******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/361/361.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 10795 1.0000 500 14293 1.0000 500 17006 1.0000 500 21104 1.0000 500 21927 1.0000 500 22135 1.0000 500 22559 1.0000 500 22706 1.0000 500 23198 1.0000 500 24046 1.0000 500 24465 1.0000 500 24549 1.0000 500 25491 1.0000 500 25755 1.0000 500 262464 1.0000 500 262613 1.0000 500 263129 1.0000 500 264144 1.0000 500 269213 1.0000 500 269314 1.0000 500 30924 1.0000 500 3163 1.0000 500 36835 1.0000 500 6958 1.0000 500 8992 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/361/361.seqs.fa -oc motifs/361 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.273 C 0.246 G 0.228 T 0.253 Background letter frequencies (from dataset with add-one prior applied): A 0.273 C 0.246 G 0.228 T 0.253 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 21 sites = 17 llr = 229 E-value = 8.1e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 3345155:9511a215527:5 pos.-specific C 65549:2a:289:66156:a2 probability G 111::31::11:::2::11:2 matrix T :111:22:12:::215:12:: bits 2.1 1.9 * * * 1.7 * * * * 1.5 * ** ** * Relative 1.3 * ** *** * Entropy 1.1 * ** *** * (19.4 bits) 0.9 * * ** *** * ** 0.6 * ** ** ******* ** 0.4 ****** ** *********** 0.2 ********************* 0.0 --------------------- Multilevel CCCACAACAACCACCACCACA consensus AAAC G C A TAA C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 8992 218 1.82e-08 TCCGCAACCC ACCACACCAACCACAACCACG GGAACAAAGA 6958 121 2.05e-08 ATCATCGCTA CAAACGACATCCACCAATACA GCCGGATCTA 264144 128 2.05e-08 CCAACGACAA CCCTCTACATCCACCTACACC GACGAAGCCG 269314 352 2.94e-08 GACCACCACA CAACCAACAACCACTTCAACA ACAACAGGTG 269213 459 4.63e-08 TCGGCCCTGG CCCAAAACAAACACCAACACA CAAACCCTGA 22706 343 5.76e-08 CATTACACCT CCAACAACAACAACAACAACA ACAAACACGA 24046 411 7.14e-08 CCCTCCTTTC AACCCAACACCCAACACAACC AAACAAACAA 14293 475 8.79e-08 ACGTCACCAT CGCACATCATCCATCTACACA CCACA 24465 441 2.12e-07 ACTTCTCACT GCACCACCACCCAACTCCACG CACGATCCGG 17006 346 2.54e-07 CTCGTATCAT CTAACGTCAACCATCAATACA TCACACATCG 25755 375 5.07e-07 AACGAGAACG CCGCCTCCAACCAACAACGCA CCACGAAAAT 23198 426 5.07e-07 CAAACCCTCG CCACCAGCTCCCACCTCCTCC GCCGCTCTCT 10795 277 5.07e-07 GGAATCTGGG CCCTCAACAGCCACGTCAGCA ATGGACTTAA 36835 13 8.16e-07 GACACCACTT CTTCCGGCAACAACCTCCACG CGCATCAGTT 21927 73 1.57e-06 GATTTCTTTC ACTACTTCACCCACGAACTCG CCCCTCCATC 22135 391 2.51e-06 ACCATACACG AACACGACAAACAAGCACACC CAACATCGTT 21104 145 2.51e-06 TTGGGGTATT AACACGACAAGCATCTCGTCA GGCATTGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 8992 1.8e-08 217_[+1]_262 6958 2.1e-08 120_[+1]_359 264144 2.1e-08 127_[+1]_352 269314 2.9e-08 351_[+1]_128 269213 4.6e-08 458_[+1]_21 22706 5.8e-08 342_[+1]_137 24046 7.1e-08 410_[+1]_69 14293 8.8e-08 474_[+1]_5 24465 2.1e-07 440_[+1]_39 17006 2.5e-07 345_[+1]_134 25755 5.1e-07 374_[+1]_105 23198 5.1e-07 425_[+1]_54 10795 5.1e-07 276_[+1]_203 36835 8.2e-07 12_[+1]_467 21927 1.6e-06 72_[+1]_407 22135 2.5e-06 390_[+1]_89 21104 2.5e-06 144_[+1]_335 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=17 8992 ( 218) ACCACACCAACCACAACCACG 1 6958 ( 121) CAAACGACATCCACCAATACA 1 264144 ( 128) CCCTCTACATCCACCTACACC 1 269314 ( 352) CAACCAACAACCACTTCAACA 1 269213 ( 459) CCCAAAACAAACACCAACACA 1 22706 ( 343) CCAACAACAACAACAACAACA 1 24046 ( 411) AACCCAACACCCAACACAACC 1 14293 ( 475) CGCACATCATCCATCTACACA 1 24465 ( 441) GCACCACCACCCAACTCCACG 1 17006 ( 346) CTAACGTCAACCATCAATACA 1 25755 ( 375) CCGCCTCCAACCAACAACGCA 1 23198 ( 426) CCACCAGCTCCCACCTCCTCC 1 10795 ( 277) CCCTCAACAGCCACGTCAGCA 1 36835 ( 13) CTTCCGGCAACAACCTCCACG 1 21927 ( 73) ACTACTTCACCCACGAACTCG 1 22135 ( 391) AACACGACAAACAAGCACACC 1 21104 ( 145) AACACGACAAGCATCTCGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12000 bayes= 10.2568 E= 8.1e-010 11 140 -195 -1073 11 111 -195 -111 37 94 -195 -111 95 52 -1073 -111 -221 194 -1073 -1073 95 -1073 37 -52 95 -48 -95 -52 -1073 203 -1073 -1073 178 -1073 -1073 -210 95 -6 -195 -52 -121 175 -195 -1073 -121 184 -1073 -1073 187 -1073 -1073 -1073 -22 126 -1073 -52 -121 140 -37 -210 78 -206 -1073 89 78 111 -1073 -1073 -22 126 -195 -111 137 -1073 -95 -52 -1073 203 -1073 -1073 95 -6 5 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 17 E= 8.1e-010 0.294118 0.647059 0.058824 0.000000 0.294118 0.529412 0.058824 0.117647 0.352941 0.470588 0.058824 0.117647 0.529412 0.352941 0.000000 0.117647 0.058824 0.941176 0.000000 0.000000 0.529412 0.000000 0.294118 0.176471 0.529412 0.176471 0.117647 0.176471 0.000000 1.000000 0.000000 0.000000 0.941176 0.000000 0.000000 0.058824 0.529412 0.235294 0.058824 0.176471 0.117647 0.823529 0.058824 0.000000 0.117647 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.235294 0.588235 0.000000 0.176471 0.117647 0.647059 0.176471 0.058824 0.470588 0.058824 0.000000 0.470588 0.470588 0.529412 0.000000 0.000000 0.235294 0.588235 0.058824 0.117647 0.705882 0.000000 0.117647 0.176471 0.000000 1.000000 0.000000 0.000000 0.529412 0.235294 0.235294 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [CA][CA][CA][AC]C[AG]ACA[AC]CCA[CA]C[AT][CA][CA]AC[ACG] -------------------------------------------------------------------------------- Time 5.49 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 15 sites = 18 llr = 192 E-value = 1.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 2:2::1:1::21:2: pos.-specific C 69:813a535675:a probability G 21:221:21312::: matrix T 1:8:76:2622158: bits 2.1 1.9 * * 1.7 * * * 1.5 * * * * Relative 1.3 *** * ** Entropy 1.1 **** * *** (15.4 bits) 0.9 **** * *** 0.6 ****** ** **** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CCTCTTCCTCCCCTC consensus A GC GCGT T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 22559 402 1.95e-08 TCCCCTTCCT CCTCTTCCTTCCCTC TCTGCTGTAT 14293 271 1.95e-08 TGACTCTGTA CCTCTTCCCGCCTTC CGCACCCTTT 36835 150 5.83e-07 GTTCTTTCGT CCTCTCCGTGCGCTC GTCGTGCTGC 25491 415 8.62e-07 ATCTTCCCTG CCTCTTCTTCCTCTC GAAGCAACGT 22135 266 1.53e-06 AAGCCTCCCT GCTGTTCCCGCCCTC AGGCAGTACT 8992 441 1.71e-06 CGGCCTCTCT GCTCTGCCTGCCTTC CGACCAGTAT 24046 468 3.22e-06 AGCAACACCA ACTCTCCCTTACTTC AGTTACACAC 10795 470 3.89e-06 CCTTGCTCCC CCTCTACTTGTCTTC TCCGTAGAAG 21104 362 6.21e-06 ACGATGTCAT ACTCTTCCCTCACTC ACTCTTTCTC 22706 444 6.78e-06 ATGAATCACT CCACGTCGCGTCTTC TCGCAATATC 23198 458 9.53e-06 CCGCTCTCTT CCTCCTCCTCACTAC TCACCTCCGG 24465 421 1.22e-05 CCTCCCCCCC CCAGTTCCGCACTTC TCACTGCACC 262613 372 1.42e-05 TACTAATGTA ACTCTTCATCGCCTC CAGTCACCTT 21927 35 1.42e-05 AACACGCTCT CCTCGCCTCCTCCAC CGAGATGGCA 6958 479 1.66e-05 CAACGCTGCG CGTCTCCGTCCATTC AACCAAC 17006 455 1.66e-05 TCGAAAACAC CCTCGTCTGCTCCAC CTGGGATCGC 3163 385 1.92e-05 CGGCACGAGA GCACGCCGTCCGTTC TTTACGTCTC 25755 281 2.37e-05 CCGCAGATTC TCAGTTCCTCCGCTC GTGAATAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 22559 2e-08 401_[+2]_84 14293 2e-08 270_[+2]_215 36835 5.8e-07 149_[+2]_336 25491 8.6e-07 414_[+2]_71 22135 1.5e-06 265_[+2]_220 8992 1.7e-06 440_[+2]_45 24046 3.2e-06 467_[+2]_18 10795 3.9e-06 469_[+2]_16 21104 6.2e-06 361_[+2]_124 22706 6.8e-06 443_[+2]_42 23198 9.5e-06 457_[+2]_28 24465 1.2e-05 420_[+2]_65 262613 1.4e-05 371_[+2]_114 21927 1.4e-05 34_[+2]_451 6958 1.7e-05 478_[+2]_7 17006 1.7e-05 454_[+2]_31 3163 1.9e-05 384_[+2]_101 25755 2.4e-05 280_[+2]_205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=15 seqs=18 22559 ( 402) CCTCTTCCTTCCCTC 1 14293 ( 271) CCTCTTCCCGCCTTC 1 36835 ( 150) CCTCTCCGTGCGCTC 1 25491 ( 415) CCTCTTCTTCCTCTC 1 22135 ( 266) GCTGTTCCCGCCCTC 1 8992 ( 441) GCTCTGCCTGCCTTC 1 24046 ( 468) ACTCTCCCTTACTTC 1 10795 ( 470) CCTCTACTTGTCTTC 1 21104 ( 362) ACTCTTCCCTCACTC 1 22706 ( 444) CCACGTCGCGTCTTC 1 23198 ( 458) CCTCCTCCTCACTAC 1 24465 ( 421) CCAGTTCCGCACTTC 1 262613 ( 372) ACTCTTCATCGCCTC 1 21927 ( 35) CCTCGCCTCCTCCAC 1 6958 ( 479) CGTCTCCGTCCATTC 1 17006 ( 455) CCTCGTCTGCTCCAC 1 3163 ( 385) GCACGCCGTCCGTTC 1 25755 ( 281) TCAGTTCCTCCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 12150 bayes= 10.2456 E= 1.4e-001 -71 132 -45 -219 -1081 194 -203 -1081 -30 -1081 -1081 162 -1081 176 -45 -1081 -1081 -214 -4 151 -230 18 -203 127 -1081 203 -1081 -1081 -230 103 -4 -19 -1081 18 -103 127 -1081 103 55 -60 -71 118 -203 -19 -130 144 -45 -219 -1081 103 -1081 98 -71 -1081 -1081 172 -1081 203 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 18 E= 1.4e-001 0.166667 0.611111 0.166667 0.055556 0.000000 0.944444 0.055556 0.000000 0.222222 0.000000 0.000000 0.777778 0.000000 0.833333 0.166667 0.000000 0.000000 0.055556 0.222222 0.722222 0.055556 0.277778 0.055556 0.611111 0.000000 1.000000 0.000000 0.000000 0.055556 0.500000 0.222222 0.222222 0.000000 0.277778 0.111111 0.611111 0.000000 0.500000 0.333333 0.166667 0.166667 0.555556 0.055556 0.222222 0.111111 0.666667 0.166667 0.055556 0.000000 0.500000 0.000000 0.500000 0.166667 0.000000 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CC[TA]C[TG][TC]C[CGT][TC][CG][CT]C[CT]TC -------------------------------------------------------------------------------- Time 10.78 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 18 llr = 191 E-value = 2.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 8934479:78519a32 pos.-specific C ::332318:119::26 probability G 2::21::2:12:1:12 matrix T :14:2:1:3:2:::5: bits 2.1 1.9 * 1.7 * 1.5 *** Relative 1.3 * ** *** Entropy 1.1 ** ***** *** (15.3 bits) 0.9 ** ***** *** 0.6 ** ***** *** * 0.4 **** ***** *** * 0.2 **************** 0.0 ---------------- Multilevel AATAAAACAAACAATC consensus G CCCC GT T AG sequence AGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 24465 163 8.91e-09 AATGTTGCAG AATAAAACAAACAAAC ATGCAACAAC 24046 432 4.57e-08 CAACACAACC AAACAAACAAACAAAC ATCTCCAAAA 8992 279 6.85e-08 CTCTCTTCAG AACAACACTAACAATC TTTCGCTAGG 25491 381 5.48e-07 GAAAGTGCTC AACGAAAGAAGCAATC GAACGTCCAT 269314 35 1.45e-06 TCCGGCGTCC ATCCAAACAAACAACC ACCACAACCA 269213 10 2.22e-06 GAAGGATTT GATCCAACAGACAATC GTCACAGACG 14293 449 2.71e-06 CAATTGTATT AACATCACTATCAACC ACGTCACCAT 3163 327 4.36e-06 CGGCTAGAGC AAAACCAGTAACAAAC TCAATTGACC 21104 81 4.36e-06 AGAGACGAGA AATGAAACAATCAAGG TAGAGGACGG 22706 481 4.77e-06 ATTCATCATT AATCTCAGAATCAATG GTCA 262464 358 6.19e-06 ATCACTTCCT AACAAAACAACAAATG GAGGTGACTC 25755 432 6.75e-06 AAAGGCTTCC GACCAAAGAAGCAATA CCACCTCTTC 22135 105 1.58e-05 ATGATTTTAC ATTACAACTAACAACA AAGCGTTTCG 24549 252 2.37e-05 GCACTCAGTT GATGGACCAATCAATC ACCGTTCGTC 23198 50 2.52e-05 AGGCAACGGA AAAAGAACTAGAAATG GCAAAGGAGG 262613 478 2.86e-05 ACTCTGTAAA GAACTCTCAAACAAAC CGTGAAA 30924 2 3.23e-05 C AATACAACTCCCAATA GCCCAACCAC 263129 437 3.43e-05 GTAAGCGTGG AAAGTAACAGACGAAC GTGGAAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 24465 8.9e-09 162_[+3]_322 24046 4.6e-08 431_[+3]_53 8992 6.8e-08 278_[+3]_206 25491 5.5e-07 380_[+3]_104 269314 1.5e-06 34_[+3]_450 269213 2.2e-06 9_[+3]_475 14293 2.7e-06 448_[+3]_36 3163 4.4e-06 326_[+3]_158 21104 4.4e-06 80_[+3]_404 22706 4.8e-06 480_[+3]_4 262464 6.2e-06 357_[+3]_127 25755 6.8e-06 431_[+3]_53 22135 1.6e-05 104_[+3]_380 24549 2.4e-05 251_[+3]_233 23198 2.5e-05 49_[+3]_435 262613 2.9e-05 477_[+3]_7 30924 3.2e-05 1_[+3]_483 263129 3.4e-05 436_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=18 24465 ( 163) AATAAAACAAACAAAC 1 24046 ( 432) AAACAAACAAACAAAC 1 8992 ( 279) AACAACACTAACAATC 1 25491 ( 381) AACGAAAGAAGCAATC 1 269314 ( 35) ATCCAAACAAACAACC 1 269213 ( 10) GATCCAACAGACAATC 1 14293 ( 449) AACATCACTATCAACC 1 3163 ( 327) AAAACCAGTAACAAAC 1 21104 ( 81) AATGAAACAATCAAGG 1 22706 ( 481) AATCTCAGAATCAATG 1 262464 ( 358) AACAAAACAACAAATG 1 25755 ( 432) GACCAAAGAAGCAATA 1 22135 ( 105) ATTACAACTAACAACA 1 24549 ( 252) GATGGACCAATCAATC 1 23198 ( 50) AAAAGAACTAGAAATG 1 262613 ( 478) GAACTCTCAAACAAAC 1 30924 ( 2) AATACAACTCCCAATA 1 263129 ( 437) AAAGTAACAGACGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 9.52812 E= 2.1e+000 151 -1081 -4 -1081 170 -1081 -1081 -119 2 44 -1081 62 70 44 -4 -1081 70 -14 -103 -19 140 18 -1081 -1081 170 -214 -1081 -219 -1081 166 -4 -1081 129 -1081 -1081 40 161 -214 -103 -1081 87 -114 -45 -19 -130 186 -1081 -1081 179 -1081 -203 -1081 187 -1081 -1081 -1081 2 -56 -203 98 -71 132 -4 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 18 E= 2.1e+000 0.777778 0.000000 0.222222 0.000000 0.888889 0.000000 0.000000 0.111111 0.277778 0.333333 0.000000 0.388889 0.444444 0.333333 0.222222 0.000000 0.444444 0.222222 0.111111 0.222222 0.722222 0.277778 0.000000 0.000000 0.888889 0.055556 0.000000 0.055556 0.000000 0.777778 0.222222 0.000000 0.666667 0.000000 0.000000 0.333333 0.833333 0.055556 0.111111 0.000000 0.500000 0.111111 0.166667 0.222222 0.111111 0.888889 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 1.000000 0.000000 0.000000 0.000000 0.277778 0.166667 0.055556 0.500000 0.166667 0.611111 0.222222 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [AG]A[TCA][ACG][ACT][AC]A[CG][AT]A[AT]CAA[TA][CG] -------------------------------------------------------------------------------- Time 16.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 10795 4.01e-05 276_[+1(5.07e-07)]_172_\ [+2(3.89e-06)]_16 14293 2.26e-10 270_[+2(1.95e-08)]_163_\ [+3(2.71e-06)]_10_[+1(8.79e-08)]_5 17006 6.61e-05 345_[+1(2.54e-07)]_1_[+1(9.39e-05)]_\ 66_[+2(1.66e-05)]_31 21104 1.49e-06 80_[+3(4.36e-06)]_48_[+1(2.51e-06)]_\ 196_[+2(6.21e-06)]_124 21927 3.90e-04 34_[+2(1.42e-05)]_23_[+1(1.57e-06)]_\ 407 22135 1.34e-06 104_[+3(1.58e-05)]_145_\ [+2(1.53e-06)]_110_[+1(2.51e-06)]_89 22559 3.00e-04 401_[+2(1.95e-08)]_84 22706 5.71e-08 342_[+1(5.76e-08)]_80_\ [+2(6.78e-06)]_22_[+3(4.77e-06)]_4 23198 2.32e-06 49_[+3(2.52e-05)]_360_\ [+1(5.07e-07)]_11_[+2(9.53e-06)]_28 24046 2.10e-10 410_[+1(7.14e-08)]_[+3(4.57e-08)]_\ 20_[+2(3.22e-06)]_18 24465 9.93e-10 162_[+3(8.91e-09)]_242_\ [+2(1.22e-05)]_5_[+1(2.12e-07)]_39 24549 1.73e-02 251_[+3(2.37e-05)]_233 25491 8.91e-06 380_[+3(5.48e-07)]_18_\ [+2(8.62e-07)]_71 25755 1.74e-06 280_[+2(2.37e-05)]_79_\ [+1(5.07e-07)]_36_[+3(6.75e-06)]_53 262464 6.43e-03 357_[+3(6.19e-06)]_127 262613 4.24e-03 371_[+2(1.42e-05)]_91_\ [+3(2.86e-05)]_7 263129 1.74e-01 436_[+3(3.43e-05)]_48 264144 7.39e-05 127_[+1(2.05e-08)]_352 269213 2.23e-06 9_[+3(2.22e-06)]_433_[+1(4.63e-08)]_\ 21 269314 1.86e-06 38_[+1(3.32e-07)]_268_\ [+1(8.83e-05)]_3_[+1(2.94e-08)]_78_[+1(7.83e-06)]_29 30924 1.43e-01 1_[+3(3.23e-05)]_483 3163 4.72e-04 326_[+3(4.36e-06)]_42_\ [+2(1.92e-05)]_101 36835 1.01e-05 12_[+1(8.16e-07)]_116_\ [+2(5.83e-07)]_264_[+1(2.26e-05)]_51 6958 7.22e-06 96_[+1(1.57e-05)]_3_[+1(2.05e-08)]_\ 337_[+2(1.66e-05)]_7 8992 1.09e-10 217_[+1(1.82e-08)]_40_\ [+3(6.85e-08)]_146_[+2(1.71e-06)]_45 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************