******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= motifs/458/458.seqs.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 1023 1.0000 500 10270 1.0000 500 10560 1.0000 500 1075 1.0000 500 11182 1.0000 500 1611 1.0000 500 21052 1.0000 500 21131 1.0000 500 21647 1.0000 500 22243 1.0000 500 24090 1.0000 500 262537 1.0000 500 263655 1.0000 500 30977 1.0000 500 32098 1.0000 500 32843 1.0000 500 34104 1.0000 500 34739 1.0000 500 35745 1.0000 500 36204 1.0000 500 37970 1.0000 500 4065 1.0000 500 41025 1.0000 500 5322 1.0000 500 7507 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme motifs/458/458.seqs.fa -oc motifs/458 -dna -minw 12 -maxw 21 -nmotifs 3 -maxsize 500000 model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 12 maxw= 21 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 12500 N= 25 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.256 C 0.227 G 0.250 T 0.266 Background letter frequencies (from dataset with add-one prior applied): A 0.256 C 0.227 G 0.250 T 0.266 ******************************************************************************** ******************************************************************************** MOTIF 1 MEME width = 20 sites = 11 llr = 179 E-value = 4.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 1:::5:23::5::5::11:7 pos.-specific C ::::4::2:12:1:41:::: probability G 9:1a1:8:182:93:82481 matrix T :a9:1a:5912a:3617522 bits 2.1 1.9 * * * * 1.7 * * * * 1.5 **** * * ** Relative 1.3 **** ** * ** * Entropy 1.1 **** ** ** ** ** * (23.5 bits) 0.9 **** ** ** ** *** ** 0.6 **** ** ** ** ****** 0.4 ********** ********* 0.2 ******************** 0.0 -------------------- Multilevel GTTGATGTTGATGATGTTGA consensus C A GC G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- 22243 96 9.55e-11 TTTCCTTGAG GTTGATGCTGATGACGTTGA GACATCATCT 34739 240 3.47e-10 GACCGATGAC GTTGATGATGTTGTTGTTGA CAGGATGAAG 41025 34 6.63e-10 ACAGCAACTT GTTGTTGTTGATGTCGTTGA CTCAGAAATG 10270 18 3.42e-09 TACGCTGTTC GTTGCTGCTGCTGTTGTTGT TGTCATCGAG 7507 15 8.12e-09 CTTCACGCTT GTTGCTGTTGGTGGTGGGGT GGGTTGACAT 37970 116 1.06e-08 CTTCTTCTTC GTTGATGATGATGATGTGTG GTGAGGCTGA 32843 192 3.97e-08 GACCACGGCA GTTGATGATCTTGACGTGTA GGAGACCCCA 11182 45 6.47e-08 GTGGGACGCG GTTGATGTTGCTGATCAAGA GAGGTGAAGC 21131 101 7.92e-08 GACGACGGGT ATTGGTATTGGTGGTGTTGA TGGCAGAGTT 30977 119 8.45e-08 TCGTTGTGAC GTTGCTATTGATCGTTTGGA TGTAAGATTG 263655 172 2.59e-07 GTCGGAGGAT GTGGCTGTGTATGACGGTGA TGGAGACGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 22243 9.6e-11 95_[+1]_385 34739 3.5e-10 239_[+1]_241 41025 6.6e-10 33_[+1]_447 10270 3.4e-09 17_[+1]_463 7507 8.1e-09 14_[+1]_466 37970 1.1e-08 115_[+1]_365 32843 4e-08 191_[+1]_289 11182 6.5e-08 44_[+1]_436 21131 7.9e-08 100_[+1]_380 30977 8.4e-08 118_[+1]_362 263655 2.6e-07 171_[+1]_309 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=11 22243 ( 96) GTTGATGCTGATGACGTTGA 1 34739 ( 240) GTTGATGATGTTGTTGTTGA 1 41025 ( 34) GTTGTTGTTGATGTCGTTGA 1 10270 ( 18) GTTGCTGCTGCTGTTGTTGT 1 7507 ( 15) GTTGCTGTTGGTGGTGGGGT 1 37970 ( 116) GTTGATGATGATGATGTGTG 1 32843 ( 192) GTTGATGATCTTGACGTGTA 1 11182 ( 45) GTTGATGTTGCTGATCAAGA 1 21131 ( 101) ATTGGTATTGGTGGTGTTGA 1 30977 ( 119) GTTGCTATTGATCGTTTGGA 1 263655 ( 172) GTGGCTGTGTATGACGGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 12025 bayes= 10.4484 E= 4.1e-009 -149 -1010 186 -1010 -1010 -1010 -1010 191 -1010 -1010 -146 177 -1010 -1010 200 -1010 83 68 -146 -155 -1010 -1010 -1010 191 -50 -1010 171 -1010 9 -32 -1010 103 -1010 -1010 -146 177 -1010 -132 171 -155 83 -32 -46 -55 -1010 -1010 -1010 191 -1010 -132 186 -1010 83 -1010 12 3 -1010 68 -1010 126 -1010 -132 171 -155 -149 -1010 -46 145 -149 -1010 54 103 -1010 -1010 171 -55 150 -1010 -146 -55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 11 E= 4.1e-009 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.454545 0.363636 0.090909 0.090909 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.818182 0.000000 0.272727 0.181818 0.000000 0.545455 0.000000 0.000000 0.090909 0.909091 0.000000 0.090909 0.818182 0.090909 0.454545 0.181818 0.181818 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.090909 0.909091 0.000000 0.454545 0.000000 0.272727 0.272727 0.000000 0.363636 0.000000 0.636364 0.000000 0.090909 0.818182 0.090909 0.090909 0.000000 0.181818 0.727273 0.090909 0.000000 0.363636 0.545455 0.000000 0.000000 0.818182 0.181818 0.727273 0.000000 0.090909 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- GTTG[AC]TG[TA]TGATG[AGT][TC]GT[TG]GA -------------------------------------------------------------------------------- Time 5.41 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 MEME width = 21 sites = 22 llr = 259 E-value = 2.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 414::6541156347a11755 pos.-specific C 661593531923463:67154 probability G :2:21::21:::2:::2:::: matrix T ::53:1:17:3:::::111:: bits 2.1 1.9 1.7 * * 1.5 * * * Relative 1.3 * * * Entropy 1.1 * * * * * (17.0 bits) 0.9 * * * * *** **** 0.6 *** *** ** * *** **** 0.4 ******* **** ******** 0.2 ******* ************* 0.0 --------------------- Multilevel CCTCCAAATCAACCAACCAAA consensus A AT CCC TCAAC CC sequence G C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- 263655 465 4.41e-10 GGGTGGAAGC ACTGCAACTCAACCAACCAAA GAGCGCCCTA 32843 462 3.61e-08 AATTACTTTT CATCCAAAACAAGCAACCAAA CGACACACCA 37970 458 6.03e-08 GTCCATCATC CCTCCATGGCAACCAACCAAC CACCAATACG 21052 285 1.40e-07 TCTCAATCAC ACATCACCTCTACCAATCCCA ATCATATCAT 22243 447 1.97e-07 CCTAGATAGT AGACCAAATCACACAACCACG TCCGACGTCC 11182 416 1.97e-07 ATCATCACAT CCTCCTCACCTCGAAACCAAC ACCTATCAGG 34104 41 2.47e-07 CTCATCTCAC CCTCCTCGTCCACCAAGAACA TTCCCGTAAT 10560 476 2.47e-07 GCCTCCTCAC ACTTCCAATCAAAACAACACC AACC 1075 452 3.41e-07 TCAAATCACC ACACCCATTACCCAAACCACA ACGCATAGCA 7507 468 5.16e-07 CAAACCAAAG CGAGGCCATCACCCAACCAAC CCTCCCACAG 1611 404 8.46e-07 AAAAGAGCCA CCAACCAAGCAAGCAAGCACA AATGACAGTT 10270 324 1.35e-06 GAAATGGTGG ACACCCACTCCCAACTCCAAA GCCCCACCCA 41025 435 1.62e-06 CAGTATTCCA CCACCACTTCTCGACATCTCA TCAAAGCTTA 1023 389 2.11e-06 TTCGGACCTT CTTCCACATCCAGCCAGCCAC CGGCGTCTTC 34739 46 2.73e-06 GCGCTGGATT CATTCAAGTCTACCAACGTAC TTGCATAATT 21647 315 3.81e-06 GCACGCTTGA CGCTCAACGCTAACAACTAAA CATAATATTA 4065 460 6.11e-06 GAGTACTTGA CCCCCAAATCTGACAACTTCA ATGAGTCACC 262537 365 7.66e-06 GACATCCCTT TCATCAACTCTTCAAACAACA TTATCACATT 32098 469 1.03e-05 TCACTTCCTA CCTCCACTCACACACAGCCAC TTCGCATCAT 5322 191 1.56e-05 TGAAGCTTTC AAAGCCCGTCACTAAAACAAC ATTAATGGTA 21131 381 1.56e-05 TACTTTTGTC CCTTGTCCTAAAAACATCAAC GGAAATAACT 36204 177 1.90e-05 GATCTGCAGT AGTGCACGACAAACGACAACA GCTTACCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 263655 4.4e-10 464_[+2]_15 32843 3.6e-08 461_[+2]_18 37970 6e-08 457_[+2]_22 21052 1.4e-07 284_[+2]_195 22243 2e-07 446_[+2]_33 11182 2e-07 415_[+2]_64 34104 2.5e-07 40_[+2]_439 10560 2.5e-07 475_[+2]_4 1075 3.4e-07 451_[+2]_28 7507 5.2e-07 467_[+2]_12 1611 8.5e-07 403_[+2]_76 10270 1.4e-06 323_[+2]_156 41025 1.6e-06 434_[+2]_45 1023 2.1e-06 388_[+2]_91 34739 2.7e-06 45_[+2]_434 21647 3.8e-06 314_[+2]_165 4065 6.1e-06 459_[+2]_20 262537 7.7e-06 364_[+2]_115 32098 1e-05 468_[+2]_11 5322 1.6e-05 190_[+2]_289 21131 1.6e-05 380_[+2]_99 36204 1.9e-05 176_[+2]_303 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=22 263655 ( 465) ACTGCAACTCAACCAACCAAA 1 32843 ( 462) CATCCAAAACAAGCAACCAAA 1 37970 ( 458) CCTCCATGGCAACCAACCAAC 1 21052 ( 285) ACATCACCTCTACCAATCCCA 1 22243 ( 447) AGACCAAATCACACAACCACG 1 11182 ( 416) CCTCCTCACCTCGAAACCAAC 1 34104 ( 41) CCTCCTCGTCCACCAAGAACA 1 10560 ( 476) ACTTCCAATCAAAACAACACC 1 1075 ( 452) ACACCCATTACCCAAACCACA 1 7507 ( 468) CGAGGCCATCACCCAACCAAC 1 1611 ( 404) CCAACCAAGCAAGCAAGCACA 1 10270 ( 324) ACACCCACTCCCAACTCCAAA 1 41025 ( 435) CCACCACTTCTCGACATCTCA 1 1023 ( 389) CTTCCACATCCAGCCAGCCAC 1 34739 ( 46) CATTCAAGTCTACCAACGTAC 1 21647 ( 315) CGCTCAACGCTAACAACTAAA 1 4065 ( 460) CCCCCAAATCTGACAACTTCA 1 262537 ( 365) TCATCAACTCTTCAAACAACA 1 32098 ( 469) CCTCCACTCACACACAGCCAC 1 5322 ( 191) AAAGCCCGTCACTAAAACAAC 1 21131 ( 381) CCTTGTCCTAAAAACATCAAC 1 36204 ( 177) AGTGCACGACAAACGACAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 12000 bayes= 9.44434 E= 2.2e-008 50 138 -1110 -255 -91 149 -46 -255 67 -132 -1110 91 -249 114 -46 3 -1110 200 -146 -1110 120 27 -1110 -97 96 100 -1110 -255 50 27 -14 -97 -149 -132 -88 136 -91 193 -1110 -1110 83 0 -1110 26 120 49 -246 -255 31 85 -14 -255 67 138 -1110 -1110 141 27 -246 -1110 190 -1110 -1110 -255 -149 138 -46 -97 -91 168 -246 -155 150 -73 -1110 -97 109 100 -1110 -1110 109 85 -246 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 22 E= 2.2e-008 0.363636 0.590909 0.000000 0.045455 0.136364 0.636364 0.181818 0.045455 0.409091 0.090909 0.000000 0.500000 0.045455 0.500000 0.181818 0.272727 0.000000 0.909091 0.090909 0.000000 0.590909 0.272727 0.000000 0.136364 0.500000 0.454545 0.000000 0.045455 0.363636 0.272727 0.227273 0.136364 0.090909 0.090909 0.136364 0.681818 0.136364 0.863636 0.000000 0.000000 0.454545 0.227273 0.000000 0.318182 0.590909 0.318182 0.045455 0.045455 0.318182 0.409091 0.227273 0.045455 0.409091 0.590909 0.000000 0.000000 0.681818 0.272727 0.045455 0.000000 0.954545 0.000000 0.000000 0.045455 0.090909 0.590909 0.181818 0.136364 0.136364 0.727273 0.045455 0.090909 0.727273 0.136364 0.000000 0.136364 0.545455 0.454545 0.000000 0.000000 0.545455 0.409091 0.045455 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [CA]C[TA][CT]C[AC][AC][ACG]TC[ATC][AC][CAG][CA][AC]ACCA[AC][AC] -------------------------------------------------------------------------------- Time 10.28 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 MEME width = 16 sites = 16 llr = 184 E-value = 2.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :2:251841243:74: pos.-specific C 31113::::::::31: probability G 839518:697:8a13a matrix T :4:2112::16:::2: bits 2.1 1.9 * * 1.7 * * * * 1.5 * * * * Relative 1.3 * * * * ** * Entropy 1.1 * * **** ** * (16.6 bits) 0.9 * * ********* * 0.6 * * ********* * 0.4 * * ********** * 0.2 **************** 0.0 ---------------- Multilevel GTGGAGAGGGTGGAAG consensus CG C A AA CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- 34104 247 1.84e-08 GAAGCGGGAT GTGAAGAGGGTGGAGG TGGGGGTGAA 21131 51 2.78e-08 AGCTGCGGAG GTGGAGAAGGAGGCAG AGGAGGGTTG 262537 211 1.35e-07 GAGGGTAGAG GTGGAGAAGGTGGCCG TGACGGTGAC 24090 183 2.05e-07 CAATGTTGGA GCGGCGAAGGAGGAGG CAACCGTCAC 10270 145 4.36e-07 AGCTTTTCGT CGGGAGAGGTTGGAAG ATCGTGGCCA 34739 378 1.71e-06 CTGCCCGTTT CTGACGAAGAAGGAAG GTGGACATAA 4065 308 1.87e-06 GCTTTCTCTC CGGCGGAGGGAGGAAG ACGACATGCA 32098 80 2.24e-06 TTGCAAGTTT GAGCCGAGGGAAGATG AGGAGAACGG 1075 152 2.68e-06 GAGGAGTACT GTCGGGAGGGTGGCAG TGTAGGAGGG 37970 261 2.91e-06 CAAGCCAGCA GCGTCGAGGATGGACG TGGTGCCATG 1023 59 3.44e-06 TAGTGGTTGG GTGTTGTAGGTGGAAG ATTCCAATTC 5322 279 5.91e-06 GGATAATAGA GAGGATAAGATGGAGG TCGACGATTT 7507 48 6.83e-06 TTGACATAGA GAGACAAGGGAAGAGG TGTGCTTGTG 263655 311 7.85e-06 AGGAGGGAGA GGGGAGTGGTTGGGAG TAGCGTGGGA 30977 269 9.59e-06 AAGCGTTCGG CGGTAGTGGGAAGATG ACGTGGTTAT 35745 454 2.07e-05 CGACGAGGAC GTGGAAAGAGTAGCTG AATTTCATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 34104 1.8e-08 246_[+3]_238 21131 2.8e-08 50_[+3]_434 262537 1.4e-07 210_[+3]_274 24090 2.1e-07 182_[+3]_302 10270 4.4e-07 144_[+3]_340 34739 1.7e-06 377_[+3]_107 4065 1.9e-06 307_[+3]_177 32098 2.2e-06 79_[+3]_405 1075 2.7e-06 151_[+3]_333 37970 2.9e-06 260_[+3]_224 1023 3.4e-06 58_[+3]_426 5322 5.9e-06 278_[+3]_206 7507 6.8e-06 47_[+3]_437 263655 7.8e-06 310_[+3]_174 30977 9.6e-06 268_[+3]_216 35745 2.1e-05 453_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=16 seqs=16 34104 ( 247) GTGAAGAGGGTGGAGG 1 21131 ( 51) GTGGAGAAGGAGGCAG 1 262537 ( 211) GTGGAGAAGGTGGCCG 1 24090 ( 183) GCGGCGAAGGAGGAGG 1 10270 ( 145) CGGGAGAGGTTGGAAG 1 34739 ( 378) CTGACGAAGAAGGAAG 1 4065 ( 308) CGGCGGAGGGAGGAAG 1 32098 ( 80) GAGCCGAGGGAAGATG 1 1075 ( 152) GTCGGGAGGGTGGCAG 1 37970 ( 261) GCGTCGAGGATGGACG 1 1023 ( 59) GTGTTGTAGGTGGAAG 1 5322 ( 279) GAGGATAAGATGGAGG 1 7507 ( 48) GAGACAAGGGAAGAGG 1 263655 ( 311) GGGGAGTGGTTGGGAG 1 30977 ( 269) CGGTAGTGGGAAGATG 1 35745 ( 454) GTGGAAAGAGTAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 12125 bayes= 9.56379 E= 2.4e-003 -1064 14 158 -1064 -45 -86 0 72 -1064 -186 190 -1064 -45 -86 100 -51 96 46 -100 -209 -104 -1064 170 -209 166 -1064 -1064 -51 55 -1064 132 -1064 -203 -1064 190 -1064 -45 -1064 146 -109 77 -1064 -1064 108 -4 -1064 158 -1064 -1064 -1064 200 -1064 142 14 -200 -1064 77 -86 0 -51 -1064 -1064 200 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 16 E= 2.4e-003 0.000000 0.250000 0.750000 0.000000 0.187500 0.125000 0.250000 0.437500 0.000000 0.062500 0.937500 0.000000 0.187500 0.125000 0.500000 0.187500 0.500000 0.312500 0.125000 0.062500 0.125000 0.000000 0.812500 0.062500 0.812500 0.000000 0.000000 0.187500 0.375000 0.000000 0.625000 0.000000 0.062500 0.000000 0.937500 0.000000 0.187500 0.000000 0.687500 0.125000 0.437500 0.000000 0.000000 0.562500 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.687500 0.250000 0.062500 0.000000 0.437500 0.125000 0.250000 0.187500 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [GC][TG]GG[AC]GA[GA]GG[TA][GA]G[AC][AG]G -------------------------------------------------------------------------------- Time 14.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 1023 7.52e-05 58_[+3(3.44e-06)]_314_\ [+2(2.11e-06)]_91 10270 1.03e-10 17_[+1(3.42e-09)]_107_\ [+3(4.36e-07)]_163_[+2(1.35e-06)]_156 10560 4.72e-03 475_[+2(2.47e-07)]_4 1075 6.95e-06 151_[+3(2.68e-06)]_284_\ [+2(3.41e-07)]_28 11182 1.78e-07 44_[+1(6.47e-08)]_298_\ [+2(4.47e-06)]_32_[+2(1.97e-07)]_64 1611 2.50e-03 403_[+2(8.46e-07)]_76 21052 8.93e-04 284_[+2(1.40e-07)]_195 21131 1.43e-09 50_[+3(2.78e-08)]_2_[+3(1.66e-05)]_\ 16_[+1(7.92e-08)]_260_[+2(1.56e-05)]_99 21647 6.63e-03 94_[+2(9.45e-05)]_199_\ [+2(3.81e-06)]_165 22243 4.89e-10 95_[+1(9.55e-11)]_331_\ [+2(1.97e-07)]_33 24090 7.65e-04 182_[+3(2.05e-07)]_302 262537 7.23e-06 210_[+3(1.35e-07)]_138_\ [+2(7.66e-06)]_115 263655 4.81e-11 171_[+1(2.59e-07)]_119_\ [+3(7.85e-06)]_138_[+2(4.41e-10)]_15 30977 1.64e-05 118_[+1(8.45e-08)]_130_\ [+3(9.59e-06)]_216 32098 2.59e-04 79_[+3(2.24e-06)]_373_\ [+2(1.03e-05)]_11 32843 8.84e-09 191_[+1(3.97e-08)]_250_\ [+2(3.61e-08)]_18 34104 3.72e-08 13_[+2(8.99e-05)]_6_[+2(2.47e-07)]_\ 185_[+3(1.84e-08)]_238 34739 8.35e-11 45_[+2(2.73e-06)]_173_\ [+1(3.47e-10)]_118_[+3(1.71e-06)]_107 35745 4.71e-02 453_[+3(2.07e-05)]_31 36204 3.07e-02 176_[+2(1.90e-05)]_303 37970 9.52e-11 29_[+1(3.55e-05)]_66_[+1(1.06e-08)]_\ 125_[+3(2.91e-06)]_13_[+1(6.75e-05)]_148_[+2(6.03e-08)]_22 4065 2.75e-05 307_[+3(1.87e-06)]_136_\ [+2(6.11e-06)]_20 41025 6.26e-08 33_[+1(6.63e-10)]_381_\ [+2(1.62e-06)]_45 5322 2.99e-04 190_[+2(1.56e-05)]_67_\ [+3(5.91e-06)]_206 7507 1.21e-09 14_[+1(8.12e-09)]_13_[+3(6.83e-06)]_\ 404_[+2(5.16e-07)]_12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: seaotter.hsd1.wa.comcast.net ********************************************************************************