GTACCACCGC TCACCTTCACTTCACCACCGA GTTGAACCCT 25085 470 3.94e-05 CCGTCTTCCG ATCTCTCCACACACACTGAAT CACGCTCGCC 11572 163 4.51e-05 CGTTGATCAG TACACATCACTCACAACAAAC GTGGTACCGA 43120 452 6.21e-05 TCGATAGCAA TCTTCATCGCTCCCTCTCACT GTGTTTGTGC 1909 470 6.21e-05 CGTGATAGTA ACATCTCAACAGAAGAACACA AACAATCAAC 10885 313 6.21e-05 GCCTTCTTCG TCTTCTTGGCCACCAACTCGC TATCCTCGCC 11615 479 8.41e-05 TTGTTTTGCC CTCTTTTCTCTGAACACCCGA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 9467 8.8e-10 478_[+1]_1 264007 8.8e-10 477_[+1]_2 10416 1.6e-08 168_[+1]_311 5638 3.9e-08 453_[+1]_26 38266 8.5e-08 478_[+1]_1 24932 2e-07 459_[+1]_20 30620 2.3e-07 358_[+1]_121 268157 3e-07 347_[+1]_132 262455 3e-07 258_[+1]_221 19639 3e-07 88_[+1]_391 263422 3.4e-07 79_[+1]_400 bd463 3.9e-07 462_[+1]_17 24862 3.9e-07 231_[+1]_248 1820 3.9e-07 460_[+1]_19 17695 3.9e-07 434_[+1]_45 24639 4.4e-07 415_[+1]_64 10366 7.2e-07 110_[+1]_369 6980 1.7e-06 403_[+1]_76 269320 1.7e-06 407_[+1]_72 35401 2.1e-06 469_[+1]_10 267987 2.4e-06 468_[+1]_11 21941 2.6e-06 426_[+1]_53 11832 2.6e-06 478_[+1]_1 31535 2.9e-06 476_[+1]_3 1788 3.2e-06 213_[+1]_266 12189 3.9e-06 343_[+1]_136 23706 4.3e-06 371_[+1]_108 262743 5.1e-06 57_[+1]_422 22766 5.6e-06 468_[+1]_11 8524 6.7e-06 204_[+1]_275 454 1.3e-05 80_[+1]_399 23616 1.7e-05 90_[+1]_389 26436 1.8e-05 408_[+1]_71 6472 2.1e-05 368_[+1]_111 7672 2.6e-05 254_[+1]_225 3874 3e-05 295_[+1]_184 25085 3.9e-05 469_[+1]_10 11572 4.5e-05 162_[+1]_317 43120 6.2e-05 451_[+1]_28 1909 6.2e-05 469_[+1]_10 10885 6.2e-05 312_[+1]_167 11615 8.4e-05 478_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=42 9467 ( 479) CCCTCTTCTCCACCGATACCA 1 264007 ( 478) CCCTCTTCTCCACCGATACCA 1 10416 ( 169) ACCTCAACACACCCACCTCCA 1 5638 ( 454) ACACCACCACTCACCACACCA 1 38266 ( 479) CCCCCACCTCTACAAACAACA 1 24932 ( 460) CCCACTCCGCCGCCACCACCA 1 30620 ( 359) CCCTCTACACAACCTACACAC 1 268157 ( 348) CCCCCACCGCCGCCGCCGCCG 1 262455 ( 259) CAACCAACACAACCGACCAAA 1 19639 ( 89) CCATCAACACACAACAAAACA 1 263422 ( 80) ACCCCTCCTCCACAGCCACCG 1 bd463 ( 463) CTACCAACGCCAACGCTAACA 1 24862 ( 232) CTACCAACACAAACAACACAC 1 1820 ( 461) CCCTCTCCACAAACCCAACGC 1 17695 ( 435) CCACCAACGCCCCCCCCCCGT 1 24639 ( 416) CCCTTACCACCACCAAAACGA 1 10366 ( 111) CCACCAAGACCGACGACTCCA 1 6980 ( 404) CCATCATCACAACAGCATCTA 1 269320 ( 408) CCCTCTTCACAAAATCCGCCG 1 35401 ( 470) AACCCATCACCCACCACCACT 1 267987 ( 469) TTTTCTTCACAGCCAACACCA 1 21941 ( 427) CCTCCACCACACCACCTTCAA 1 11832 ( 479) TATCCAACTCCACCAACACGA 1 31535 ( 477) ACCACAACACCAACGCAACAC 1 1788 ( 214) ATATCAACACCAACAATCCAT 1 12189 ( 344) ACAACAACTCAACAGCTGCCA 1 23706 ( 372) CCATCATCTCTCACCACTTCA 1 262743 ( 58) CAAGCAACTCCACCGTCACCA 1 22766 ( 469) CCACCTTCGCCTACGAAGCCG 1 8524 ( 205) CCACCATCCCAAACGTTCCCG 1 454 ( 81) CCATCAACTGATCCACCTCCT 1 23616 ( 91) CACTCTTCAGCACCCATTACG 1 26436 ( 409) CCATTTAAACCAAAAACAACA 1 6472 ( 369) CCCCCACCAACAACATTGACA 1 7672 ( 255) CCCTCTCCCCTCCCCATCCTT 1 3874 ( 296) TCACCTTCACTTCACCACCGA 1 25085 ( 470) ATCTCTCCACACACACTGAAT 1 11572 ( 163) TACACATCACTCACAACAAAC 1 43120 ( 452) TCTTCATCGCTCCCTCTCACT 1 1909 ( 470) ACATCTCAACAGAAGAACACA 1 10885 ( 313) TCTTCTTGGCCACCAACTCGC 1 11615 ( 479) CTCTTTTCTCTGAACACCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 30240 bayes= 10.9959 E= 2.3e-023 -29 147 -1204 -87 -87 162 -1204 -87 71 96 -1204 -113 -146 71 -336 94 -1204 200 -1204 -187 119 -1204 -1204 63 45 30 -1204 45 -246 196 -236 -1204 107 -229 -55 -13 -345 200 -236 -1204 45 96 -1204 -45 100 17 -78 -187 79 123 -1204 -1204 0 166 -1204 -1204 35 17 44 -187 107 71 -1204 -187 -46 117 -1204 13 71 3 -78 -45 13 157 -1204 -345 -46 135 -55 -245 107 -70 -78 -65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 42 E= 2.3e-023 0.214286 0.642857 0.000000 0.142857 0.142857 0.714286 0.000000 0.142857 0.428571 0.452381 0.000000 0.119048 0.095238 0.380952 0.023810 0.500000 0.000000 0.928571 0.000000 0.071429 0.595238 0.000000 0.000000 0.404762 0.357143 0.285714 0.000000 0.357143 0.047619 0.904762 0.047619 0.000000 0.547619 0.047619 0.166667 0.238095 0.023810 0.928571 0.047619 0.000000 0.357143 0.452381 0.000000 0.190476 0.523810 0.261905 0.142857 0.071429 0.452381 0.547619 0.000000 0.000000 0.261905 0.738095 0.000000 0.000000 0.333333 0.261905 0.333333 0.071429 0.547619 0.380952 0.000000 0.071429 0.190476 0.523810 0.000000 0.285714 0.428571 0.238095 0.142857 0.190476 0.285714 0.690476 0.000000 0.023810 0.190476 0.595238 0.166667 0.047619 0.547619 0.142857 0.142857 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA]C[CA][TC]C[AT][ATC]C[AT]C[CA][AC][CA][CA][AGC][AC][CT][AC][CA]CA -------------------------------------------------------------------------------- Time 29.41 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 20 sites = 43 llr = 450 E-value = 7.6e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 13:15::3:::2::1423:: pos.-specific C ::1:::11::::33::1::: probability G 8:96:884647443746383 matrix T 16:25211463444122526 bits 2.1 1.9 1.7 1.5 Relative 1.3 * * * Entropy 1.1 * * ** * * * (15.1 bits) 0.8 * * *** *** * 0.6 ******* *** * ** 0.4 ******* ***** ****** 0.2 ******************** 0.0 -------------------- Multilevel GTGGAGGGGTGGGTGAGTGT consensus A TT ATGTTTG G A G sequence CC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 267987 394 5.38e-11 GCTCGCGGGC GTGGTGGGGTGGGCGGGTGT AAAGCGTGAG 7672 6 4.48e-08 CTGTG GAGGAGGGGTGGTTTGGGGT GGTTCATGTT 3354 105 4.48e-08 GGTGGTGGTA GAGTTGGGGTGTCGGAGGGT GCAGCGGTGG 31535 350 6.18e-08 GTTTTGTTGC GTGGTGCGGTGTTTGAGGGG GGAAGCGGTC 454 185 8.44e-08 TCCTTCGTAG GAGGAGGGGTTGTCGAGTTT GTCACCTAGG 9467 250 1.14e-07 ATTCTTGGGA GTGTTTGGTTGTTCGAGTGT GTTGAATGGT 264007 249 1.14e-07 ATTCTTGGGA GTGTTTGGTTGTTCGAGTGT GTTGAATGGT 38266 316 1.32e-07 CGTCTCGCAA TTGTTGGAGTGTTGGAGTGT TTGGCTAACA 262455 72 2.66e-07 GTGTGGGTGG GAGGAGGGGAGGCTGGGTGT GAAAATGGGC 6472 234 3.95e-07 CAGGTGGCTT GAGGAGGATTGATTGAATGG ATCGTAATTA 29506 358 3.95e-07 CATTGTTGAG GTGGAGGAGTTGGTGTGTTG TACCAAAGTC 11572 298 5.09e-07 GAACAACATG GTGATGGAGTGATCGAATGT GGAAAGTGAT 2262 367 6.53e-07 AAACCGTTCC GTGTTGGCTTTGTTGTGTGT TGCTGAGGAC 23616 354 9.36e-07 AGAGGAGGAG GTGGAGGAGTTTGGAGTAGT TCATGATGTG 34810 81 1.05e-06 AATGTAGCAG GTGGTGGTTGTTGCTGGTGT CGACTAGGGC 1909 94 1.05e-06 CTCTGCTGTC GTGGAGGATGGATGGTGATT GGCTTCTTCC 25116 2 2.05e-06 G GTGAATGAGTGGTTGGGTTG TGATGGAAGC 24862 11 2.82e-06 GGAGCACATG GTGTTGCTTTGTGTGGATGT TTGATTGTAG 17961 395 2.82e-06 ACGACGCGAC GTGGTTGGGGGGGGGAAATG GCGGGCTAAG 262743 242 6.82e-06 ATGATGTATT GTGGAGGTGTGTCTTTAGGG ATGAAGCTAC 268157 107 8.19e-06 TGAGGTTAAA GGGATGGATGTTTTGTGTGT CAGTGTTATC 6979 85 8.96e-06 ACTTGCCCAC GTAAATGAGTGGGTGGGTGG TGAAGATTTC 28334 255 8.96e-06 ATCAAGGAGG GAGGAGGCTGGTTGGGTGGC AGCGTTCTCG 269320 27 9.80e-06 TCTTGACGAT GTGTTGGGTTGTGGTTGATG CACCGACTTC 263422 301 9.80e-06 TTTTGTGTTA GAGGTGGTGGTGCCAATGGT CCTTGCATTG 33104 107 1.27e-05 GTTCGCAACG GTGAAGGCGGGTGCAGAAGG TGCGAAAGTT 24639 236 1.64e-05 TACTGTAGTT GTAGTGTAGGGTGCTGGTGT TGTTGTTGAT 22860 348 1.64e-05 ATGGCTGCTG GCGGCGGGGGGGGGGAGATT CCTAGCCATC 260789 355 1.93e-05 CAGCACAGAC GAGGAGCGGGTAGTAGTGGT AGTAGTCGTA 1788 34 2.09e-05 CAACGAAGAG ACGGAGGAGGGGGAGGGGGT TTATTTCCGA 1456 237 2.09e-05 CAACTACAGT TTGGAGCATTGGCCGATGTT GATGTAGTCC 11832 348 2.09e-05 GAAGGACTTG AAGATGGAGGGGTGGGGTGA CAGTTGACGG 11615 215 2.09e-05 GGCAGTGTTC TTGGAGGATGTGGCAGTAGG TTGATTTGCC bd463 143 2.86e-05 ACCGCTCTGC AAGGAGTGGTTGCGGGAAGT TGGACACAGG 262744 123 3.08e-05 GGTATAGTGA GAGTATTGGTGGTCGTCTGT GGTTCATTTC 19639 334 3.08e-05 CGAGGACTAC GACGATCGGGGAGGGAGAGG ATCGGTGAGT 26436 435 3.32e-05 CAACAGGTTT GAGGTGGCTGTTCTGACTGA TGTGGCCGCT 25085 80 3.32e-05 GAGGCGCCTG GAGGAGGAGGTTCGAATGGC GGAGGACAGC 3154 424 4.77e-05 AGAGCCTCAC GTCTTGGCGGGAGAGAGAGG CGGCAAAAGA 17695 326 5.11e-05 CGACTGACGA TGCGTGGTTTGTCTGAGAGT GGTGGGTAGC 5638 21 5.48e-05 CTTTTGCTTC GTCGTGGGTTGTCTCACTGG CTGCGTTGGT 1820 26 5.86e-05 ATTGGTACGT TTGGAGTGTGGATGTGAAGT GATGAGCTCG 8524 413 1.18e-04 TGCAAGGGCC TTGTATCGTTTGCTGTTGGT GGTAAATTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 267987 5.4e-11 393_[+2]_87 7672 4.5e-08 5_[+2]_475 3354 4.5e-08 104_[+2]_376 31535 6.2e-08 349_[+2]_131 454 8.4e-08 184_[+2]_296 9467 1.1e-07 249_[+2]_231 264007 1.1e-07 248_[+2]_232 38266 1.3e-07 315_[+2]_165 262455 2.7e-07 71_[+2]_409 6472 3.9e-07 233_[+2]_247 29506 3.9e-07 357_[+2]_123 11572 5.1e-07 297_[+2]_183 2262 6.5e-07 366_[+2]_114 23616 9.4e-07 353_[+2]_127 34810 1.1e-06 80_[+2]_400 1909 1.1e-06 93_[+2]_387 25116 2.1e-06 1_[+2]_479 24862 2.8e-06 10_[+2]_470 17961 2.8e-06 394_[+2]_86 262743 6.8e-06 241_[+2]_239 268157 8.2e-06 106_[+2]_374 6979 9e-06 84_[+2]_396 28334 9e-06 254_[+2]_226 269320 9.8e-06 26_[+2]_454 263422 9.8e-06 300_[+2]_180 33104 1.3e-05 106_[+2]_374 24639 1.6e-05 235_[+2]_245 22860 1.6e-05 347_[+2]_133 260789 1.9e-05 354_[+2]_126 1788 2.1e-05 33_[+2]_447 1456 2.1e-05 236_[+2]_244 11832 2.1e-05 347_[+2]_133 11615 2.1e-05 214_[+2]_266 bd463 2.9e-05 142_[+2]_338 262744 3.1e-05 122_[+2]_358 19639 3.1e-05 333_[+2]_147 26436 3.3e-05 434_[+2]_46 25085 3.3e-05 79_[+2]_401 3154 4.8e-05 423_[+2]_57 17695 5.1e-05 325_[+2]_155 5638 5.5e-05 20_[+2]_460 1820 5.9e-05 25_[+2]_455 8524 0.00012 412_[+2]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=20 seqs=43 267987 ( 394) GTGGTGGGGTGGGCGGGTGT 1 7672 ( 6) GAGGAGGGGTGGTTTGGGGT 1 3354 ( 105) GAGTTGGGGTGTCGGAGGGT 1 31535 ( 350) GTGGTGCGGTGTTTGAGGGG 1 454 ( 185) GAGGAGGGGTTGTCGAGTTT 1 9467 ( 250) GTGTTTGGTTGTTCGAGTGT 1 264007 ( 249) GTGTTTGGTTGTTCGAGTGT 1 38266 ( 316) TTGTTGGAGTGTTGGAGTGT 1 262455 ( 72) GAGGAGGGGAGGCTGGGTGT 1 6472 ( 234) GAGGAGGATTGATTGAATGG 1 29506 ( 358) GTGGAGGAGTTGGTGTGTTG 1 11572 ( 298) GTGATGGAGTGATCGAATGT 1 2262 ( 367) GTGTTGGCTTTGTTGTGTGT 1 23616 ( 354) GTGGAGGAGTTTGGAGTAGT 1 34810 ( 81) GTGGTGGTTGTTGCTGGTGT 1 1909 ( 94) GTGGAGGATGGATGGTGATT 1 25116 ( 2) GTGAATGAGTGGTTGGGTTG 1 24862 ( 11) GTGTTGCTTTGTGTGGATGT 1 17961 ( 395) GTGGTTGGGGGGGGGAAATG 1 262743 ( 242) GTGGAGGTGTGTCTTTAGGG 1 268157 ( 107) GGGATGGATGTTTTGTGTGT 1 6979 ( 85) GTAAATGAGTGGGTGGGTGG 1 28334 ( 255) GAGGAGGCTGGTTGGGTGGC 1 269320 ( 27) GTGTTGGGTTGTGGTTGATG 1 263422 ( 301) GAGGTGGTGGTGCCAATGGT 1 33104 ( 107) GTGAAGGCGGGTGCAGAAGG 1 24639 ( 236) GTAGTGTAGGGTGCTGGTGT 1 22860 ( 348) GCGGCGGGGGGGGGGAGATT 1 260789 ( 355) GAGGAGCGGGTAGTAGTGGT 1 1788 ( 34) ACGGAGGAGGGGGAGGGGGT 1 1456 ( 237) TTGGAGCATTGGCCGATGTT 1 11832 ( 348) AAGATGGAGGGGTGGGGTGA 1 11615 ( 215) TTGGAGGATGTGGCAGTAGG 1 bd463 ( 143) AAGGAGTGGTTGCGGGAAGT 1 262744 ( 123) GAGTATTGGTGGTCGTCTGT 1 19639 ( 334) GACGATCGGGGAGGGAGAGG 1 26436 ( 435) GAGGTGGCTGTTCTGACTGA 1 25085 ( 80) GAGGAGGAGGTTCGAATGGC 1 3154 ( 424) GTCTTGGCGGGAGAGAGAGG 1 17695 ( 326) TGCGTGGTTTGTCTGAGAGT 1 5638 ( 21) GTCGTGGGTTGTCTCACTGG 1 1820 ( 26) TTGGAGTGTGGATGTGAAGT 1 8524 ( 413) TTGTATCGTTTGCTGTTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 30303 bayes= 9.78962 E= 7.6e-016 -191 -1207 169 -90 32 -232 -239 116 -249 -132 181 -1207 -91 -1207 136 -16 97 -332 -1207 83 -1207 -1207 173 -49 -1207 -74 165 -149 41 -100 77 -116 -1207 -1207 130 60 -349 -1207 77 110 -1207 -1207 151 21 -68 -1207 77 68 -1207 14 60 51 -249 26 30 51 -91 -332 151 -90 68 -1207 69 -49 -49 -174 119 -49 9 -1207 6 83 -1207 -1207 173 -49 -249 -232 30 121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 43 E= 7.6e-016 0.069767 0.000000 0.790698 0.139535 0.325581 0.046512 0.046512 0.581395 0.046512 0.093023 0.860465 0.000000 0.139535 0.000000 0.627907 0.232558 0.511628 0.023256 0.000000 0.465116 0.000000 0.000000 0.813953 0.186047 0.000000 0.139535 0.767442 0.093023 0.348837 0.116279 0.418605 0.116279 0.000000 0.000000 0.604651 0.395349 0.023256 0.000000 0.418605 0.558140 0.000000 0.000000 0.697674 0.302326 0.162791 0.000000 0.418605 0.418605 0.000000 0.255814 0.372093 0.372093 0.046512 0.279070 0.302326 0.372093 0.139535 0.023256 0.697674 0.139535 0.418605 0.000000 0.395349 0.186047 0.186047 0.069767 0.558140 0.186047 0.279070 0.000000 0.255814 0.465116 0.000000 0.000000 0.813953 0.186047 0.046512 0.046512 0.302326 0.604651 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- G[TA]G[GT][AT]GG[GA][GT][TG][GT][GT][GTC][TGC]G[AG]G[TAG]G[TG] -------------------------------------------------------------------------------- Time 58.43 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 37 llr = 371 E-value = 1.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 42:111::132::4:: pos.-specific C :2:112114::4::31 probability G 56:95:65361:a3:9 matrix T 1:a:46342176:37: bits 2.1 * 1.9 * * 1.7 * * 1.5 * * * Relative 1.3 ** * * Entropy 1.1 ** ** ** (14.5 bits) 0.8 ** **** ** 0.6 **** *** **** ** 0.4 ******** ******* 0.2 **************** 0.0 ---------------- Multilevel GGTGGTGGCGTTGATG consensus AA TCTTGAAC GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 3354 130 3.43e-08 AGGGTGCAGC GGTGGTGGGGTCGACG TCGGCTCGTT 1909 59 1.54e-07 TTCATTGTGA GGTGGCGGTGTTGGTG AATAGGCATC 23706 39 2.23e-07 CAGGTGCGTA GCTGGTGTCGTCGTTG CTTTATACAA 3874 15 3.74e-07 TAGTCTTTAC AGTGTTGTTGTTGTTG CAGTGTCACG 34810 214 5.99e-07 GGGGTTGTTC AGTGCTGGGGTTGTTG TGTTTGTCTC 10366 41 5.99e-07 AGACACACAG AGTGGTTGAGTCGATG CTGCCGACGC 262455 353 1.22e-06 CTCGCACGAA GATGTCGTGGTCGTTG GTATTGGCCG 263422 237 1.40e-06 TACACCGTCC GCTGCTGTGGTTGATG CAAGTGATAT 9467 300 2.05e-06 AAACGAATAG TGTGGTGGGGACGGTG TACGATGACG 267987 310 2.05e-06 ACATTGCGTT AGTGTTCTGGTCGTTG GTGAGGATTG 264007 299 2.05e-06 AAACGAATAG TGTGGTGGGGACGGTG TACGATGACG 24932 38 2.32e-06 TATCTTAATA AGTGTTGTCATTGATC TCGGATAAAA 3448 157 3.30e-06 GGTGCCGACC GATGTCGTGGATGATG TTCCCAAGTG 22860 166 4.62e-06 ATGAACTGCC GATGTCTTCGTCGGCG ACAGGTGATG 17961 195 4.62e-06 ACGACGTCGC GGTGTTTGGAGCGGTG AAGGCAACGC 28334 17 7.74e-06 TGCCGCTTCT AGTGGAGTCATTGTCG AGTCGATCAC 5675 50 8.54e-06 CAAAGAAATT GATGTTTGTGATGACG ACATGGTGTA 3154 191 8.54e-06 TGGAGAGTCC AATGCTTTGATTGATG ACGAATACTT 262744 159 8.54e-06 TTTCATCAGG TGTGGTCTGGTTGACG TCGACGTTCT 29506 57 1.25e-05 ATCCGCCGCA GGTACCGGCGTTGATG AGAAGGTCGG 25116 365 1.25e-05 GAAGGCCGCC GATGGAGTCGTCGGTC TTGGTGGCAA bd463 414 1.36e-05 GAGCAACAGC GGTGGATGTAACGATG AGAGTGCCGC 22766 273 1.36e-05 GTAGTTGTAC GATGGCTGCATTGTTC GGATTTCAAA 35401 175 1.49e-05 AAGGGCAATC AGTGTTGAAGTCGATG ACACCGCCCA 11572 322 1.77e-05 GAATGTGGAA AGTGATGGAGTCGTCG CGAGCAGCTG 454 318 2.10e-05 GTGGTTGAGG AGTAGTGTCGTCGGTC GTCGGAAGTG 43120 236 2.10e-05 ACAGTAACTC GCTGGACTCATTGATG AAATTCATAG 9880 260 2.47e-05 TCGTGGAATT TGTGTTGCCATCGTCG GCCACGCGTA 24639 93 2.68e-05 GCACAAAATT ACTGTTGGCAGTGGCG GTGTTTTTTT 6980 50 3.13e-05 AAAGTGTACC AATGGTTGCGATGGCC GTATTGCTGA 11832 18 3.13e-05 TGAATGGAAA GGTGTTTCGGTTGAGG TGAACTCTGC 25085 160 3.38e-05 CGGCGGCGGA AATGGCGGTAGCGGTG TGTGAAGTGA 23616 136 3.64e-05 GTATACTCTC GGTTGCTGTATTGATG TATCTCCGAC 2262 46 4.22e-05 AAGACGGAGA GGTCGTTTCAATGGCG TTGGTAGTAG 31535 333 5.22e-05 CACCATGGTT GCTGTTCGTTTTGTTG CGTGGTGCGG 268157 60 7.29e-05 CACTTGGGAG GCTCTTGCCGATGATG ATTTATTTTA 262743 323 9.37e-05 ATTTGACGGC GGTGACTGATTTGGTG CCAAAAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 3354 3.4e-08 129_[+3]_355 1909 1.5e-07 58_[+3]_426 23706 2.2e-07 38_[+3]_446 3874 3.7e-07 14_[+3]_470 34810 6e-07 213_[+3]_271 10366 6e-07 40_[+3]_444 262455 1.2e-06 352_[+3]_132 263422 1.4e-06 236_[+3]_248 9467 2e-06 299_[+3]_185 267987 2e-06 309_[+3]_175 264007 2e-06 298_[+3]_186 24932 2.3e-06 37_[+3]_447 3448 3.3e-06 156_[+3]_328 22860 4.6e-06 165_[+3]_319 17961 4.6e-06 194_[+3]_290 28334 7.7e-06 16_[+3]_468 5675 8.5e-06 49_[+3]_435 3154 8.5e-06 190_[+3]_294 262744 8.5e-06 158_[+3]_326 29506 1.2e-05 56_[+3]_428 25116 1.2e-05 364_[+3]_120 bd463 1.4e-05 413_[+3]_71 22766 1.4e-05 272_[+3]_212 35401 1.5e-05 174_[+3]_310 11572 1.8e-05 321_[+3]_163 454 2.1e-05 317_[+3]_167 43120 2.1e-05 235_[+3]_249 9880 2.5e-05 259_[+3]_225 24639 2.7e-05 92_[+3]_392 6980 3.1e-05 49_[+3]_435 11832 3.1e-05 17_[+3]_467 25085 3.4e-05 159_[+3]_325 23616 3.6e-05 135_[+3]_349 2262 4.2e-05 45_[+3]_439 31535 5.2e-05 332_[+3]_152 268157 7.3e-05 59_[+3]_425 262743 9.4e-05 322_[+3]_162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=37 3354 ( 130) GGTGGTGGGGTCGACG 1 1909 ( 59) GGTGGCGGTGTTGGTG 1 23706 ( 39) GCTGGTGTCGTCGTTG 1 3874 ( 15) AGTGTTGTTGTTGTTG 1 34810 ( 214) AGTGCTGGGGTTGTTG 1 10366 ( 41) AGTGGTTGAGTCGATG 1 262455 ( 353) GATGTCGTGGTCGTTG 1 263422 ( 237) GCTGCTGTGGTTGATG 1 9467 ( 300) TGTGGTGGGGACGGTG 1 267987 ( 310) AGTGTTCTGGTCGTTG 1 264007 ( 299) TGTGGTGGGGACGGTG 1 24932 ( 38) AGTGTTGTCATTGATC 1 3448 ( 157) GATGTCGTGGATGATG 1 22860 ( 166) GATGTCTTCGTCGGCG 1 17961 ( 195) GGTGTTTGGAGCGGTG 1 28334 ( 17) AGTGGAGTCATTGTCG 1 5675 ( 50) GATGTTTGTGATGACG 1 3154 ( 191) AATGCTTTGATTGATG 1 262744 ( 159) TGTGGTCTGGTTGACG 1 29506 ( 57) GGTACCGGCGTTGATG 1 25116 ( 365) GATGGAGTCGTCGGTC 1 bd463 ( 414) GGTGGATGTAACGATG 1 22766 ( 273) GATGGCTGCATTGTTC 1 35401 ( 175) AGTGTTGAAGTCGATG 1 11572 ( 322) AGTGATGGAGTCGTCG 1 454 ( 318) AGTAGTGTCGTCGGTC 1 43120 ( 236) GCTGGACTCATTGATG 1 9880 ( 260) TGTGTTGCCATCGTCG 1 24639 ( 93) ACTGTTGGCAGTGGCG 1 6980 ( 50) AATGGTTGCGATGGCC 1 11832 ( 18) GGTGTTTCGGTTGAGG 1 25085 ( 160) AATGGCGGTAGCGGTG 1 23616 ( 136) GGTTGCTGTATTGATG 1 2262 ( 46) GGTCGTTTCAATGGCG 1 31535 ( 333) GCTGTTCGTTTTGTTG 1 268157 ( 60) GCTCTTGCCGATGATG 1 262743 ( 323) GGTGACTGATTTGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 30555 bayes= 9.85317 E= 1.5e-007 43 -1185 114 -127 -11 -52 128 -1185 -1185 -1185 -1185 194 -227 -210 182 -327 -227 -111 91 54 -127 6 -1185 131 -1185 -111 121 31 -327 -152 99 64 -127 70 41 -46 31 -1185 134 -227 -28 -1185 -159 143 -1185 89 -1185 112 -1185 -1185 203 -1185 63 -1185 41 5 -1185 22 -318 143 -1185 -78 182 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 37 E= 1.5e-007 0.351351 0.000000 0.540541 0.108108 0.243243 0.162162 0.594595 0.000000 0.000000 0.000000 0.000000 1.000000 0.054054 0.054054 0.864865 0.027027 0.054054 0.108108 0.459459 0.378378 0.108108 0.243243 0.000000 0.648649 0.000000 0.108108 0.567568 0.324324 0.027027 0.081081 0.486486 0.405405 0.108108 0.378378 0.324324 0.189189 0.324324 0.000000 0.621622 0.054054 0.216216 0.000000 0.081081 0.702703 0.000000 0.432432 0.000000 0.567568 0.000000 0.000000 1.000000 0.000000 0.405405 0.000000 0.324324 0.270270 0.000000 0.270270 0.027027 0.702703 0.000000 0.135135 0.864865 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GA][GA]TG[GT][TC][GT][GT][CG][GA][TA][TC]G[AGT][TC]G -------------------------------------------------------------------------------- Time 86.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10366 1.34e-05 40_[+3(5.99e-07)]_54_[+1(7.17e-07)]_\ 87_[+3(7.78e-05)]_233_[+1(6.70e-06)]_12 10416 4.61e-04 4_[+1(3.43e-07)]_143_[+1(1.65e-08)]_\ 172_[+1(3.43e-07)]_118 10885 2.36e-01 312_[+1(6.21e-05)]_167 11572 7.23e-06 162_[+1(4.51e-05)]_114_\ [+2(5.09e-07)]_4_[+3(1.77e-05)]_163 11615 6.65e-03 214_[+2(2.09e-05)]_244_\ [+1(8.41e-05)]_1 11832 2.59e-05 17_[+3(3.13e-05)]_314_\ [+2(2.09e-05)]_111_[+1(2.63e-06)]_1 12189 4.36e-03 343_[+1(3.88e-06)]_136 1417 7.14e-01 500 1456 7.45e-02 236_[+2(2.09e-05)]_244 17695 5.43e-05 325_[+2(5.11e-05)]_89_\ [+1(3.90e-07)]_45 1788 7.42e-04 33_[+2(2.09e-05)]_160_\ [+1(3.20e-06)]_266 17961 2.75e-04 171_[+3(6.40e-05)]_7_[+3(4.62e-06)]_\ 184_[+2(2.82e-06)]_86 1820 6.61e-05 25_[+2(5.86e-05)]_415_\ [+1(3.90e-07)]_19 1909 2.59e-07 58_[+3(1.54e-07)]_19_[+2(1.05e-06)]_\ 36_[+3(2.68e-05)]_304_[+1(6.21e-05)]_10 19639 1.32e-04 88_[+1(3.01e-07)]_224_\ [+2(3.08e-05)]_117_[+1(1.94e-06)]_9 21941 2.70e-03 426_[+1(2.63e-06)]_53 2262 2.47e-04 45_[+3(4.22e-05)]_305_\ [+2(6.53e-07)]_114 22766 1.06e-03 272_[+3(1.36e-05)]_180_\ [+1(5.61e-06)]_11 22860 6.11e-04 165_[+3(4.62e-06)]_166_\ [+2(1.64e-05)]_133 23616 9.71e-06 90_[+1(1.66e-05)]_24_[+3(3.64e-05)]_\ 115_[+2(7.65e-05)]_33_[+2(5.65e-06)]_14_[+2(9.36e-07)]_127 23706 5.16e-06 38_[+3(2.23e-07)]_317_\ [+1(4.26e-06)]_108 24639 1.22e-07 92_[+3(2.68e-05)]_43_[+3(8.81e-05)]_\ 77_[+3(5.99e-07)]_155_[+1(4.42e-07)]_64 24862 1.63e-05 10_[+2(2.82e-06)]_201_\ [+1(3.90e-07)]_248 24932 1.43e-05 37_[+3(2.32e-06)]_406_\ [+1(2.02e-07)]_20 25085 4.26e-04 79_[+2(3.32e-05)]_60_[+3(3.38e-05)]_\ 294_[+1(3.94e-05)]_10 25116 1.67e-04 1_[+2(2.05e-06)]_287_[+2(4.66e-06)]_\ 36_[+3(1.25e-05)]_120 260789 2.78e-02 354_[+2(1.93e-05)]_126 262455 3.78e-09 71_[+2(2.66e-07)]_167_\ [+1(3.01e-07)]_73_[+3(1.22e-06)]_132 262506 6.38e-01 500 262743 4.50e-05 57_[+1(5.12e-06)]_163_\ [+2(6.82e-06)]_61_[+3(9.37e-05)]_162 262744 2.56e-03 122_[+2(3.08e-05)]_16_\ [+3(8.54e-06)]_326 263422 1.32e-07 79_[+1(3.43e-07)]_136_\ [+3(1.40e-06)]_48_[+2(9.80e-06)]_180 264007 1.21e-11 248_[+2(1.14e-07)]_30_\ [+3(2.05e-06)]_163_[+1(8.84e-10)]_2 26436 2.45e-03 408_[+1(1.79e-05)]_5_[+2(3.32e-05)]_\ 46 267987 1.52e-11 98_[+1(1.03e-05)]_190_\ [+3(2.05e-06)]_68_[+2(5.38e-11)]_55_[+1(2.38e-06)]_11 268157 3.48e-06 59_[+3(7.29e-05)]_31_[+2(8.19e-06)]_\ 221_[+1(3.01e-07)]_132 269320 1.18e-04 26_[+2(9.80e-06)]_91_[+2(7.16e-05)]_\ 76_[+2(9.26e-05)]_154_[+1(1.75e-06)]_72 28334 4.45e-04 16_[+3(7.74e-06)]_222_\ [+2(8.96e-06)]_226 29506 1.77e-05 56_[+3(1.25e-05)]_285_\ [+2(3.95e-07)]_123 30620 5.05e-03 331_[+1(8.92e-05)]_6_[+1(2.31e-07)]_\ 48_[+1(9.45e-05)]_52 31535 2.44e-07 332_[+3(5.22e-05)]_1_[+2(6.18e-08)]_\ 107_[+1(2.90e-06)]_3 3154 1.63e-03 190_[+3(8.54e-06)]_217_\ [+2(4.77e-05)]_57 33104 1.54e-02 106_[+2(1.27e-05)]_374 3354 2.82e-08 104_[+2(4.48e-08)]_5_[+3(3.43e-08)]_\ 355 3448 4.00e-03 15_[+3(5.60e-05)]_125_\ [+3(3.30e-06)]_328 34810 4.98e-06 80_[+2(1.05e-06)]_113_\ [+3(5.99e-07)]_271 35401 1.09e-04 174_[+3(1.49e-05)]_279_\ [+1(2.15e-06)]_10 38266 6.21e-08 315_[+2(1.32e-07)]_114_\ [+1(7.32e-06)]_8_[+1(8.54e-08)]_1 3874 1.17e-04 14_[+3(3.74e-07)]_265_\ [+1(2.99e-05)]_184 43120 8.70e-03 235_[+3(2.10e-05)]_200_\ [+1(6.21e-05)]_28 454 5.58e-07 80_[+1(1.31e-05)]_83_[+2(8.44e-08)]_\ 113_[+3(2.10e-05)]_167 5638 6.78e-07 35_[+3(1.36e-05)]_402_\ [+1(3.89e-08)]_26 5675 3.72e-02 49_[+3(8.54e-06)]_435 6472 1.31e-04 233_[+2(3.95e-07)]_115_\ [+1(2.08e-05)]_111 6979 1.01e-02 84_[+2(8.96e-06)]_166_\ [+2(2.09e-05)]_210 6980 5.59e-04 49_[+3(3.13e-05)]_297_\ [+1(7.93e-05)]_20_[+1(1.75e-06)]_76 7672 2.03e-05 5_[+2(4.48e-08)]_229_[+1(2.60e-05)]_\ 225 7940 7.59e-01 500 8524 6.78e-03 3_[+1(5.13e-05)]_180_[+1(6.70e-06)]_\ 275 9467 1.21e-11 249_[+2(1.14e-07)]_30_\ [+3(2.05e-06)]_163_[+1(8.84e-10)]_1 9880 2.33e-02 259_[+3(2.47e-05)]_225 bd1893 4.13e-01 500 bd463 3.01e-06 142_[+2(2.86e-05)]_251_\ [+3(1.36e-05)]_33_[+1(3.90e-07)]_17 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************