Module Functions 1 "Ribosomal protein S2:Ribosomal protein S2:Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L2:Ribosomal protein L2:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L14:Ribosomal protein L14:Ribosomal protein L5:Ribosomal protein L5:Ribosomal protein S8:Ribosomal protein S8:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein S9:Ribosomal protein S9:Enolase:Enolase:Ribosomal protein S19:Ribosomal protein S19:Ribosomal protein S17:Ribosomal protein S17:Ribosomal protein L24:Ribosomal protein L24:Ribosomal protein L15:Ribosomal protein L15:Preprotein translocase subunit SecY:Preprotein translocase subunit SecY:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Lactoylglutathione lyase and related lyases:Lactoylglutathione lyase and related lyases:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Predicted GTPase:Predicted GTPase:RNase P/RNase MRP subunit p29:RNase P/RNase MRP subunit p29:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein S6E (S10):Ribosomal protein S6E (S10):Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleotide binding:nucleic acid binding:DNA binding:RNA binding:structural constituent of ribosome:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:ribonuclease P activity:phosphopyruvate hydratase activity:GTP binding:glycolysis:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:tRNA processing:protein secretion:ferrous iron transmembrane transporter activity:P-P-bond-hydrolysis-driven protein transmembrane transporter activity:ferrous iron transport:rRNA binding:ribosome biogenesis:protein dimerization activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Pyruvate metabolism:Methane metabolism:Methane metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Ribosome:Ribosome:RNA degradation:RNA degradation:RNA polymerase:RNA polymerase:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:small_GTP:small_GTP:3a0501s007:3a0501s007:rpsC_E_A:rpsC_E_A:Sa_S2_E_A:Sa_S2_E_A:rpsD_arch:rpsD_arch:rpsS_arch:rpsS_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:L3_arch:L3_arch:arch_S9P:arch_S9P:arch_S11P:arch_S11P:arch_S13P:arch_S13P:arch_S17P:arch_S17P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:rpl14p_arch:rpl14p_arch:L21P_arch:L21P_arch:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism:Poorly characterized:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Protein synthesis:Folding Sorting and Degradation:Translation:Transcription:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Protein and peptide secretion and trafficking:General:Metabolism:Global:Signal Transduction:Membrane Transport:Environmental Information Processing:Folding Sorting and Degradation:Translation:Transcription:Genetic Information Processing:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Genetic Information Processing:Environmental Information Processing:Global:Ribosomal proteins: synthesis and modification:Unknown function:Protein fate:Protein synthesis:Protein fate:Ribosomal proteins: synthesis and modification:Protein and peptide secretion and trafficking:Unknown function:General:Information storage and processing:Cellular processes and signaling" 2 "Energy production and conversion:Energy production and conversion:Ribosomal protein S10:Ribosomal protein S10:Cell division GTPase:Cell division GTPase:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit:Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit:Translation elongation factors (GTPases):Translation elongation factors (GTPases):Predicted hydrolase of the metallo-beta-lactamase superfamily:Predicted hydrolase of the metallo-beta-lactamase superfamily:Periplasmic serine proteases (ClpP class):Periplasmic serine proteases (ClpP class):20S proteasome, alpha and beta subunits:20S proteasome, alpha and beta subunits:NADH:ubiquinone oxidoreductase 49 kD subunit 7:NADH:ubiquinone oxidoreductase 49 kD subunit 7:Transposase and inactivated derivatives:Transposase and inactivated derivatives:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:Rieske Fe-S protein:Rieske Fe-S protein:NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 3 (chain A):Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Prefoldin, chaperonin cofactor:Prefoldin, chaperonin cofactor:Archaeal/vacuolar-type H+-ATPase subunit D:Archaeal/vacuolar-type H+-ATPase subunit D:Archaeal flagellins:Archaeal flagellins:Na+/H+ antiporter:Na+/H+ antiporter:Succinate dehydrogenase/fumarate reductase, cytochrome b subunit:Succinate dehydrogenase/fumarate reductase, cytochrome b subunit:Site-specific recombinase XerD:Site-specific recombinase XerD:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:succinate dehydrogenase activity:DNA binding:structural constituent of ribosome:translation elongation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTPase activity:hydrogen-transporting two-sector ATPase activity:endopeptidase activity:threonine-type endopeptidase activity:proteasome endopeptidase activity:structural molecule activity:protein binding:ATP binding:GTP binding:tricarboxylic acid cycle:electron transport:mitochondrial electron transport, NADH to ubiquinone:DNA recombination:transcription, DNA-dependent:translation:translational elongation:protein folding:proteolysis:ubiquitin-dependent protein catabolic process:transport:sodium ion transport:regulation of pH:cellular component movement:NADH dehydrogenase (ubiquinone) activity:peptidase activity:protein-synthesizing GTPase activity:electron carrier activity:DNA integration:sodium:hydrogen antiporter activity:ATP synthesis coupled proton transport:iron-sulfur cluster assembly:oxidoreductase activity:hydrolase activity:ATPase activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:unfolded protein binding:protein polymerization:NAD binding:iron-sulfur cluster binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Butanoate metabolism:Butanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Proteasome:Proteasome:General function prediction only:General function prediction only:ftsZ:ftsZ:small_GTP:small_GTP:V_ATPase_subD:V_ATPase_subD:dhsB:dhsB:antiport_nhaC:antiport_nhaC:S10_Arc_S20_Euk:S10_Arc_S20_Euk:tspaseT_teng_C:tspaseT_teng_C:NuoI:NuoI:sufD:sufD:gimC_beta:gimC_beta:arch_flag_Nterm:arch_flag_Nterm:AhaH:AhaH:succ_dehyd_cytB:succ_dehyd_cytB:arc_protsome_A:arc_protsome_A:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Nucleotide Metabolism:Translation:Folding Sorting and Degradation:Metabolism:Metabolism:Genetic Information Processing:Global:Electron transport:TCA cycle:Ribosomal proteins: synthesis and modification:Degradation of proteins, peptides, and glycopeptides:Cations and iron carrying compounds:Cell division:Transposon functions:General:Other:Energy metabolism:Protein synthesis:Protein fate:Transport and binding proteins:Cellular processes:Mobile and extrachromosomal element functions:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Genetic Information Processing:Transcription:Translation:Folding Sorting and Degradation:Global:Metabolism:Energy metabolism:Electron transport:TCA cycle:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Degradation of proteins, peptides, and glycopeptides:Transport and binding proteins:Cations and iron carrying compounds:Cellular processes:Cell division:Mobile and extrachromosomal element functions:Transposon functions:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transcription" 3 "Energy production and conversion:Energy production and conversion:Ribosomal protein S10:Ribosomal protein S10:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Cell division GTPase:Cell division GTPase:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Glutamate dehydrogenase/leucine dehydrogenase:Glutamate dehydrogenase/leucine dehydrogenase:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):Ferredoxin:Ferredoxin:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Cold shock proteins:Cold shock proteins:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Archaeal flagellins:Archaeal flagellins:Predicted transcriptional regulators:Predicted transcriptional regulators:Na+/H+ antiporter:Na+/H+ antiporter:Uncharacterized conserved protein:Uncharacterized conserved protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:succinate dehydrogenase activity:DNA binding:sequence-specific DNA binding transcription factor activity:structural constituent of ribosome:translation elongation factor activity:catalytic activity:GTPase activity:glutamate dehydrogenase [NAD(P)+] activity:structural molecule activity:protein binding:ATP binding:GTP binding:electron transport:DNA recombination:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:protein folding:cellular amino acid metabolic process:transport:sodium ion transport:cellular iron ion homeostasis:regulation of pH:cellular component movement:response to stress:NADH dehydrogenase (ubiquinone) activity:metabolic process:ferric iron binding:zinc ion binding:protein-synthesizing GTPase activity:electron carrier activity:DNA integration:sodium:hydrogen antiporter activity:iron-sulfur cluster assembly:oxidoreductase activity:ATPase activity:thiamine pyrophosphate binding:2-oxoglutarate synthase activity:unfolded protein binding:protein polymerization:iron-sulfur cluster binding:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Butanoate metabolism:Butanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:Basal transcription factors:Basal transcription factors:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:Function unknown:Function unknown:ftsZ:ftsZ:small_GTP:small_GTP:TIGR00296:TIGR00296:antiport_nhaC:antiport_nhaC:S10_Arc_S20_Euk:S10_Arc_S20_Euk:NuoI:NuoI:sufD:sufD:thermosome_arch:thermosome_arch:arch_flag_Nterm:arch_flag_Nterm:OAFO_sf:OAFO_sf:Ribosomal proteins: synthesis and modification:Electron transport:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Transcription:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes:Transport and binding proteins:Protein fate:Protein synthesis:Energy metabolism:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:General:Energy Metabolism:Cell division:Amino Acid Metabolism:Cations and iron carrying compounds:Protein folding and stabilization:Genetic Information Processing:Transcription:Translation:Global:Metabolism:Energy metabolism:Electron transport:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein folding and stabilization:Transport and binding proteins:Cations and iron carrying compounds:Cellular processes:Cell division:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 4 "Energy production and conversion:Energy production and conversion:Phosphoribosylanthranilate isomerase:Phosphoribosylanthranilate isomerase:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):A/G-specific DNA glycosylase:A/G-specific DNA glycosylase:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Predicted transcriptional regulators:Predicted transcriptional regulators:Molybdopterin-guanine dinucleotide biosynthesis protein:Molybdopterin-guanine dinucleotide biosynthesis protein:Type IV secretory pathway, VirB4 components:Type IV secretory pathway, VirB4 components:Plastocyanin:Plastocyanin:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleotide binding:catalytic activity:phosphoribosylanthranilate isomerase activity:structural molecule activity:copper ion binding:ATP binding:GTP binding:electron transport:base-excision repair:protein folding:tryptophan metabolic process:Mo-molybdopterin cofactor biosynthetic process:electron carrier activity:ATPase activity:nucleoside-triphosphatase activity:gas vesicle organization:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Base excision repair:Base excision repair:mobB:mobB:thermosome_arch:thermosome_arch:TIGR02928:TIGR02928:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein folding and stabilization:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Amino Acid Metabolism:Protein fate:Biosynthesis of cofactors, prosthetic groups, and carriers:DNA metabolism:Molybdopterin:Protein folding and stabilization:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Amino Acid Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein fate" 5 "Energy production and conversion:Energy production and conversion:Phosphoribosylanthranilate isomerase:Phosphoribosylanthranilate isomerase:Predicted ATPase:Predicted ATPase:Acetyltransferases:Acetyltransferases:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):ATPase involved in DNA replication:ATPase involved in DNA replication:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Transposase and inactivated derivatives:Transposase and inactivated derivatives:MoxR-like ATPases:MoxR-like ATPases:Threonine dehydratase:Threonine dehydratase:A/G-specific DNA glycosylase:A/G-specific DNA glycosylase:Predicted transcriptional regulators:Predicted transcriptional regulators:Molybdopterin-guanine dinucleotide biosynthesis protein:Molybdopterin-guanine dinucleotide biosynthesis protein:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:High-affinity K+ transport system, ATPase chain B:High-affinity K+ transport system, ATPase chain B:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Type IV secretory pathway, VirB4 components:Type IV secretory pathway, VirB4 components:Plastocyanin:Plastocyanin:Amino acid transport and metabolism:Amino acid transport and metabolism:catalytic activity:phosphoribosylanthranilate isomerase activity:L-threonine ammonia-lyase activity:structural molecule activity:copper ion binding:ATP binding:GTP binding:electron transport:base-excision repair:protein folding:cellular amino acid metabolic process:tryptophan metabolic process:Mo-molybdopterin cofactor biosynthetic process:regulation of nitrogen utilization:potassium ion transport:N-acetyltransferase activity:metabolic process:cation transmembrane transporter activity:potassium-transporting ATPase activity:electron carrier activity:transcription repressor activity:ATPase activity:nucleoside-triphosphatase activity:pyridoxal phosphate binding:gas vesicle organization:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Two-component system:Two-component system:Base excision repair:Base excision repair:General function prediction only:General function prediction only:mobB:mobB:kdpA:kdpA:ilvA_1Cterm:ilvA_1Cterm:tspaseT_teng_C:tspaseT_teng_C:thermosome_arch:thermosome_arch:gas_vesic_GvpN:gas_vesic_GvpN:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism:Poorly characterized:Amino acid biosynthesis:Protein fate:Protein folding and stabilization:Transport and binding proteins:Cations and iron carrying compounds:Cellular processes:Other:Mobile and extrachromosomal element functions:Transposon functions:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transposon functions:Other:Cations and iron carrying compounds:Protein folding and stabilization:Global:Environmental Information Processing:Metabolism:Cellular processes and signaling:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Replication and Repair:Amino Acid Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Pyruvate family:Molybdopterin:Protein fate:Transport and binding proteins:Cellular processes:Mobile and extrachromosomal element functions:Environmental Information Processing:Signal Transduction:Global:Metabolism:Replication and Repair:Genetic Information Processing:Amino Acid Metabolism" 6 "ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:ABC-type sugar transport system, permease component:ABC-type sugar transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Phosphate uptake regulator:Phosphate uptake regulator:ABC-type dipeptide transport system, periplasmic component:ABC-type dipeptide transport system, periplasmic component:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type sugar transport systems, permease components:ABC-type sugar transport systems, permease components:Micrococcal nuclease (thermonuclease) homologs:Micrococcal nuclease (thermonuclease) homologs:ABC-type sugar transport system, periplasmic component:ABC-type sugar transport system, periplasmic component:Alkaline phosphatase:Alkaline phosphatase:ABC-type sugar transport systems, ATPase components:ABC-type sugar transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleic acid binding:alkaline phosphatase activity:nuclease activity:transporter activity:inorganic phosphate transmembrane transporter activity:binding:ATP binding:transport:phosphate ion transport:metabolic process:peptide transporter activity:phosphate ion transmembrane-transporting ATPase activity:peptide transport:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances:ATPase activity:ATPase activity, coupled to transmembrane movement of substances:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Aminobenzoate degradation:Aminobenzoate degradation:Folate biosynthesis:Folate biosynthesis:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:TAT_signal_seq:TAT_signal_seq:oligo_HPY:oligo_HPY:phoU_full:phoU_full:ptsS_2:ptsS_2:phosphate_pstC:phosphate_pstC:Amino acids, peptides and amines:Anions:Information storage and processing:Metabolism:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Signal Transduction:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Amino acids, peptides and amines:Metabolism:Information storage and processing:Global:Protein and peptide secretion and trafficking:Transport and binding proteins:Protein fate:Global:Metabolism:Signal Transduction:Membrane Transport:Environmental Information Processing:Anions:Protein fate:Protein and peptide secretion and trafficking:Transport and binding proteins" 7 "Energy production and conversion:Energy production and conversion:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Cell division GTPase:Cell division GTPase:Inorganic pyrophosphatase:Inorganic pyrophosphatase:Membrane protease subunits, stomatin/prohibitin homologs:Membrane protease subunits, stomatin/prohibitin homologs:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):Cystathionine beta-lyases/cystathionine gamma-synthases:Cystathionine beta-lyases/cystathionine gamma-synthases:Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis:Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:FOG: CheY-like receiver:FOG: CheY-like receiver:Chemotaxis signal transduction protein:Chemotaxis signal transduction protein:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Acyl-CoA synthetase (NDP forming):Acyl-CoA synthetase (NDP forming):Archaeal flagellins:Archaeal flagellins:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Putative archaeal flagellar protein D/E:Putative archaeal flagellar protein D/E:Putative archaeal flagellar protein C:Putative archaeal flagellar protein C:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:two-component response regulator activity:two-component signal transduction system (phosphorelay):magnesium ion binding:ciliary or flagellar motility:rhodopsin-like receptor activity:DNA binding:catalytic activity:GTPase activity:cystathionine gamma-synthase activity:branched-chain-amino-acid transaminase activity:glutaryl-CoA dehydrogenase activity:inorganic diphosphatase activity:signal transducer activity:structural molecule activity:protein binding:ATP binding:GTP binding:electron transport:DNA recombination:regulation of transcription, DNA-dependent:protein folding:cellular amino acid metabolic process:phosphate-containing compound metabolic process:transport:cellular component movement:chemotaxis:microtubule-based process:signal transduction:G-protein coupled receptor signaling pathway:metabolic process:branched chain family amino acid metabolic process:cobalamin biosynthetic process:DNA integration:iron-sulfur cluster assembly:ATPase activity:pyridoxal phosphate binding:thiamine pyrophosphate binding:cobyrinic acid a,c-diamide synthase activity:2-oxoglutarate synthase activity:flavin adenine dinucleotide binding:unfolded protein binding:protein polymerization:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Lysine degradation:Lysine degradation:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:Selenocompound metabolism:Selenocompound metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Bacterial chemotaxis:Bacterial chemotaxis:Signal transduction mechanisms:Signal transduction mechanisms:ftsZ:ftsZ:ilvE_I:ilvE_I:minD_arch:minD_arch:sufB:sufB:sufD:sufD:PorB_KorB:PorB_KorB:thermosome_arch:thermosome_arch:arch_flag_Nterm:arch_flag_Nterm:OAFO_sf:OAFO_sf:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein fate:Environmental Information Processing:Cellular Processes:Global:Protein folding and stabilization:Cell division:Pyruvate family:Other:Protein fate:Cellular processes:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell Motility:Signal Transduction:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Signal Transduction:Cellular Processes:Cell Motility:Global:Metabolism:Metabolism:Protein folding and stabilization:Cellular processes:Cell division:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Carbohydrate Metabolism:Metabolism" 8 "Energy production and conversion:Energy production and conversion:L-lactate permease:L-lactate permease:Predicted transcriptional regulators:Predicted transcriptional regulators:DNA binding:structural molecule activity:lactate transmembrane transporter activity:lactate transport:gas vesicle organization:Transcription:Transcription:Metabolism:Information storage and processing:Information storage and processing:Metabolism" 9 "Energy production and conversion:Energy production and conversion:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Amino acid transporters:Amino acid transporters:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Phytoene/squalene synthetase:Phytoene/squalene synthetase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:DNA-binding protein:DNA-binding protein:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Predicted membrane protein:Predicted membrane protein:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:Amino acid transport and metabolism:Amino acid transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:DNA binding:beta-carotene 15,15'-monooxygenase activity:acetate-CoA ligase activity:serine-type endopeptidase activity:ion channel activity:protein binding:ATP binding:electron transport:regulation of transcription, DNA-dependent:proteolysis:ion transport:potassium ion transport:amino acid transport:response to stress:N-acetyltransferase activity:metabolic process:cation transmembrane transporter activity:nitrate reductase activity:electron carrier activity:biosynthetic process:amino acid transmembrane transporter activity:cellular response to phosphate starvation:AMP binding:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Lipid transport and metabolism:Lipid transport and metabolism:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Pyruvate metabolism:Pyruvate metabolism:Propanoate metabolism:Propanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:Ac_CoA_lig_AcsA:Ac_CoA_lig_AcsA:blh_monoox:blh_monoox:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Regulatory functions:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Energy Metabolism:Small molecule interactions:Carbohydrate Metabolism:Cellular processes and signaling:Metabolism:Poorly characterized:Regulatory functions:Metabolism:Global:Metabolism of Terpenoids and Polyketides" 10 "Ribosomal protein S2:Ribosomal protein S2:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L2:Ribosomal protein L2:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L14:Ribosomal protein L14:Ribosomal protein L5:Ribosomal protein L5:Ribosomal protein S8:Ribosomal protein S8:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S5:Ribosomal protein S5:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein S9:Ribosomal protein S9:Enolase:Enolase:Ribosomal protein S15P/S13E:Ribosomal protein S15P/S13E:Ribosomal protein S19:Ribosomal protein S19:Ribosomal protein S17:Ribosomal protein S17:Ribosomal protein L24:Ribosomal protein L24:Ribosomal protein S14:Ribosomal protein S14:Ribosomal protein L15:Ribosomal protein L15:Preprotein translocase subunit SecY:Preprotein translocase subunit SecY:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Ribosomal protein L29:Ribosomal protein L29:Ribosomal protein L18:Ribosomal protein L18:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Translation initiation factor 2, alpha subunit (eIF-2alpha):Translation initiation factor 2, alpha subunit (eIF-2alpha):Ribosomal protein S4E:Ribosomal protein S4E:RNase P/RNase MRP subunit p29:RNase P/RNase MRP subunit p29:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L32E:Ribosomal protein L32E:Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein L30/L7E:Ribosomal protein L30/L7E:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein S6E (S10):Ribosomal protein S6E (S10):Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleotide binding:nucleic acid binding:DNA binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:ribonuclease P activity:phosphopyruvate hydratase activity:protein binding:glycolysis:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:tRNA processing:5S rRNA binding:protein secretion:P-P-bond-hydrolysis-driven protein transmembrane transporter activity:rRNA binding:ribosome biogenesis:sequence-specific DNA binding:protein dimerization activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Methane metabolism:Methane metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Ribosome:Ribosome:RNA degradation:RNA degradation:RNA polymerase:RNA polymerase:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:L29:L29:3a0501s007:3a0501s007:rpsC_E_A:rpsC_E_A:Sa_S2_E_A:Sa_S2_E_A:rpsD_arch:rpsD_arch:rpsE_arch:rpsE_arch:rpsS_arch:rpsS_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:L30P_arch:L30P_arch:L3_arch:L3_arch:arch_S9P:arch_S9P:arch_S11P:arch_S11P:arch_S13P:arch_S13P:arch_S17P:arch_S17P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:rpl14p_arch:rpl14p_arch:L21P_arch:L21P_arch:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Signal Transduction:Protein and peptide secretion and trafficking:Ribosomal proteins: synthesis and modification:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Genetic Information Processing:Transcription:Translation:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein and peptide secretion and trafficking:Information storage and processing:Cellular processes and signaling:Metabolism:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Protein synthesis:Membrane Transport:Folding Sorting and Degradation:Translation:Transcription:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Protein fate" 11 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Aspartate oxidase:Nicotinate-nucleotide pyrophosphorylase:Nicotinate-nucleotide pyrophosphorylase:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Quinolinate synthase:Quinolinate synthase:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:ABC-type Fe3+-siderophore transport system, permease component:ABC-type Fe3+-siderophore transport system, permease component:Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Phytoene dehydrogenase and related proteins:Phytoene dehydrogenase and related proteins:Phytoene/squalene synthetase:Phytoene/squalene synthetase:Predicted transcriptional regulators:Predicted transcriptional regulators:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:beta-carotene 15,15'-monooxygenase activity:monooxygenase activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:transporter activity:ion channel activity:ATP binding:electron transport:regulation of transcription, DNA-dependent:cellular aromatic compound metabolic process:transport:ion transport:N-acetyltransferase activity:metabolic process:L-aspartate oxidase activity:nitrate reductase activity:quinolinate synthetase A activity:electron carrier activity:biosynthetic process:thiamine biosynthetic process:NAD biosynthetic process:cellular response to phosphate starvation:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadC:nadC:sensory_box:sensory_box:nadA:nadA:crtI_fam:crtI_fam:CarR_dom_SF:CarR_dom_SF:blh_monoox:blh_monoox:Other:Pyridine nucleotides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Regulatory functions:Pyridine nucleotides:Other:Small molecule interactions:Global:Metabolism:Global:Membrane Transport:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Environmental Information Processing:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Regulatory functions:Small molecule interactions:Biosynthesis of cofactors, prosthetic groups, and carriers" 12 "Energy production and conversion:Energy production and conversion:Cell division GTPase:Cell division GTPase:Inorganic pyrophosphatase:Inorganic pyrophosphatase:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:20S proteasome, alpha and beta subunits:20S proteasome, alpha and beta subunits:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Cold shock proteins:Cold shock proteins:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:FOG: HEAT repeat:FOG: HEAT repeat:Archaeal flagellins:Archaeal flagellins:Predicted transcriptional regulators:Predicted transcriptional regulators:Na+/H+ antiporter:Na+/H+ antiporter:Sec-independent protein secretion pathway components:Sec-independent protein secretion pathway components:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:succinate dehydrogenase activity:magnesium ion binding:DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:GTPase activity:endopeptidase activity:threonine-type endopeptidase activity:proteasome endopeptidase activity:inorganic diphosphatase activity:structural molecule activity:binding:protein binding:ATP binding:GTP binding:electron transport:DNA recombination:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:protein folding:ubiquitin-dependent protein catabolic process:phosphate-containing compound metabolic process:transport:sodium ion transport:cellular iron ion homeostasis:regulation of pH:cellular component movement:response to stress:metabolic process:ferric iron binding:zinc ion binding:protein transporter activity:protein transport:DNA integration:sodium:hydrogen antiporter activity:iron-sulfur cluster assembly:oxidoreductase activity:ATPase activity:thiamine pyrophosphate binding:2-oxoglutarate synthase activity:unfolded protein binding:protein polymerization:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Butanoate metabolism:Butanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Basal transcription factors:Basal transcription factors:Proteasome:Proteasome:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:ftsZ:ftsZ:TIGR00296:TIGR00296:antiport_nhaC:antiport_nhaC:tatAE:tatAE:sufB:sufB:sufD:sufD:PorB_KorB:PorB_KorB:thermosome_arch:thermosome_arch:arch_flag_Nterm:arch_flag_Nterm:arc_protsome_B:arc_protsome_B:OAFO_sf:OAFO_sf:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Cellular processes:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Protein folding and stabilization:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Cations and iron carrying compounds:Cell division:General:Other:Protein fate:Transport and binding proteins:Cellular processes:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Folding Sorting and Degradation:Transcription:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Genetic Information Processing:Transcription:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Protein fate:Protein folding and stabilization:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Transport and binding proteins:Cations and iron carrying compounds:Metabolism:Cell division:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy Metabolism:Carbohydrate Metabolism:Membrane Transport" 13 "Energy production and conversion:Energy production and conversion:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Predicted permeases:Predicted permeases:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Predicted glycosyltransferases:Predicted glycosyltransferases:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:L-lactate permease:L-lactate permease:Predicted phosphate-binding enzymes, TIM-barrel fold:Predicted phosphate-binding enzymes, TIM-barrel fold:Predicted transporter component:Predicted transporter component:nucleotide binding:signal transducer activity:ATP binding:chemotaxis:response to stress:signal transduction:lactate transmembrane transporter activity:lactate transport:ATPase activity:nucleoside-triphosphatase activity:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:GGGP-family:GGGP-family:TIGR02928:TIGR02928:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:DNA replication, recombination, and repair:DNA metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair" 14 "Energy production and conversion:Energy production and conversion:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Uncharacterized conserved protein:Uncharacterized conserved protein:L-lactate permease:L-lactate permease:ATP binding:folic acid-containing compound biosynthetic process:lactate transmembrane transporter activity:lactate transport:ATPase activity:5-formyltetrahydrofolate cyclo-ligase activity:Function unknown:Function unknown:Defense mechanisms:Defense mechanisms:Cellular processes and signaling:Metabolism:Cellular processes and signaling:Poorly characterized:Metabolism:Poorly characterized" 15 "K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:High-affinity K+ transport system, ATPase chain B:High-affinity K+ transport system, ATPase chain B:nucleic acid binding:ATP binding:regulation of nitrogen utilization:potassium ion transport:metabolic process:cation transmembrane transporter activity:potassium-transporting ATPase activity:transcription repressor activity:hydrolase activity:manganese ion binding:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:General function prediction only:General function prediction only:kdpA:kdpA:Cations and iron carrying compounds:Metabolism:Poorly characterized:Transport and binding proteins:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Poorly characterized:Metabolism:Environmental Information Processing:Signal Transduction:Transport and binding proteins" 16 "Energy production and conversion:Energy production and conversion:Ribosomal protein S10:Ribosomal protein S10:Cell division GTPase:Cell division GTPase:Inorganic pyrophosphatase:Inorganic pyrophosphatase:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:Predicted hydrolase of the metallo-beta-lactamase superfamily:Predicted hydrolase of the metallo-beta-lactamase superfamily:Periplasmic serine proteases (ClpP class):Periplasmic serine proteases (ClpP class):NADH:ubiquinone oxidoreductase 49 kD subunit 7:NADH:ubiquinone oxidoreductase 49 kD subunit 7:Thioredoxin-like proteins and domains:Thioredoxin-like proteins and domains:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:Rieske Fe-S protein:Rieske Fe-S protein:NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NAD-dependent aldehyde dehydrogenases:NAD-dependent aldehyde dehydrogenases:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Cytochrome b subunit of the bc complex:Cytochrome b subunit of the bc complex:Prefoldin, chaperonin cofactor:Prefoldin, chaperonin cofactor:Archaeal/vacuolar-type H+-ATPase subunit D:Archaeal/vacuolar-type H+-ATPase subunit D:Archaeal flagellins:Archaeal flagellins:Predicted transcriptional regulators:Predicted transcriptional regulators:Na+/H+ antiporter:Na+/H+ antiporter:Putative archaeal flagellar protein D/E:Putative archaeal flagellar protein D/E:Site-specific recombinase XerD:Site-specific recombinase XerD:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:succinate dehydrogenase activity:magnesium ion binding:ciliary or flagellar motility:DNA binding:structural constituent of ribosome:translation elongation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTPase activity:hydrogen-transporting two-sector ATPase activity:aldehyde dehydrogenase (NAD) activity:inorganic diphosphatase activity:structural molecule activity:iron ion binding:protein binding:ATP binding:GTP binding:electron transport:mitochondrial electron transport, NADH to ubiquinone:DNA recombination:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:protein folding:proteolysis:phosphate-containing compound metabolic process:transport:sodium ion transport:regulation of pH:cellular component movement:NADH dehydrogenase (ubiquinone) activity:metabolic process:peptidase activity:protein-synthesizing GTPase activity:DNA integration:sodium:hydrogen antiporter activity:ATP synthesis coupled proton transport:iron-sulfur cluster assembly:oxidoreductase activity:hydrolase activity:ATPase activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:unfolded protein binding:protein polymerization:NAD binding:iron-sulfur cluster binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Pentose and glucuronate interconversions:Pentose and glucuronate interconversions:Ascorbate and aldarate metabolism:Ascorbate and aldarate metabolism:Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Lysine degradation:Lysine degradation:Arginine and proline metabolism:Arginine and proline metabolism:Histidine metabolism:Histidine metabolism:Tryptophan metabolism:Tryptophan metabolism:beta-Alanine metabolism:beta-Alanine metabolism:Glycerolipid metabolism:Glycerolipid metabolism:Pyruvate metabolism:Pyruvate metabolism:Chloroalkane and chloroalkene degradation:Chloroalkane and chloroalkene degradation:Propanoate metabolism:Propanoate metabolism:Butanoate metabolism:Butanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Limonene and pinene degradation:Limonene and pinene degradation:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:RNA polymerase:RNA polymerase:General function prediction only:General function prediction only:ftsZ:ftsZ:small_GTP:small_GTP:V_ATPase_subD:V_ATPase_subD:antiport_nhaC:antiport_nhaC:S10_Arc_S20_Euk:S10_Arc_S20_Euk:NuoI:NuoI:sufD:sufD:gimC_beta:gimC_beta:arch_flag_Nterm:arch_flag_Nterm:AhaH:AhaH:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Transcription:Translation:Metabolism:Metabolism:Genetic Information Processing:Global:Electron transport:Ribosomal proteins: synthesis and modification:Cations and iron carrying compounds:Cell division:General:Other:Energy metabolism:Protein synthesis:Transport and binding proteins:Cellular processes:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Transcription:Translation:Global:Metabolism:Energy metabolism:Electron transport:Protein synthesis:Ribosomal proteins: synthesis and modification:Transport and binding proteins:Cations and iron carrying compounds:Cellular processes:Cell division:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Lipid Metabolism" 17 "Predicted phosphoesterase:Predicted phosphoesterase:Permeases of the drug/metabolite transporter (DMT) superfamily:Permeases of the drug/metabolite transporter (DMT) superfamily:Predicted nuclease of the RecB family:Predicted nuclease of the RecB family:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Uncharacterized conserved protein:Uncharacterized conserved protein:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleic acid binding:DNA binding:regulation of transcription, DNA-dependent:DNA integration:hydrolase activity:regulation of cell cycle:Replication, recombination and repair:Replication, recombination and repair:General function prediction only:General function prediction only:Function unknown:Function unknown:yfcE:yfcE:Information storage and processing:Unknown function:Enzymes of unknown specificity:Poorly characterized:Metabolism:Cellular processes and signaling:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 18 "Cytosine deaminase and related metal-dependent hydrolases:Cytosine deaminase and related metal-dependent hydrolases:DNA repair exonuclease:DNA repair exonuclease:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleic acid binding:DNA binding:sequence-specific DNA binding transcription factor activity:carboxypeptidase activity:nuclease activity:exonuclease activity:aminoacyl-tRNA ligase activity:protein binding:ATP binding:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:tRNA aminoacylation for protein translation:potassium ion transport:zinc ion binding:potassium-transporting ATPase activity:DNA integration:hydrolase activity:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds:manganese ion binding:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:kdpA:kdpA:Information storage and processing:Metabolism:Metabolism:Information storage and processing:Transport and binding proteins:Cations and iron carrying compounds:Environmental Information Processing:Genetic Information Processing:Signal Transduction:Transcription:Poorly characterized:Poorly characterized:Genetic Information Processing:Transcription:Environmental Information Processing:Signal Transduction:Transport and binding proteins:Cations and iron carrying compounds" 19 "Energy production and conversion:Energy production and conversion:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Pyridoxine biosynthesis enzyme:Pyridoxine biosynthesis enzyme:NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:Thiamine biosynthesis protein ThiC:Thiamine biosynthesis protein ThiC:NADH:ubiquinone oxidoreductase 49 kD subunit 7:NADH:ubiquinone oxidoreductase 49 kD subunit 7:NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 1 (chain H):NADH:ubiquinone oxidoreductase subunit 1 (chain H):Acyl-CoA synthetase (NDP forming):Acyl-CoA synthetase (NDP forming):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit E:TATA-box binding protein (TBP), component of TFIID and TFIIIB:TATA-box binding protein (TBP), component of TFIID and TFIIIB:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:RNA polymerase II transcription factor activity:catalytic activity:hydrogen-transporting two-sector ATPase activity:branched-chain-amino-acid transaminase activity:electron transport:mitochondrial electron transport, NADH to ubiquinone:regulation of transcription, DNA-dependent:transcription initiation from RNA polymerase II promoter:NADH dehydrogenase (ubiquinone) activity:metabolic process:branched chain family amino acid metabolic process:thiamine biosynthetic process:ATP synthesis coupled proton transport:proton transport:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:NAD binding:iron-sulfur cluster binding:4 iron, 4 sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Oxidative phosphorylation:Oxidative phosphorylation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Methane metabolism:Methane metabolism:Thiamine metabolism:Thiamine metabolism:Vitamin B6 metabolism:Vitamin B6 metabolism:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Basal transcription factors:Basal transcription factors:thiC:thiC:ilvE_I:ilvE_I:nuoB_fam:nuoB_fam:NuoI:NuoI:AhaH:AhaH:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Electron transport:Global:Pyruvate family:Thiamine:Energy metabolism:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Genetic Information Processing:Metabolism:Metabolism:Transcription:Information storage and processing:Metabolism:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Transcription:Global:Metabolism:Energy metabolism:Electron transport:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Thiamine:Information storage and processing:Metabolism" 20 "Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Cobalamin-5-phosphate synthase:Cobalamin-5-phosphate synthase:4-hydroxybenzoate polyprenyltransferase and related prenyltransferases:4-hydroxybenzoate polyprenyltransferase and related prenyltransferases:Predicted hydrolase (HAD superfamily):Predicted hydrolase (HAD superfamily):Threonine dehydratase:Threonine dehydratase:Predicted phosphate-binding enzymes, TIM-barrel fold:Predicted phosphate-binding enzymes, TIM-barrel fold:GTP:adenosylcobinamide-phosphate guanylyltransferase:GTP:adenosylcobinamide-phosphate guanylyltransferase:Predicted membrane protein:Predicted membrane protein:Anaerobic glycerol-3-phosphate dehydrogenase:Anaerobic glycerol-3-phosphate dehydrogenase:Predicted membrane protein:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:glycerol-3-phosphate dehydrogenase activity:histidinol-phosphate transaminase activity:prenyltransferase activity:L-threonine ammonia-lyase activity:transporter activity:sugar:hydrogen symporter activity:electron transport:cellular amino acid metabolic process:transport:isoprenoid biosynthetic process:cobalamin 5'-phosphate synthase activity:phosphoglycolate phosphatase activity:cobalamin biosynthetic process:transferase activity, transferring nitrogenous groups:pyridoxal phosphate binding:threonine-phosphate decarboxylase activity:adenosylcobinamide-GDP ribazoletransferase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Histidine metabolism:Histidine metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:ilvA_1Cterm:ilvA_1Cterm:L_thr_O3P_dcar:L_thr_O3P_dcar:HAD-SF-IA-v1:HAD-SF-IA-v1:GGGP-family:GGGP-family:glycerol3P_GlpB:glycerol3P_GlpB:crt_membr_arch:crt_membr_arch:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Lipid Metabolism:Amino acid biosynthesis:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Energy metabolism:Heme, porphyrin, and cobalamin:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Amino Acid Metabolism:Pyruvate family:Enzymes of unknown specificity:Anaerobic:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Biosynthesis of Other Secondary Metabolites:Biosynthesis of Other Secondary Metabolites:Global:Metabolism:Energy metabolism:Anaerobic" 21 "Undecaprenyl pyrophosphate synthase:Undecaprenyl pyrophosphate synthase:Mn-dependent transcriptional regulator:Mn-dependent transcriptional regulator:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:sequence-specific DNA binding transcription factor activity:iron ion binding:regulation of transcription, DNA-dependent:potassium ion transport:metabolic process:potassium-transporting ATPase activity:di-trans,poly-cis-decaprenylcistransferase activity:transferase activity:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:kdpA:kdpA:Metabolism:Environmental Information Processing:Signal Transduction:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Metabolism:Environmental Information Processing:Signal Transduction:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing" 22 "structural molecule activity:gas vesicle organization" 23 "Energy production and conversion:Energy production and conversion:Ribosomal protein S12:Ribosomal protein S12:Ribosomal protein S10:Ribosomal protein S10:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L14:Ribosomal protein L14:Ribosomal protein L5:Ribosomal protein L5:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Nucleoside diphosphate kinase:Nucleoside diphosphate kinase:Ribosomal protein L24:Ribosomal protein L24:Ribosomal protein S14:Ribosomal protein S14:Ribosomal protein L15:Ribosomal protein L15:Preprotein translocase subunit SecY:Preprotein translocase subunit SecY:Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Catalase (peroxidase I):Catalase (peroxidase I):Acetyltransferases:Acetyltransferases:Translation elongation factors (GTPases):Translation elongation factors (GTPases):Predicted hydrolase of the metallo-beta-lactamase superfamily:Predicted hydrolase of the metallo-beta-lactamase superfamily:FKBP-type peptidyl-prolyl cis-trans isomerases 2:FKBP-type peptidyl-prolyl cis-trans isomerases 2:Aconitase A:Aconitase A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Archaeal/vacuolar-type H+-ATPase subunit C:Archaeal/vacuolar-type H+-ATPase subunit C:RNase P/RNase MRP subunit p29:RNase P/RNase MRP subunit p29:Ribosomal protein S28E/S33:Ribosomal protein S28E/S33:Ribosomal protein L21E:Ribosomal protein L21E:Ribosomal protein L19E:Ribosomal protein L19E:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleotide binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:translation elongation factor activity:peptidyl-prolyl cis-trans isomerase activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTPase activity:hydrogen-transporting two-sector ATPase activity:aconitate hydratase activity:catalase activity:ribonuclease P activity:nucleoside diphosphate kinase activity:cyclophilin:ATP binding:GTP binding:electron transport:GTP biosynthetic process:UTP biosynthetic process:CTP biosynthetic process:transcription, DNA-dependent:translation:translational initiation:translational elongation:N-terminal protein amino acid acetylation:response to oxidative stress:tRNA processing:protein-synthesizing GTPase activity:cellular amino acid biosynthetic process:ribosomal-protein-alanine N-acetyltransferase activity:protein secretion:P-P-bond-hydrolysis-driven protein transmembrane transporter activity:ATP synthesis coupled proton transport:proton transport:hydrolase activity:heme binding:FK506-sensitive peptidyl-prolyl cis-trans isomerase:cyclophilin-type peptidyl-prolyl cis-trans isomerase activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Tryptophan metabolism:Tryptophan metabolism:Glyoxylate and dicarboxylate metabolism:Glyoxylate and dicarboxylate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:eIF_5A:eIF_5A:cat_per_HPI:cat_per_HPI:small_GTP:small_GTP:3a0501s007:3a0501s007:S23_S12_E_A:S23_S12_E_A:rpsC_E_A:rpsC_E_A:L22_arch:L22_arch:ATP_syn_A_arch:ATP_syn_A_arch:S10_Arc_S20_Euk:S10_Arc_S20_Euk:rplX_A_E:rplX_A_E:acon_putative:acon_putative:rimI:rimI:AhaC:AhaC:L3_arch:L3_arch:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl14p_arch:rpl14p_arch:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Detoxification:General:Energy metabolism:Metabolism:Global:Energy metabolism:ATP-proton motive force interconversion:TCA cycle:Protein synthesis:Ribosomal proteins: synthesis and modification:Translation factors:Protein fate:Protein and peptide secretion and trafficking:Cellular processes:Detoxification:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein and peptide secretion and trafficking:Carbohydrate Metabolism:Translation factors:Ribosomal proteins: synthesis and modification:TCA cycle:ATP-proton motive force interconversion:Global:Protein synthesis:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Translation:Transcription:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Membrane Transport:Environmental Information Processing:Protein fate:Folding Sorting and Degradation:Cellular processes:Translation:Unknown function:Transcription:Genetic Information Processing:Amino Acid Metabolism:Information storage and processing:Cellular processes and signaling:Nucleotide Metabolism:Metabolism:Poorly characterized:Metabolism:Energy Metabolism" 24 "Energy production and conversion:Energy production and conversion:Arginyl-tRNA synthetase:Arginyl-tRNA synthetase:Ribosomal protein S10:Ribosomal protein S10:Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Catalase (peroxidase I):Catalase (peroxidase I):NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:S-adenosylhomocysteine hydrolase:S-adenosylhomocysteine hydrolase:NADH:ubiquinone oxidoreductase 49 kD subunit 7:NADH:ubiquinone oxidoreductase 49 kD subunit 7:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Rieske Fe-S protein:Rieske Fe-S protein:NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 1 (chain H):NADH:ubiquinone oxidoreductase subunit 1 (chain H):Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Acyl-CoA synthetase (NDP forming):Acyl-CoA synthetase (NDP forming):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit E:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Succinate dehydrogenase/fumarate reductase, cytochrome b subunit:Succinate dehydrogenase/fumarate reductase, cytochrome b subunit:TATA-box binding protein (TBP), component of TFIID and TFIIIB:TATA-box binding protein (TBP), component of TFIID and TFIIIB:Uncharacterized conserved protein:Uncharacterized conserved protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):succinate dehydrogenase activity:DNA binding:RNA polymerase II transcription factor activity:structural constituent of ribosome:translation initiation factor activity:translation elongation factor activity:catalytic activity:GTPase activity:hydrogen-transporting two-sector ATPase activity:adenosylhomocysteinase activity:catalase activity:glutaryl-CoA dehydrogenase activity:arginine-tRNA ligase activity:ATP binding:GTP binding:tricarboxylic acid cycle:electron transport:mitochondrial electron transport, NADH to ubiquinone:DNA recombination:regulation of transcription, DNA-dependent:transcription initiation from RNA polymerase II promoter:translation:translational initiation:translational elongation:arginyl-tRNA aminoacylation:one-carbon metabolic process:response to oxidative stress:NADH dehydrogenase (ubiquinone) activity:metabolic process:protein-synthesizing GTPase activity:DNA integration:ATP synthesis coupled proton transport:proton transport:oxidoreductase activity:heme binding:thiamine pyrophosphate binding:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:2-oxoglutarate synthase activity:flavin adenine dinucleotide binding:NAD binding:iron-sulfur cluster binding:4 iron, 4 sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Lysine degradation:Lysine degradation:Phenylalanine metabolism:Phenylalanine metabolism:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:Selenocompound metabolism:Selenocompound metabolism:Butanoate metabolism:Butanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:Basal transcription factors:Basal transcription factors:Function unknown:Function unknown:eIF_5A:eIF_5A:cat_per_HPI:cat_per_HPI:small_GTP:small_GTP:ahcY:ahcY:ATP_syn_A_arch:ATP_syn_A_arch:S10_Arc_S20_Euk:S10_Arc_S20_Euk:nuoB_fam:nuoB_fam:NuoI:NuoI:PorB_KorB:PorB_KorB:AhaH:AhaH:succ_dehyd_cytB:succ_dehyd_cytB:OAFO_sf:OAFO_sf:Electron transport:Genetic Information Processing:Global:Amino acids and amines:ATP-proton motive force interconversion:Electron transport:TCA cycle:Ribosomal proteins: synthesis and modification:Translation factors:Detoxification:General:Energy metabolism:Protein synthesis:Cellular processes:Unknown function:Translation:Transcription:Xenobiotics Biodegradation and Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Transcription:Translation:Global:Metabolism:Energy metabolism:Amino acids and amines:ATP-proton motive force interconversion:Metabolism:TCA cycle:Protein synthesis:Ribosomal proteins: synthesis and modification:Translation factors:Cellular processes:Detoxification:Unknown function:General:Information storage and processing:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism" 25 "Energy production and conversion:Energy production and conversion:Cell division GTPase:Cell division GTPase:Molybdenum cofactor biosynthesis enzyme:Molybdenum cofactor biosynthesis enzyme:Membrane protease subunits, stomatin/prohibitin homologs:Membrane protease subunits, stomatin/prohibitin homologs:Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase:Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase:Uncharacterized conserved protein:Uncharacterized conserved protein:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:Glutaredoxin and related proteins:Glutaredoxin and related proteins:Acyl-CoA synthetase (NDP forming):Acyl-CoA synthetase (NDP forming):Peroxiredoxin:Peroxiredoxin:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Flavoprotein involved in thiazole biosynthesis:Flavoprotein involved in thiazole biosynthesis:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Putative archaeal flagellar protein D/E:Putative archaeal flagellar protein D/E:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted transcriptional regulator with C-terminal CBS domains:Predicted transcriptional regulator with C-terminal CBS domains:Plastocyanin:Plastocyanin:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:magnesium ion binding:ciliary or flagellar motility:sequence-specific DNA binding transcription factor activity:catalytic activity:cytochrome-c oxidase activity:glutaryl-CoA dehydrogenase activity:inorganic diphosphatase activity:copper ion binding:protein binding:ATP binding:GTP binding:tricarboxylic acid cycle:electron transport:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:Mo-molybdopterin cofactor biosynthetic process:phosphate-containing compound metabolic process:response to stress:microtubule-based process:metabolic process:zinc ion binding:phosphoenolpyruvate carboxylase activity:phosphomethylpyrimidine kinase activity:electron carrier activity:thiamine biosynthetic process:aa3-type cytochrome c oxidase:ba3-type cytochrome c oxidase:caa3-type cytochrome c oxidase:cbb3-type cytochrome c oxidase:protein disulfide oxidoreductase activity:ATP synthesis coupled proton transport:antioxidant activity:oxidoreductase activity:DNA protection:cell redox homeostasis:metal ion binding:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:flavin adenine dinucleotide binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Lysine degradation:Lysine degradation:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:Pyruvate metabolism:Pyruvate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Thiamine metabolism:Thiamine metabolism:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Basal transcription factors:Basal transcription factors:Sulfur relay system:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:HMP-P_kinase:HMP-P_kinase:TIGR00292:TIGR00292:moaC:moaC:PEPCase_arch:PEPCase_arch:halo_cynanin:halo_cynanin:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Global:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Carbohydrate Metabolism:Lipid Metabolism:Energy metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Transcription:Folding Sorting and Degradation:Global:Metabolism:Energy metabolism:Other:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Thiamine:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Thiamine:Molybdopterin:Other:Biosynthesis of cofactors, prosthetic groups, and carriers:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Transcription:Xenobiotics Biodegradation and Metabolism" 26 "Energy production and conversion:Energy production and conversion:Predicted ATPase:Predicted ATPase:MoxR-like ATPases:MoxR-like ATPases:Threonine dehydratase:Threonine dehydratase:Predicted nuclease of the RecB family:Predicted nuclease of the RecB family:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Predicted aminopeptidases:Predicted aminopeptidases:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Plastocyanin:Plastocyanin:Amino acid transport and metabolism:Amino acid transport and metabolism:L-threonine ammonia-lyase activity:copper ion binding:ATP binding:electron transport:proteolysis:cellular amino acid metabolic process:potassium ion transport:peptidase activity:potassium-transporting ATPase activity:electron carrier activity:ATPase activity:pyridoxal phosphate binding:gas vesicle organization:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Two-component system:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:kdpA:kdpA:ilvA_1Cterm:ilvA_1Cterm:gas_vesic_GvpN:gas_vesic_GvpN:crt_membr_arch:crt_membr_arch:Cations and iron carrying compounds:Cellular processes:Other:Amino acid biosynthesis:Pyruvate family:Information storage and processing:Metabolism:Environmental Information Processing:Metabolism:Information storage and processing:Amino acid biosynthesis:Cellular processes:Transport and binding proteins:Pyruvate family:Other:Cations and iron carrying compounds:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Amino Acid Metabolism:Poorly characterized:Signal Transduction:Amino Acid Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Transport and binding proteins" 27 "Energy production and conversion:Energy production and conversion:Adenylosuccinate lyase:Adenylosuccinate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Anthranilate/para-aminobenzoate synthases component I:Anthranilate/para-aminobenzoate synthases component I:Shikimate 5-dehydrogenase:Shikimate 5-dehydrogenase:Aspartate/tyrosine/aromatic aminotransferase:Aspartate/tyrosine/aromatic aminotransferase:Glycosyltransferases involved in cell wall biogenesis:Glycosyltransferases involved in cell wall biogenesis:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:Predicted sugar phosphatases of the HAD superfamily:Predicted sugar phosphatases of the HAD superfamily:Orotate phosphoribosyltransferase homologs:Orotate phosphoribosyltransferase homologs:Flavodoxin reductases (ferredoxin-NADPH reductases) family 1:Flavodoxin reductases (ferredoxin-NADPH reductases) family 1:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Threonine dehydrogenase and related Zn-dependent dehydrogenases:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Archaeal flagella assembly protein J:Archaeal flagella assembly protein J:Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain:Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain:Signal transduction histidine kinase regulating citrate/malate metabolism:Signal transduction histidine kinase regulating citrate/malate metabolism:Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon:Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):catalytic activity:4-nitrophenylphosphatase activity:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity:amidophosphoribosyltransferase activity:anthranilate synthase activity:branched-chain-amino-acid transaminase activity:orotate phosphoribosyltransferase activity:phosphogluconate dehydrogenase (decarboxylating) activity:shikimate 3-dehydrogenase (NADP+) activity:ATP binding:pentose-phosphate shunt:electron transport:regulation of transcription, DNA-dependent:potassium ion transport:signal transduction:metabolic process:zinc ion binding:biosynthetic process:purine base biosynthetic process:nucleoside metabolic process:protein secretion:oxidoreductase activity:transferase activity, transferring nitrogenous groups:hydrolase activity:peptidyl-histidine phosphorylation:manganese ion binding:pyridoxal phosphate binding:cellular metabolic process:4-amino-4-deoxychorismate synthase activity:NADP binding:coenzyme binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Pentose phosphate pathway:Pentose phosphate pathway:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:aroE:aroE:HAD-SF-IIA:HAD-SF-IIA:PabB-clade2:PabB-clade2:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Unknown function:Regulatory functions:Aromatic amino acid family:Enzymes of unknown specificity:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Regulatory functions:Small molecule interactions:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aromatic amino acid family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Global:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism" 28 "Energy production and conversion:Energy production and conversion:Phosphoribosylanthranilate isomerase:Phosphoribosylanthranilate isomerase:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):ATPase involved in DNA replication:ATPase involved in DNA replication:Threonine synthase:Threonine synthase:Anthranilate phosphoribosyltransferase:Anthranilate phosphoribosyltransferase:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Predicted phosphoesterase:Predicted phosphoesterase:6-pyruvoyl-tetrahydropterin synthase:6-pyruvoyl-tetrahydropterin synthase:Threonine dehydratase:Threonine dehydratase:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Predicted transcriptional regulator:Predicted transcriptional regulator:Predicted transcriptional regulators:Predicted transcriptional regulators:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Predicted membrane protein:Predicted membrane protein:Predicted RNA-binding protein, contains TRAM domain:Predicted RNA-binding protein, contains TRAM domain:Plastocyanin:Plastocyanin:Amino acid transport and metabolism:Amino acid transport and metabolism:tryptophan biosynthetic process:nucleic acid binding:sequence-specific DNA binding transcription factor activity:6-pyruvoyltetrahydropterin synthase activity:anthranilate phosphoribosyltransferase activity:carboxypeptidase activity:phosphoribosylanthranilate isomerase activity:L-threonine ammonia-lyase activity:threonine synthase activity:aminoacyl-tRNA ligase activity:structural molecule activity:copper ion binding:ATP binding:electron transport:DNA modification:regulation of transcription, DNA-dependent:tRNA aminoacylation for protein translation:protein folding:cellular amino acid metabolic process:tryptophan metabolic process:potassium ion transport:response to stress:potassium-transporting ATPase activity:electron carrier activity:hydrolase activity:nucleoside-triphosphatase activity:pyridoxal phosphate binding:gas vesicle organization:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Vitamin B6 metabolism:Vitamin B6 metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:yfcE:yfcE:kdpA:kdpA:ilvA_1Cterm:ilvA_1Cterm:trpD:trpD:thermosome_arch:thermosome_arch:crt_membr_arch:crt_membr_arch:Enzymes of unknown specificity:Cations and iron carrying compounds:Protein folding and stabilization:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Pyruvate family:Amino acid biosynthesis:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Transport and binding proteins:Protein fate:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Signal Transduction:Global:Metabolism:Protein fate:Protein folding and stabilization:Transport and binding proteins:Cations and iron carrying compounds:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aromatic amino acid family:Pyruvate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Aromatic amino acid family" 29 "Energy production and conversion:Energy production and conversion:Arginyl-tRNA synthetase:Arginyl-tRNA synthetase:Ribosomal protein S10:Ribosomal protein S10:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Catalase (peroxidase I):Catalase (peroxidase I):NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):S-adenosylhomocysteine hydrolase:S-adenosylhomocysteine hydrolase:NADH:ubiquinone oxidoreductase 49 kD subunit 7:NADH:ubiquinone oxidoreductase 49 kD subunit 7:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Thioredoxin-like proteins and domains:Thioredoxin-like proteins and domains:NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 1 (chain H):NADH:ubiquinone oxidoreductase subunit 1 (chain H):NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Acyl-CoA synthetase (NDP forming):Acyl-CoA synthetase (NDP forming):Aconitase A:Aconitase A:Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):TATA-box binding protein (TBP), component of TFIID and TFIIIB:TATA-box binding protein (TBP), component of TFIID and TFIIIB:Site-specific recombinase XerD:Site-specific recombinase XerD:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):Amino acid transport and metabolism:Amino acid transport and metabolism:rhodopsin-like receptor activity:DNA binding:RNA polymerase II transcription factor activity:structural constituent of ribosome:translation elongation factor activity:catalytic activity:GTPase activity:aconitate hydratase activity:adenosylhomocysteinase activity:branched-chain-amino-acid transaminase activity:catalase activity:arginine-tRNA ligase activity:iron ion binding:ATP binding:GTP binding:electron transport:mitochondrial electron transport, NADH to ubiquinone:DNA recombination:regulation of transcription, DNA-dependent:transcription initiation from RNA polymerase II promoter:translation:translational elongation:arginyl-tRNA aminoacylation:protein folding:one-carbon metabolic process:response to oxidative stress:G-protein coupled receptor signaling pathway:NADH dehydrogenase (ubiquinone) activity:metabolic process:protein-synthesizing GTPase activity:cellular amino acid biosynthetic process:branched chain family amino acid metabolic process:DNA integration:iron-sulfur cluster assembly:heme binding:thiamine pyrophosphate binding:ATP synthesis coupled electron transport:2-oxoglutarate synthase activity:unfolded protein binding:NAD binding:iron-sulfur cluster binding:4 iron, 4 sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Phenylalanine metabolism:Phenylalanine metabolism:Tryptophan metabolism:Tryptophan metabolism:Selenocompound metabolism:Selenocompound metabolism:Glyoxylate and dicarboxylate metabolism:Glyoxylate and dicarboxylate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:Basal transcription factors:Basal transcription factors:cat_per_HPI:cat_per_HPI:small_GTP:small_GTP:ahcY:ahcY:S10_Arc_S20_Euk:S10_Arc_S20_Euk:ilvE_I:ilvE_I:acon_putative:acon_putative:nuoB_fam:nuoB_fam:NuoI:NuoI:NDH_I_L:NDH_I_L:PorB_KorB:PorB_KorB:thermosome_arch:thermosome_arch:OAFO_sf:OAFO_sf:TCA cycle:Global:Amino acids and amines:Electron transport:TCA cycle:Ribosomal proteins: synthesis and modification:Protein folding and stabilization:Detoxification:General:Pyruvate family:Energy metabolism:Protein synthesis:Protein fate:Cellular processes:Unknown function:Amino acid biosynthesis:Metabolism:Translation:Transcription:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Transcription:Translation:Global:Metabolism:Energy metabolism:Amino acids and amines:Electron transport:Genetic Information Processing:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein folding and stabilization:Cellular processes:Detoxification:Unknown function:General:Amino acid biosynthesis:Pyruvate family:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism" 30 "Phosphoribosylanthranilate isomerase:Phosphoribosylanthranilate isomerase:Phosphate/sulphate permeases:Phosphate/sulphate permeases:Cytosine deaminase and related metal-dependent hydrolases:Cytosine deaminase and related metal-dependent hydrolases:Anthranilate/para-aminobenzoate synthases component II:Anthranilate/para-aminobenzoate synthases component II:Anthranilate phosphoribosyltransferase:Anthranilate phosphoribosyltransferase:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Predicted nuclease of the RecB family:Predicted nuclease of the RecB family:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:tryptophan biosynthetic process:nucleic acid binding:DNA binding:anthranilate phosphoribosyltransferase activity:anthranilate synthase activity:carboxypeptidase activity:subtilase activity:phosphoribosylanthranilate isomerase activity:aminoacyl-tRNA ligase activity:hormone activity:inorganic phosphate transmembrane transporter activity:ATP binding:tRNA aminoacylation for protein translation:proteolysis:glutamine metabolic process:tryptophan metabolic process:phosphate ion transport:zinc ion binding:biosynthetic process:DNA integration:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds:ATPase activity:regulation of cell cycle:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:trpG_papA:trpG_papA:trpD:trpD:Defense mechanisms:Defense mechanisms:Aromatic amino acid family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Amino acid biosynthesis:Aromatic amino acid family:Global:Amino Acid Metabolism:Metabolism:Global:Metabolism:Metabolism:Amino Acid Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Amino acid biosynthesis" 31 "Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted ATPase:Predicted ATPase:Predicted phosphoesterase:Predicted phosphoesterase:Predicted nuclease of the RecB family:Predicted nuclease of the RecB family:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:nucleic acid binding:endonuclease activity:structural molecule activity:potassium ion transport:metabolic process:zinc ion binding:potassium-transporting ATPase activity:oxidoreductase activity, acting on the CH-CH group of donors:hydrolase activity:gas vesicle organization:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:yfcE:yfcE:kdpA:kdpA:F420_cofD:F420_cofD:crt_membr_arch:crt_membr_arch:Cations and iron carrying compounds:Transport and binding proteins:Unknown function:Information storage and processing:Metabolism:Poorly characterized:Environmental Information Processing:Signal Transduction:Transport and binding proteins:Enzymes of unknown specificity:Unknown function:Enzymes of unknown specificity:Information storage and processing:Metabolism:Poorly characterized:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction" 32 "Lipoate-protein ligase A:Lipoate-protein ligase A:Molybdopterin-guanine dinucleotide biosynthesis protein:Molybdopterin-guanine dinucleotide biosynthesis protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Uncharacterized conserved protein:Uncharacterized conserved protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:DNA binding:catalytic activity:GTP binding:regulation of transcription, DNA-dependent:protein modification process:Mo-molybdopterin cofactor biosynthetic process:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipoic acid metabolism:Lipoic acid metabolism:Metabolic pathways:Metabolic pathways:Function unknown:Function unknown:mobB:mobB:primase_Cterm:primase_Cterm:Metabolism:Mobile and extrachromosomal element functions:Prophage functions:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Molybdopterin:Prophage functions:Mobile and extrachromosomal element functions:Biosynthesis of cofactors, prosthetic groups, and carriers:Global:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Global" 33 "Energy production and conversion:Energy production and conversion:Succinyl-CoA synthetase, alpha subunit:Succinyl-CoA synthetase, alpha subunit:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Geranylgeranyl pyrophosphate synthase:Geranylgeranyl pyrophosphate synthase:Ribosomal protein S15P/S13E:Ribosomal protein S15P/S13E:Putative translation initiation inhibitor, yjgF family:Putative translation initiation inhibitor, yjgF family:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Predicted hydrolase of the metallo-beta-lactamase superfamily:Predicted hydrolase of the metallo-beta-lactamase superfamily:Translation initiation factor 2, alpha subunit (eIF-2alpha):Translation initiation factor 2, alpha subunit (eIF-2alpha):DNA-directed RNA polymerase, subunit E':DNA-directed RNA polymerase, subunit E':Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit F:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:Predicted prefoldin, molecular chaperone implicated in de novo protein folding:Predicted prefoldin, molecular chaperone implicated in de novo protein folding:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Electron transfer flavoprotein, alpha subunit:Electron transfer flavoprotein, alpha subunit:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:nucleotide binding:DNA binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:hydrogen-transporting two-sector ATPase activity:succinate-CoA ligase (ADP-forming) activity:ATP binding:electron transport:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:protein folding:metabolic process:isoprenoid biosynthetic process:electron carrier activity:ATP synthesis coupled proton transport:hydrolase activity:rRNA binding:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:flavin adenine dinucleotide binding:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Propanoate metabolism:Propanoate metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Ribosome:Ribosome:RNA polymerase:RNA polymerase:General function prediction only:General function prediction only:TIGR00004:TIGR00004:TIGR00293:TIGR00293:rpoE:rpoE:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:sucCoAalpha:sucCoAalpha:L22_arch:L22_arch:ATP_syn_A_arch:ATP_syn_A_arch:L13_A_E:L13_A_E:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:Protein synthesis:ATP-proton motive force interconversion:TCA cycle:Degradation of RNA:DNA-dependent RNA polymerase:Ribosomal proteins: synthesis and modification:Protein folding and stabilization:Energy metabolism:Transcription:Protein synthesis:Protein fate:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Translation:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Transcription:Translation:Environmental Information Processing:Signal Transduction:Global:Metabolism:Energy metabolism:ATP-proton motive force interconversion:TCA cycle:Transcription:Degradation of RNA:DNA-dependent RNA polymerase:Global:Ribosomal proteins: synthesis and modification:Protein fate:Protein folding and stabilization:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transcription:Metabolism of Terpenoids and Polyketides:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Environmental Information Processing" 34 "Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Uncharacterized conserved protein:Uncharacterized conserved protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:DNA binding:sequence-specific DNA binding transcription factor activity:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity:transposase activity:protein binding:transposition, DNA-mediated:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:metabolic process:zinc ion binding:oxidoreductase activity:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Basal transcription factors:Basal transcription factors:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Metabolism:Poorly characterized:Transcription:Genetic Information Processing:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Genetic Information Processing:Information storage and processing:Transcription:Cellular processes and signaling" 35 "FOG: Transposase and inactivated derivatives:FOG: Transposase and inactivated derivatives:Uncharacterized conserved protein:Uncharacterized conserved protein:DNA binding:transposase activity:transposition, DNA-mediated:Replication, recombination and repair:Replication, recombination and repair:Function unknown:Function unknown:Information storage and processing:Poorly characterized:Information storage and processing:Poorly characterized" 36 "Phosphate/sulphate permeases:Phosphate/sulphate permeases:Predicted membrane protein:Predicted membrane protein:sequence-specific DNA binding transcription factor activity:inorganic phosphate transmembrane transporter activity:protein binding:transcription, DNA-dependent:phosphate ion transport:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Function unknown:Function unknown:Metabolism:Metabolism:Poorly characterized:Poorly characterized" 37 "Transposase and inactivated derivatives:Transposase and inactivated derivatives:transposition, DNA-mediated:Replication, recombination and repair:Replication, recombination and repair:Information storage and processing:Information storage and processing" 38 "Predicted phosphoesterase:Predicted phosphoesterase:ABC-type cobalt transport system, ATPase component:ABC-type cobalt transport system, ATPase component:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Predicted nucleic acid-binding protein, contains PIN domain:Predicted nucleic acid-binding protein, contains PIN domain:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:nucleotide binding:DNA binding:nuclease activity:ATP binding:regulation of transcription, DNA-dependent:hydrolase activity:ATPase activity:nucleoside-triphosphatase activity:gas vesicle organization:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:ABC transporters:General function prediction only:General function prediction only:yfcE:yfcE:TIGR02928:TIGR02928:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Unknown function:DNA metabolism:Enzymes of unknown specificity:Metabolism:Cellular processes and signaling:DNA replication, recombination, and repair:Environmental Information Processing:Membrane Transport:Membrane Transport:Environmental Information Processing:Poorly characterized" 39 "Energy production and conversion:Energy production and conversion:Ribosomal protein S12:Ribosomal protein S12:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L5:Ribosomal protein L5:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein S9:Ribosomal protein S9:Enolase:Enolase:Ribosomal protein L24:Ribosomal protein L24:Ribosomal protein L15:Ribosomal protein L15:Preprotein translocase subunit SecY:Preprotein translocase subunit SecY:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Ribosomal protein L18:Ribosomal protein L18:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit C:Archaeal/vacuolar-type H+-ATPase subunit C:RNase P/RNase MRP subunit p29:RNase P/RNase MRP subunit p29:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleotide binding:DNA binding:RNA binding:structural constituent of ribosome:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:hydrogen-transporting two-sector ATPase activity:ribonuclease P activity:phosphopyruvate hydratase activity:ATP binding:glycolysis:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:tRNA processing:5S rRNA binding:protein secretion:P-P-bond-hydrolysis-driven protein transmembrane transporter activity:ATP synthesis coupled proton transport:rRNA binding:ribosome biogenesis:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:protein dimerization activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Methane metabolism:Methane metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Ribosome:Ribosome:RNA degradation:RNA degradation:RNA polymerase:RNA polymerase:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:3a0501s007:3a0501s007:S23_S12_E_A:S23_S12_E_A:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:L22_arch:L22_arch:ATP_syn_A_arch:ATP_syn_A_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:AhaC:AhaC:L3_arch:L3_arch:arch_S9P:arch_S9P:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:L21P_arch:L21P_arch:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein and peptide secretion and trafficking:Information storage and processing:Cellular processes and signaling:Metabolism:Folding Sorting and Degradation:Translation:Transcription:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Environmental Information Processing:Membrane Transport:Environmental Information Processing:Folding Sorting and Degradation:Translation:Transcription:Genetic Information Processing:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Membrane Transport:Signal Transduction:Metabolism:Metabolism:Protein fate:Protein synthesis:Energy metabolism:Protein and peptide secretion and trafficking:Ribosomal proteins: synthesis and modification:ATP-proton motive force interconversion:Global:Global:Metabolism:Signal Transduction:Genetic Information Processing:Energy metabolism:ATP-proton motive force interconversion:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate" 40 "Energy production and conversion:Energy production and conversion:Ribosomal protein S12:Ribosomal protein S12:Ribosomal protein S10:Ribosomal protein S10:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):IMP dehydrogenase/GMP reductase:IMP dehydrogenase/GMP reductase:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Heme/copper-type cytochrome/quinol oxidases, subunit 2:DNA-directed RNA polymerase, subunit H, RpoH/RPB5:DNA-directed RNA polymerase, subunit H, RpoH/RPB5:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):Nucleotide transport and metabolism:Nucleotide transport and metabolism:DNA binding:structural constituent of ribosome:translation initiation factor activity:translation elongation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTPase activity:IMP dehydrogenase activity:cytochrome-c oxidase activity:copper ion binding:GTP binding:electron transport:GMP biosynthetic process:transcription, DNA-dependent:translation:translational initiation:translational elongation:zinc ion binding:protein-synthesizing GTPase activity:aa3-type cytochrome c oxidase:ba3-type cytochrome c oxidase:caa3-type cytochrome c oxidase:cbb3-type cytochrome c oxidase:heme binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Ribosome:Ribosome:RNA polymerase:RNA polymerase:eIF_5A:eIF_5A:small_GTP:small_GTP:S23_S12_E_A:S23_S12_E_A:S10_Arc_S20_Euk:S10_Arc_S20_Euk:IMP_dehydrog:IMP_dehydrog:RNA_pol_rpoA1:RNA_pol_rpoA1:CoxB:CoxB:rpoB_arch:rpoB_arch:Energy metabolism:Translation:General:Global:Metabolism:Translation factors:Ribosomal proteins: synthesis and modification:Purine ribonucleotide biosynthesis:Electron transport:Global:Energy metabolism:Electron transport:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Protein synthesis:Ribosomal proteins: synthesis and modification:Translation factors:Unknown function:General:Information storage and processing:Metabolism:Genetic Information Processing:Metabolism:Metabolism:Translation:Transcription:Information storage and processing:Energy Metabolism:Nucleotide Metabolism:Metabolism:Metabolism:Energy Metabolism:Unknown function:Nucleotide Metabolism:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Genetic Information Processing:Transcription" 41 "Phosphate/sulphate permeases:Phosphate/sulphate permeases:Biotin-(acetyl-CoA carboxylase) ligase:Biotin-(acetyl-CoA carboxylase) ligase:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Predicted membrane protein:Predicted membrane protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:DNA binding:biotin-[acetyl-CoA-carboxylase] ligase activity:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity:inorganic phosphate transmembrane transporter activity:ATP binding:regulation of transcription, DNA-dependent:protein modification process:phosphate ion transport:metabolic process:ATP synthesis coupled proton transport:oxidoreductase activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Biotin metabolism:Biotin metabolism:Metabolic pathways:Metabolic pathways:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:birA_ligase:birA_ligase:arch_flag_Nterm:arch_flag_Nterm:Protein modification and repair:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Protein modification and repair:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Global:Metabolism:Cellular processes and signaling:Protein fate" 42 "Deoxyribose-phosphate aldolase:Deoxyribose-phosphate aldolase:ABC-type Fe3+-hydroxamate transport system, periplasmic component:ABC-type Fe3+-hydroxamate transport system, periplasmic component:Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit:Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Predicted transcriptional regulators:Predicted transcriptional regulators:Asparaginase:Asparaginase:Transcriptional regulators:Transcriptional regulators:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Erythromycin esterase homolog:Erythromycin esterase homolog:FOG: Transposase and inactivated derivatives:FOG: Transposase and inactivated derivatives:Type IV secretory pathway, VirB4 components:Type IV secretory pathway, VirB4 components:Predicted membrane protein:Predicted membrane protein:Uncharacterized protein contain chitin-binding domain type 3:Uncharacterized protein contain chitin-binding domain type 3:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleic acid binding:DNA binding:sequence-specific DNA binding transcription factor activity:asparaginase activity:deoxyribose-phosphate aldolase activity:carboxypeptidase activity:transposase activity:aminoacyl-tRNA ligase activity:structural molecule activity:iron ion transmembrane transporter activity:ATP binding:carbohydrate metabolic process:DNA modification:transposition, DNA-mediated:regulation of transcription, DNA-dependent:tRNA aminoacylation for protein translation:regulation of translational fidelity:glycoprotein catabolic process:high-affinity iron ion transport:beta-aspartyl-peptidase activity:endochitinase activity:deoxyribonucleotide catabolic process:ATPase activity:carbohydrate binding:gas vesicle organization:response to antibiotic:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Pentose phosphate pathway:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Cyanoamino acid metabolism:Cyanoamino acid metabolism:Nitrogen metabolism:Nitrogen metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:deoC:deoC:gatC:gatC:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Other:Amino Acid Metabolism:Metabolism of Other Amino Acids:Translation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Other:tRNA aminoacylation:Energy metabolism:Protein synthesis:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Translation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Energy Metabolism:Protein synthesis:tRNA aminoacylation:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 43 "Lipoate-protein ligase A:Lipoate-protein ligase A:Predicted pseudouridylate synthase:Predicted pseudouridylate synthase:Molybdopterin-guanine dinucleotide biosynthesis protein:Molybdopterin-guanine dinucleotide biosynthesis protein:Ketopantoate reductase:Ketopantoate reductase:catalytic activity:GTP binding:pyrimidine base metabolic process:protein folding:protein modification process:Mo-molybdopterin cofactor biosynthetic process:2-dehydropantoate 2-reductase activity:heat shock protein binding:NADP binding:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Lipoic acid metabolism:Lipoic acid metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:mobB:mobB:apbA_panE:apbA_panE:TIGR01213:TIGR01213:Metabolism:Information storage and processing:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Hypothetical proteins:Pantothenate and coenzyme A:Molybdopterin:Hypothetical proteins:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Pantothenate and coenzyme A:Information storage and processing:Metabolism:Conserved:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Conserved:Metabolism of Cofactors and Vitamins" 44 "Energy production and conversion:Energy production and conversion:Undecaprenyl pyrophosphate synthase:Undecaprenyl pyrophosphate synthase:Glycerol kinase:Glycerol kinase:Glycerol-3-phosphate dehydrogenase:Glycerol-3-phosphate dehydrogenase:Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:Diphthamide synthase subunit DPH2:Diphthamide synthase subunit DPH2:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Predicted RNA methylase:Predicted RNA methylase:Anaerobic glycerol-3-phosphate dehydrogenase:Anaerobic glycerol-3-phosphate dehydrogenase:Predicted membrane protein:Predicted membrane protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleic acid binding:DNA binding:glycerol-3-phosphate dehydrogenase activity:glycerol kinase activity:carbohydrate metabolic process:glycerol-3-phosphate metabolic process:electron transport:regulation of transcription, DNA-dependent:Mo-molybdopterin cofactor biosynthetic process:metabolic process:methyltransferase activity:di-trans,poly-cis-decaprenylcistransferase activity:methylation:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycerolipid metabolism:Glycerolipid metabolism:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:uppS:uppS:molyb_syn:molyb_syn:diphth2_R:diphth2_R:glycerol_kin:glycerol_kin:glycerol3P_GlpA:glycerol3P_GlpA:glycerol3P_GlpB:glycerol3P_GlpB:Anaerobic:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Energy metabolism:Cell envelope:Global:Metabolism:Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Energy metabolism:Anaerobic:Other:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Terpenoids and Polyketides:Lipid Metabolism:Other" 45 "Energy production and conversion:Energy production and conversion:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Ribosomal protein S12:Ribosomal protein S12:Succinyl-CoA synthetase, alpha subunit:Succinyl-CoA synthetase, alpha subunit:Putative translation initiation inhibitor, yjgF family:Putative translation initiation inhibitor, yjgF family:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Predicted UDP-glucose 6-dehydrogenase:Predicted UDP-glucose 6-dehydrogenase:NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:Precorrin-3B methylase:Precorrin-3B methylase:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit B:Archaeal/vacuolar-type H+-ATPase subunit B:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit C:Archaeal/vacuolar-type H+-ATPase subunit C:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Electron transfer flavoprotein, alpha subunit:Electron transfer flavoprotein, alpha subunit:Cobalamin biosynthesis protein CbiG:Cobalamin biosynthesis protein CbiG:Electron transfer flavoprotein, beta subunit:Electron transfer flavoprotein, beta subunit:Precorrin-6B methylase 2:Precorrin-6B methylase 2:Precorrin-2 methylase:Precorrin-2 methylase:Precorrin-4 methylase:Precorrin-4 methylase:DNA binding:structural constituent of ribosome:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:hydrogen-transporting two-sector ATPase activity:UDP-glucose 6-dehydrogenase activity:dihydrolipoyl dehydrogenase activity:pyruvate dehydrogenase (acetyl-transferring) activity:dihydrolipoyllysine-residue acetyltransferase activity:succinate-CoA ligase (ADP-forming) activity:transposase activity:protein binding:ATP binding:sugar binding:electron transport:mitochondrial electron transport, NADH to ubiquinone:transposition, DNA-mediated:transcription, DNA-dependent:translation:NADH dehydrogenase (ubiquinone) activity:metabolic process:protein methyltransferase activity:electron carrier activity:cobalamin biosynthetic process:ATP synthesis coupled proton transport:proton transport:precorrin-2 C20-methyltransferase activity:precorrin-3B C17-methyltransferase activity:ATP synthesis coupled electron transport:cell redox homeostasis:precorrin-6Y C5,15-methyltransferase (decarboxylating) activity:precorrin-4 C11-methyltransferase activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:flavin adenine dinucleotide binding:NAD binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Pentose and glucuronate interconversions:Pentose and glucuronate interconversions:Ascorbate and aldarate metabolism:Ascorbate and aldarate metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Starch and sucrose metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Pyruvate metabolism:Pyruvate metabolism:Propanoate metabolism:Propanoate metabolism:Butanoate metabolism:Butanoate metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:RNA polymerase:RNA polymerase:TIGR00004:TIGR00004:S23_S12_E_A:S23_S12_E_A:sucCoAalpha:sucCoAalpha:ATP_syn_B_arch:ATP_syn_B_arch:ATP_syn_A_arch:ATP_syn_A_arch:lipoamide_DH:lipoamide_DH:cobJ_cbiH:cobJ_cbiH:NuoI:NuoI:NDH_I_L:NDH_I_L:RNA_pol_rpoA2:RNA_pol_rpoA2:CbiT:CbiT:AhaC:AhaC:AhaH:AhaH:NDP-sugDHase:NDP-sugDHase:PDH_E1_alph_x:PDH_E1_alph_x:Global:Translation:Transcription:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Carbohydrate Metabolism:Energy metabolism:ATP-proton motive force interconversion:Electron transport:Pyruvate dehydrogenase:TCA cycle:Transcription:Degradation of RNA:DNA-dependent RNA polymerase:Protein synthesis:Ribosomal proteins: synthesis and modification:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:Transcription:Energy metabolism:Heme, porphyrin, and cobalamin:Ribosomal proteins: synthesis and modification:DNA-dependent RNA polymerase:Degradation of RNA:TCA cycle:Pyruvate dehydrogenase:Electron transport:ATP-proton motive force interconversion:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Transcription:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Metabolism" 46 "5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:Predicted transcriptional regulators:Predicted transcriptional regulators:Chitinase:Chitinase:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:sequence-specific DNA binding transcription factor activity:chitin catabolic process:regulation of transcription, DNA-dependent:zinc ion binding:endochitinase activity:nucleotide catabolic process:hydrolase activity:carbohydrate binding:cation binding:Transcription:Transcription:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Metabolism:Carbohydrate Metabolism:Metabolism:Information storage and processing:Metabolism:Carbohydrate Metabolism:Metabolism:Information storage and processing" 47 "Restriction endonuclease:Restriction endonuclease:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Predicted transporter component:Predicted transporter component:DNA binding:endonuclease activity:polygalacturonase activity:carbohydrate metabolic process:potassium ion transport:zinc ion binding:potassium-transporting ATPase activity:DNA restriction-modification system:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:General function prediction only:General function prediction only:kdpA:kdpA:Defense mechanisms:Defense mechanisms:Environmental Information Processing:Poorly characterized:Transport and binding proteins:Cations and iron carrying compounds:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Transport and binding proteins:Metabolism:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Signal Transduction" 48 "Phosphoribosylanthranilate isomerase:Phosphoribosylanthranilate isomerase:Anthranilate/para-aminobenzoate synthases component I:Anthranilate/para-aminobenzoate synthases component I:Trk-type K+ transport systems, membrane components:Trk-type K+ transport systems, membrane components:Anthranilate/para-aminobenzoate synthases component II:Anthranilate/para-aminobenzoate synthases component II:Anthranilate phosphoribosyltransferase:Anthranilate phosphoribosyltransferase:ABC-type cobalt transport system, ATPase component:ABC-type cobalt transport system, ATPase component:Uncharacterized conserved protein:Uncharacterized conserved protein:NMD protein affecting ribosome stability and mRNA decay:NMD protein affecting ribosome stability and mRNA decay:Predicted methyltransferase:Predicted methyltransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:tryptophan biosynthetic process:structural constituent of ribosome:anthranilate phosphoribosyltransferase activity:anthranilate synthase activity:serine-type carboxypeptidase activity:phosphoribosylanthranilate isomerase activity:ATP binding:translation:proteolysis:glutamine metabolic process:tryptophan metabolic process:cation transport:cation transmembrane transporter activity:biosynthetic process:ATPase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:General function prediction only:General function prediction only:trpG_papA:trpG_papA:trpD:trpD:TrpE-arch:TrpE-arch:Global:Membrane Transport:Environmental Information Processing:Amino acid biosynthesis:Aromatic amino acid family:Information storage and processing:Metabolism:Poorly characterized:Amino Acid Metabolism:Environmental Information Processing:Metabolism:Metabolism:Poorly characterized:Metabolism:Membrane Transport:Amino Acid Metabolism:Amino acid biosynthesis:Metabolism:Information storage and processing:Global:Aromatic amino acid family:Metabolism" 49 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Cell division GTPase:Cell division GTPase:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):S-adenosylhomocysteine hydrolase:S-adenosylhomocysteine hydrolase:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:20S proteasome, alpha and beta subunits:20S proteasome, alpha and beta subunits:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Thioredoxin-like proteins and domains:Thioredoxin-like proteins and domains:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):Acyl-CoA synthetase (NDP forming):Acyl-CoA synthetase (NDP forming):Cold shock proteins:Cold shock proteins:Archaeal flagellins:Archaeal flagellins:Predicted transcriptional regulators:Predicted transcriptional regulators:Sec-independent protein secretion pathway components:Sec-independent protein secretion pathway components:Uncharacterized conserved protein:Uncharacterized conserved protein:DNA-binding protein:DNA-binding protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:catalytic activity:GTPase activity:adenosylhomocysteinase activity:branched-chain-amino-acid transaminase activity:endopeptidase activity:threonine-type endopeptidase activity:proteasome endopeptidase activity:structural molecule activity:iron ion binding:ATP binding:GTP binding:electron transport:DNA recombination:regulation of transcription, DNA-dependent:protein folding:ubiquitin-dependent protein catabolic process:one-carbon metabolic process:cellular iron ion homeostasis:cellular component movement:response to stress:metabolic process:ferric iron binding:protein transporter activity:branched chain family amino acid metabolic process:protein transport:DNA integration:iron-sulfur cluster assembly:oxidoreductase activity:thiamine pyrophosphate binding:2-oxoglutarate synthase activity:unfolded protein binding:protein polymerization:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Cysteine and methionine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Selenocompound metabolism:Selenocompound metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Proteasome:Proteasome:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:ftsZ:ftsZ:TIGR00296:TIGR00296:ahcY:ahcY:ilvE_I:ilvE_I:tatAE:tatAE:YidE_YbjL_dupl:YidE_YbjL_dupl:thermosome_arch:thermosome_arch:arch_flag_Nterm:arch_flag_Nterm:arc_protsome_B:arc_protsome_B:OAFO_sf:OAFO_sf:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Global:Membrane Transport:Environmental Information Processing:Folding Sorting and Degradation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy metabolism:Amino acids and amines:Protein fate:Protein folding and stabilization:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Transport and binding proteins:Unknown substrate:Cellular processes:Cell division:Unknown function:General:Amino acid biosynthesis:Pyruvate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Unknown function:Cellular processes:Transport and binding proteins:Protein fate:Energy metabolism:Pyruvate family:General:Cell division:Unknown substrate:Degradation of proteins, peptides, and glycopeptides:Protein and peptide secretion and trafficking:Protein folding and stabilization:Amino acids and amines:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Metabolism" 50 "Energy production and conversion:Energy production and conversion:Acetyl-CoA acetyltransferase:Acetyl-CoA acetyltransferase:Cell division GTPase:Cell division GTPase:Membrane protease subunits, stomatin/prohibitin homologs:Membrane protease subunits, stomatin/prohibitin homologs:Uncharacterized conserved protein:Uncharacterized conserved protein:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:Cystathionine beta-lyases/cystathionine gamma-synthases:Cystathionine beta-lyases/cystathionine gamma-synthases:Heme/copper-type cytochrome/quinol oxidases, subunit 1:Heme/copper-type cytochrome/quinol oxidases, subunit 1:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Cytochrome bd-type quinol oxidase, subunit 1:Cytochrome bd-type quinol oxidase, subunit 1:ABC-type transport system involved in multi-copper enzyme maturation, permease component:ABC-type transport system involved in multi-copper enzyme maturation, permease component:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Na+/H+ antiporter:Na+/H+ antiporter:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Putative archaeal flagellar protein D/E:Putative archaeal flagellar protein D/E:Predicted transcriptional regulator with C-terminal CBS domains:Predicted transcriptional regulator with C-terminal CBS domains:Plastocyanin:Plastocyanin:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:ciliary or flagellar motility:DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:GTPase activity:cystathionine gamma-synthase activity:acetyl-CoA C-acetyltransferase activity:acetyl-CoA C-acyltransferase activity:alcohol dehydrogenase activity, metal ion-independent:alcohol dehydrogenase activity, zinc-dependent:alcohol dehydrogenase activity, iron-dependent:cytochrome-c oxidase activity:glutaryl-CoA dehydrogenase activity:iron ion binding:copper ion binding:protein binding:ATP binding:GTP binding:tricarboxylic acid cycle:electron transport:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:protein folding:cellular amino acid metabolic process:potassium ion transport:sodium ion transport:regulation of pH:response to stress:metabolic process:zinc ion binding:cation transmembrane transporter activity:phosphoenolpyruvate carboxylase activity:electron carrier activity:aerobic respiration:aa3-type cytochrome c oxidase:ba3-type cytochrome c oxidase:caa3-type cytochrome c oxidase:cbb3-type cytochrome c oxidase:sodium:hydrogen antiporter activity:ATP synthesis coupled proton transport:oxidoreductase activity:heme binding:pyridoxal phosphate binding:DNA protection:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:flavin adenine dinucleotide binding:unfolded protein binding:protein polymerization:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Geraniol degradation:Geraniol degradation:Lysine degradation:Lysine degradation:Tyrosine metabolism:Tyrosine metabolism:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:Selenocompound metabolism:Selenocompound metabolism:alpha-Linolenic acid metabolism:alpha-Linolenic acid metabolism:Pyruvate metabolism:Pyruvate metabolism:Chloroalkane and chloroalkene degradation:Chloroalkane and chloroalkene degradation:Naphthalene degradation:Naphthalene degradation:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:ftsZ:ftsZ:antiport_nhaC:antiport_nhaC:thermosome_arch:thermosome_arch:PEPCase_arch:PEPCase_arch:halo_cynanin:halo_cynanin:Cations and iron carrying compounds:Protein folding and stabilization:Cations and iron carrying compounds:Cell division:Energy metabolism:Protein fate:Transport and binding proteins:Cellular processes:Genetic Information Processing:Metabolism:Metabolism:Transcription:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Other Amino Acids:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Transcription:Global:Metabolism:Energy metabolism:Other:Protein fate:Protein folding and stabilization:Transport and binding proteins:Other:Cellular processes:Cell division:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Global" 51 "K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:potassium ion transport:potassium-transporting ATPase activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:kdpA:kdpA:Environmental Information Processing:Signal Transduction:Transport and binding proteins:Cations and iron carrying compounds:Metabolism:Environmental Information Processing:Signal Transduction:Cations and iron carrying compounds:Transport and binding proteins:Metabolism" 52 "Catalase (peroxidase I):Catalase (peroxidase I):Aspartate/tyrosine/aromatic aminotransferase:Aspartate/tyrosine/aromatic aminotransferase:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):Transposase and inactivated derivatives:Transposase and inactivated derivatives:Arginine deiminase:Arginine deiminase:FOG: Transposase and inactivated derivatives:FOG: Transposase and inactivated derivatives:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Amino acid transport and metabolism:Amino acid transport and metabolism:magnesium ion binding:nucleic acid binding:DNA binding:L-aspartate:2-oxoglutarate aminotransferase activity:catalase activity:inorganic diphosphatase activity:transposase activity:ATP binding:electron transport:transposition, DNA-mediated:protein folding:phosphate-containing compound metabolic process:response to oxidative stress:biosynthetic process:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines:arginine deiminase activity:heme binding:pyridoxal phosphate binding:unfolded protein binding:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Tryptophan metabolism:Tryptophan metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Methane metabolism:Methane metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Function unknown:Function unknown:cat_per_HPI:cat_per_HPI:thermosome_arch:thermosome_arch:Metabolism:Protein fate:Protein folding and stabilization:Cellular processes:Detoxification:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Global:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Amino Acid Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Energy Metabolism:Amino Acid Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Cellular processes:Protein fate:Detoxification:Biosynthesis of Other Secondary Metabolites:Protein folding and stabilization:Global" 53 "Undecaprenyl pyrophosphate synthase:Undecaprenyl pyrophosphate synthase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Thiamine biosynthesis ATP pyrophosphatase:Thiamine biosynthesis ATP pyrophosphatase:Queuine/archaeosine tRNA-ribosyltransferase:Queuine/archaeosine tRNA-ribosyltransferase:Cobalamin-5-phosphate synthase:Cobalamin-5-phosphate synthase:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):ATPase involved in DNA replication:ATPase involved in DNA replication:Na+-driven multidrug efflux pump:Na+-driven multidrug efflux pump:MoxR-like ATPases:MoxR-like ATPases:Predicted hydrolase (HAD superfamily):Predicted hydrolase (HAD superfamily):A/G-specific DNA glycosylase:A/G-specific DNA glycosylase:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted phosphate-binding enzymes, TIM-barrel fold:Predicted phosphate-binding enzymes, TIM-barrel fold:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Sugar phosphate permease:Sugar phosphate permease:Predicted RNA-binding protein, contains TRAM domain:Predicted RNA-binding protein, contains TRAM domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:catalytic activity:histidinol-phosphate transaminase activity:transporter activity:ATP binding:base-excision repair:protein folding:transport:potassium ion transport:drug transmembrane transport:metabolic process:queuine tRNA-ribosyltransferase activity:potassium-transporting ATPase activity:queuosine biosynthetic process:cobalamin 5'-phosphate synthase activity:di-trans,poly-cis-decaprenylcistransferase activity:phosphoglycolate phosphatase activity:thiamine biosynthetic process:cobalamin biosynthetic process:drug transmembrane transporter activity:antiporter activity:transferase activity:transferase activity, transferring nitrogenous groups:ATPase activity:nucleoside-triphosphatase activity:pyridoxal phosphate binding:gas vesicle organization:threonine-phosphate decarboxylase activity:adenosylcobinamide-GDP ribazoletransferase activity:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Histidine metabolism:Histidine metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Thiamine metabolism:Thiamine metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Two-component system:Two-component system:Base excision repair:Base excision repair:Sulfur relay system:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:tgt_general:tgt_general:kdpA:kdpA:matE:matE:L_thr_O3P_dcar:L_thr_O3P_dcar:HAD-SF-IA-v1:HAD-SF-IA-v1:GGGP-family:GGGP-family:F420_cofE:F420_cofE:thermosome_arch:thermosome_arch:gas_vesic_GvpN:gas_vesic_GvpN:Defense mechanisms:Defense mechanisms:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino Acid Metabolism:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein folding and stabilization:Transport and binding proteins:Cations and iron carrying compounds:Other:Cellular processes:Other:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Unknown function:Cellular processes:Transport and binding proteins:Protein fate:Protein synthesis:Heme, porphyrin, and cobalamin:Other:Enzymes of unknown specificity:Other:Other:Cations and iron carrying compounds:Protein folding and stabilization:tRNA and rRNA base modification:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Replication and Repair:Folding Sorting and Degradation:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Biosynthesis of Other Secondary Metabolites:Genetic Information Processing:Folding Sorting and Degradation:Amino Acid Metabolism:Replication and Repair:Metabolism:Environmental Information Processing:Signal Transduction:Poorly characterized:Global" 54 "Predicted ATPase of the PP-loop superfamily implicated in cell cycle control:Predicted ATPase of the PP-loop superfamily implicated in cell cycle control:Glutamate decarboxylase and related PLP-dependent proteins:Glutamate decarboxylase and related PLP-dependent proteins:HD superfamily phosphohydrolases:HD superfamily phosphohydrolases:Acetyltransferases, including N-acetylases of ribosomal proteins:Acetyltransferases, including N-acetylases of ribosomal proteins:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Lysine/ornithine N-monooxygenase:Lysine/ornithine N-monooxygenase:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:magnesium ion binding:catalytic activity:inorganic diphosphatase activity:cellular amino acid metabolic process:phosphate-containing compound metabolic process:N-acetyltransferase activity:metabolic process:transferase activity:carboxy-lyase activity:carboxylic acid metabolic process:pyridoxal phosphate binding:sequence-specific DNA binding:metal ion binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00269:TIGR00269:Hypothetical proteins:Conserved:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Amino Acid Metabolism:Cellular processes and signaling:Information storage and processing:Hypothetical proteins:Conserved:Global:Metabolism:Metabolism:Amino Acid Metabolism:Metabolism:Global:Metabolism:Metabolism" 55 "Membrane protease subunits, stomatin/prohibitin homologs:Membrane protease subunits, stomatin/prohibitin homologs:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:FOG: CheY-like receiver:FOG: CheY-like receiver:Chemotaxis signal transduction protein:Chemotaxis signal transduction protein:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain:Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:two-component response regulator activity:two-component signal transduction system (phosphorelay):sequence-specific DNA binding transcription factor activity:signal transducer activity:protein binding:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:chemotaxis:response to stress:signal transduction:zinc ion binding:protein-glutamate methylesterase activity:nucleotide metabolic process:hydrolase activity:DNA protection:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Two-component system:Two-component system:Bacterial chemotaxis:Bacterial chemotaxis:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:Information storage and processing:Cellular Processes:Environmental Information Processing:Genetic Information Processing:Cell Motility:Signal Transduction:Transcription:Transcription:Genetic Information Processing:Environmental Information Processing:Signal Transduction:Cellular Processes:Cell Motility:Information storage and processing:Cellular processes and signaling:Poorly characterized:Poorly characterized:Cellular processes and signaling" 56 "Glycosyltransferase:Glycosyltransferase:Type II restriction enzyme, methylase subunits:Type II restriction enzyme, methylase subunits:nucleic acid binding:DNA modification:methyltransferase activity:biosynthetic process:methylation:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Defense mechanisms:Defense mechanisms:Cellular processes and signaling:Cellular processes and signaling" 57 "tRNA and rRNA cytosine-C5-methylases:tRNA and rRNA cytosine-C5-methylases:Phosphate/sulphate permeases:Phosphate/sulphate permeases:Predicted divalent heavy-metal cations transporter:Predicted divalent heavy-metal cations transporter:Superfamily II DNA/RNA helicases, SNF2 family:Superfamily II DNA/RNA helicases, SNF2 family:Na+/proline symporter:Na+/proline symporter:Nicotinamide mononucleotide adenylyltransferase:Nicotinamide mononucleotide adenylyltransferase:Mismatch repair ATPase (MutS family):Mismatch repair ATPase (MutS family):Protein implicated in ribosomal biogenesis, Nop56p homolog:Protein implicated in ribosomal biogenesis, Nop56p homolog:Transcriptional regulators:Transcriptional regulators:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Predicted membrane protein:Predicted membrane protein:Predicted membrane-bound mannosyltransferase:Predicted membrane-bound mannosyltransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:mannosyltransferase activity:nicotinamide-nucleotide adenylyltransferase activity:DNA binding:sequence-specific DNA binding transcription factor activity:helicase activity:transporter activity:inorganic phosphate transmembrane transporter activity:ATP binding:mismatch repair:regulation of transcription, DNA-dependent:protein O-linked glycosylation:transport:phosphate ion transport:NAD biosynthetic process:hydrolase activity:metal ion transport:mismatched DNA binding:metal ion transmembrane transporter activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:Function unknown:Function unknown:cyt_tran_rel:cyt_tran_rel:TIGR03663:TIGR03663:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism:Cellular processes and signaling:Information storage and processing:Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Metabolism:Global:Cellular processes and signaling:Metabolism of Cofactors and Vitamins:Metabolism:Information storage and processing" 58 "Trk-type K+ transport systems, membrane components:Trk-type K+ transport systems, membrane components:structural constituent of ribosome:translation:cation transport:cation transmembrane transporter activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Metabolism:Metabolism" 59 "Energy production and conversion:Energy production and conversion:Arginase/agmatinase/formimionoglutamate hydrolase, arginase family:Arginase/agmatinase/formimionoglutamate hydrolase, arginase family:Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Ferredoxin:Ferredoxin:Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):DNA-directed RNA polymerase, subunit E':DNA-directed RNA polymerase, subunit E':Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Uncharacterized proteins of PilT N-term./Vapc superfamily:Uncharacterized proteins of PilT N-term./Vapc superfamily:Predicted transcription factor, homolog of eukaryotic MBF1:Predicted transcription factor, homolog of eukaryotic MBF1:DNA-directed RNA polymerase, subunit E'':DNA-directed RNA polymerase, subunit E'':Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase):Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase):Amino acid transport and metabolism:Amino acid transport and metabolism:rhodopsin-like receptor activity:DNA binding:sequence-specific DNA binding transcription factor activity:RNA binding:translation initiation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTPase activity:protein binding:GTP binding:electron transport:transcription, DNA-dependent:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:translational initiation:polyamine biosynthetic process:G-protein coupled receptor signaling pathway:positive transcription elongation factor activity:zinc ion binding:agmatinase activity:electron carrier activity:oxidoreductase activity:sequence-specific DNA binding:positive regulation of transcription, DNA-dependent:metal ion binding:iron-sulfur cluster binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Metabolic pathways:Metabolic pathways:RNA polymerase:RNA polymerase:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:eIF_5A:eIF_5A:small_GTP:small_GTP:TIGR00270:TIGR00270:rpoE:rpoE:agmatinase:agmatinase:Hypothetical proteins:Conserved:Unknown function:General:Information storage and processing:Metabolism:Poorly characterized:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Protein synthesis:Global:DNA-dependent RNA polymerase:Translation factors:Conserved:General:Transcription:Protein synthesis:Hypothetical proteins:Unknown function:Metabolism:Transcription:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Genetic Information Processing:Transcription:Global:Metabolism:Transcription:DNA-dependent RNA polymerase:Genetic Information Processing:Translation factors" 60 "Undecaprenyl pyrophosphate synthase:Undecaprenyl pyrophosphate synthase:Na+-driven multidrug efflux pump:Na+-driven multidrug efflux pump:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Predicted transcriptional regulator:Predicted transcriptional regulator:Predicted phosphate-binding enzymes, TIM-barrel fold:Predicted phosphate-binding enzymes, TIM-barrel fold:Predicted RNA-binding protein, contains TRAM domain:Predicted RNA-binding protein, contains TRAM domain:signal transducer activity:drug transmembrane transport:chemotaxis:signal transduction:metabolic process:di-trans,poly-cis-decaprenylcistransferase activity:drug transmembrane transporter activity:antiporter activity:transferase activity:sequence-specific DNA binding:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Cell motility:Cell motility:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:matE:matE:GGGP-family:GGGP-family:Defense mechanisms:Defense mechanisms:Poorly characterized:Transport and binding proteins:Metabolism:Cellular processes and signaling:Information storage and processing:Transport and binding proteins:Other:Information storage and processing:Other:Cellular processes and signaling:Metabolism:Poorly characterized" 61 "Energy production and conversion:Energy production and conversion:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Glycine/serine hydroxymethyltransferase:Glycine/serine hydroxymethyltransferase:Cell division GTPase:Cell division GTPase:Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase:Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase:Threonine synthase:Threonine synthase:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Chemotaxis protein histidine kinase and related kinases:Chemotaxis protein histidine kinase and related kinases:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:FOG: CheY-like receiver:FOG: CheY-like receiver:Precorrin-3B methylase:Precorrin-3B methylase:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Cobalamin biosynthesis protein CobN and related Mg-chelatases:Cobalamin biosynthesis protein CobN and related Mg-chelatases:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Flavoprotein involved in thiazole biosynthesis:Flavoprotein involved in thiazole biosynthesis:Chemotaxis protein CheC, inhibitor of MCP methylation:Chemotaxis protein CheC, inhibitor of MCP methylation:Chemotaxis protein; stimulates methylation of MCP proteins:Chemotaxis protein; stimulates methylation of MCP proteins:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Electron transfer flavoprotein, alpha subunit:Electron transfer flavoprotein, alpha subunit:Cobalamin biosynthesis protein CbiG:Cobalamin biosynthesis protein CbiG:Precorrin isomerase:Precorrin isomerase:Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain:Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain:Precorrin-6B methylase 1:Precorrin-6B methylase 1:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):magnesium ion binding:dihydrolipoyl dehydrogenase activity:cysteine-type endopeptidase activity:glutaryl-CoA dehydrogenase activity:glycine hydroxymethyltransferase activity:inorganic diphosphatase activity:pyruvate dehydrogenase (acetyl-transferring) activity:dihydrolipoyllysine-residue acetyltransferase activity:threonine synthase activity:transporter activity:protein binding:ATP binding:GTP binding:sugar binding:electron transport:regulation of transcription, DNA-dependent:proteolysis:glycine metabolic process:L-serine metabolic process:phosphate-containing compound metabolic process:transport:cellular component movement:chemotaxis:microtubule-based process:metabolic process:metallopeptidase activity:5'-nucleotidase activity:zinc ion binding:protein methyltransferase activity:phosphomethylpyrimidine kinase activity:protein-glutamate methylesterase activity:electron carrier activity:biosynthetic process:threonine biosynthetic process:nucleotide catabolic process:thiamine biosynthetic process:cobalamin biosynthetic process:oxidoreductase activity:precorrin-8X methylmutase activity:IMP-GMP specific 5'-nucleotidase activity:peptidyl-histidine phosphorylation:pyridoxal phosphate binding:precorrin-3B C17-methyltransferase activity:cell redox homeostasis:precorrin-6Y C5,15-methyltransferase (decarboxylating) activity:metal ion binding:protein-glutamine glutaminase activity:flavin adenine dinucleotide binding:cobaltochelatase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell motility:Cell motility:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Fatty acid metabolism:Fatty acid metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Lysine degradation:Lysine degradation:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:Cyanoamino acid metabolism:Cyanoamino acid metabolism:Pyruvate metabolism:Pyruvate metabolism:Butanoate metabolism:Butanoate metabolism:One carbon pool by folate:One carbon pool by folate:Methane metabolism:Methane metabolism:Thiamine metabolism:Thiamine metabolism:Vitamin B6 metabolism:Vitamin B6 metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:Bacterial chemotaxis:Bacterial chemotaxis:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:HMP-P_kinase:HMP-P_kinase:thrC:thrC:TIGR00292:TIGR00292:lipoamide_DH:lipoamide_DH:TAT_signal_seq:TAT_signal_seq:cobJ_cbiH:cobJ_cbiH:cobalto_cobN:cobalto_cobN:CbiE:CbiE:PDH_E1_alph_x:PDH_E1_alph_x:Cell Motility:Signal Transduction:Cell Motility:Metabolism:Metabolism:Environmental Information Processing:Cellular Processes:Global:Pyruvate dehydrogenase:Protein and peptide secretion and trafficking:Aspartate family:Heme, porphyrin, and cobalamin:Thiamine:Energy metabolism:Protein fate:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Membrane Transport:Signal Transduction:Cellular Processes:Membrane Transport:Global:Metabolism:Energy metabolism:Pyruvate dehydrogenase:Protein fate:Protein and peptide secretion and trafficking:Amino acid biosynthesis:Aspartate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Thiamine:Cellular processes and signaling:Metabolism:Poorly characterized:Xenobiotics Biodegradation and Metabolism" 62 "K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:High-affinity K+ transport system, ATPase chain B:High-affinity K+ transport system, ATPase chain B:nucleic acid binding:ATP binding:regulation of nitrogen utilization:potassium ion transport:response to stress:metabolic process:cation transmembrane transporter activity:potassium-transporting ATPase activity:transcription repressor activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:Signal transduction mechanisms:Signal transduction mechanisms:kdpA:kdpA:Cations and iron carrying compounds:Cellular processes and signaling:Metabolism:Transport and binding proteins:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Metabolism:Cellular processes and signaling:Environmental Information Processing:Signal Transduction:Transport and binding proteins" 63 "Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:High-affinity K+ transport system, ATPase chain B:High-affinity K+ transport system, ATPase chain B:ATP binding:potassium ion transport:metabolic process:potassium-transporting ATPase activity:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:kdpA:kdpA:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Cellular processes and signaling:Metabolism:Cellular processes and signaling:Information storage and processing:Transport and binding proteins:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Environmental Information Processing:Metabolism:Signal Transduction" 64 "Phosphoribosylanthranilate isomerase:Phosphoribosylanthranilate isomerase:Anthranilate/para-aminobenzoate synthases component I:Anthranilate/para-aminobenzoate synthases component I:Anthranilate/para-aminobenzoate synthases component II:Anthranilate/para-aminobenzoate synthases component II:Anthranilate phosphoribosyltransferase:Anthranilate phosphoribosyltransferase:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Amino acid transport and metabolism:Amino acid transport and metabolism:tryptophan biosynthetic process:anthranilate phosphoribosyltransferase activity:anthranilate synthase activity:phosphoribosylanthranilate isomerase activity:signal transducer activity:transporter activity:glutamine metabolic process:tryptophan metabolic process:transport:chemotaxis:signal transduction:biosynthetic process:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell motility:Cell motility:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Signal transduction mechanisms:Signal transduction mechanisms:trpG_papA:trpG_papA:trpD:trpD:TrpE-arch:TrpE-arch:Amino Acid Metabolism:Amino acid biosynthesis:Aromatic amino acid family:Global:Metabolism:Cellular processes and signaling:Metabolism:Metabolism:Amino Acid Metabolism:Global:Metabolism:Amino acid biosynthesis:Aromatic amino acid family:Cellular processes and signaling:Metabolism:Metabolism" 65 "Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Predicted hydrolase (metallo-beta-lactamase superfamily):Predicted hydrolase (metallo-beta-lactamase superfamily):sequence-specific DNA binding transcription factor activity:protein binding:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:zinc ion binding:hydrolase activity:Transcription:Transcription:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:Transcription:Transcription:Information storage and processing:Poorly characterized:Genetic Information Processing:Poorly characterized:Information storage and processing:Genetic Information Processing" 66 "Energy production and conversion:Energy production and conversion:Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L2:Ribosomal protein L2:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein S8:Ribosomal protein S8:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein S19:Ribosomal protein S19:Ribosomal protein L24:Ribosomal protein L24:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Translation initiation factor 2, alpha subunit (eIF-2alpha):Translation initiation factor 2, alpha subunit (eIF-2alpha):Ribosomal protein S17E:Ribosomal protein S17E:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Heme/copper-type cytochrome/quinol oxidase, subunit 3:Heme/copper-type cytochrome/quinol oxidase, subunit 3:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L21E:Ribosomal protein L21E:Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:nucleotide binding:nucleic acid binding:DNA binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:cytochrome-c oxidase activity:electron transport:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:aa3-type cytochrome c oxidase:ba3-type cytochrome c oxidase:caa3-type cytochrome c oxidase:cbb3-type cytochrome c oxidase:rRNA binding:ribosome biogenesis:protein dimerization activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:Two-component system:Two-component system:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Function unknown:Function unknown:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:rpsS_arch:rpsS_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:L3_arch:L3_arch:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:L21P_arch:L21P_arch:Genetic Information Processing:Protein synthesis:Global:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Nucleotide Metabolism:Genetic Information Processing:Transcription:Translation:Environmental Information Processing:Signal Transduction:Global:Metabolism:Protein synthesis:Ribosomal proteins: synthesis and modification:Information storage and processing:Metabolism:Poorly characterized:Environmental Information Processing:Ribosomal proteins: synthesis and modification:Metabolism:Metabolism:Signal Transduction:Translation:Transcription:Nucleotide Metabolism:Energy Metabolism" 67 "Energy production and conversion:Energy production and conversion:Succinyl-CoA synthetase, alpha subunit:Succinyl-CoA synthetase, alpha subunit:Precorrin-3B methylase:Precorrin-3B methylase:FKBP-type peptidyl-prolyl cis-trans isomerases 2:FKBP-type peptidyl-prolyl cis-trans isomerases 2:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit B:Archaeal/vacuolar-type H+-ATPase subunit B:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit C:Archaeal/vacuolar-type H+-ATPase subunit C:Cobalamin biosynthesis protein CbiG:Cobalamin biosynthesis protein CbiG:Precorrin-6B methylase 2:Precorrin-6B methylase 2:Precorrin-2 methylase:Precorrin-2 methylase:Predicted transcriptional regulator:Predicted transcriptional regulator:Site-specific recombinase XerD:Site-specific recombinase XerD:DNA binding:peptidyl-prolyl cis-trans isomerase activity:hydrogen-transporting two-sector ATPase activity:cyclophilin:succinate-CoA ligase (ADP-forming) activity:ATP binding:DNA recombination:metabolic process:protein methyltransferase activity:cobalamin biosynthetic process:DNA integration:ATP synthesis coupled proton transport:proton transport:FK506-sensitive peptidyl-prolyl cis-trans isomerase:precorrin-2 C20-methyltransferase activity:precorrin-3B C17-methyltransferase activity:cyclophilin-type peptidyl-prolyl cis-trans isomerase activity:precorrin-6Y C5,15-methyltransferase (decarboxylating) activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Propanoate metabolism:Propanoate metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:sucCoAalpha:sucCoAalpha:ATP_syn_B_arch:ATP_syn_B_arch:ATP_syn_A_arch:ATP_syn_A_arch:cobJ_cbiH:cobJ_cbiH:CbiT:CbiT:AhaC:AhaC:AhaH:AhaH:Energy metabolism:ATP-proton motive force interconversion:TCA cycle:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Carbohydrate Metabolism:Energy metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Metabolism:Metabolism:Global:ATP-proton motive force interconversion:TCA cycle:Biosynthesis of cofactors, prosthetic groups, and carriers:Global:Metabolism:Heme, porphyrin, and cobalamin" 68 "Integral membrane protein possibly involved in chromosome condensation:Integral membrane protein possibly involved in chromosome condensation:Deoxyribose-phosphate aldolase:Deoxyribose-phosphate aldolase:Carbamoylphosphate synthase small subunit:Carbamoylphosphate synthase small subunit:GMP synthase - Glutamine amidotransferase domain:GMP synthase - Glutamine amidotransferase domain:ABC-type Fe3+-hydroxamate transport system, periplasmic component:ABC-type Fe3+-hydroxamate transport system, periplasmic component:Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit:Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit:Formyltetrahydrofolate hydrolase:Formyltetrahydrofolate hydrolase:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Predicted transcriptional regulators:Predicted transcriptional regulators:Isopentenyldiphosphate isomerase:Isopentenyldiphosphate isomerase:Asparaginase:Asparaginase:Transcriptional regulators:Transcriptional regulators:Acetyltransferases, including N-acetylases of ribosomal proteins:Acetyltransferases, including N-acetylases of ribosomal proteins:Transcriptional regulators:Transcriptional regulators:Uncharacterized conserved protein:Uncharacterized conserved protein:Erythromycin esterase homolog:Erythromycin esterase homolog:FOG: Transposase and inactivated derivatives:FOG: Transposase and inactivated derivatives:Type IV secretory pathway, VirB4 components:Type IV secretory pathway, VirB4 components:Predicted membrane protein:Predicted membrane protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleic acid binding:DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:GMP synthase (glutamine-hydrolyzing) activity:asparaginase activity:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity:deoxyribose-phosphate aldolase activity:carboxypeptidase activity:isopentenyl-diphosphate delta-isomerase activity:transposase activity:aminoacyl-tRNA ligase activity:signal transducer activity:iron ion transmembrane transporter activity:iron ion binding:ATP binding:'de novo' IMP biosynthetic process:DNA modification:transposition, DNA-mediated:regulation of transcription, DNA-dependent:tRNA aminoacylation for protein translation:regulation of translational fidelity:glycoprotein catabolic process:glutamine metabolic process:nitrogen compound metabolic process:high-affinity iron ion transport:chemotaxis:signal transduction:N-acetyltransferase activity:metabolic process:isoprenoid biosynthetic process:beta-aspartyl-peptidase activity:formyltetrahydrofolate deformylase activity:biosynthetic process:deoxyribonucleotide catabolic process:oxygen transport:amino acid binding:hydroxymethyl-, formyl- and related transferase activity:hydrolase activity:oxygen binding:heme binding:sequence-specific DNA binding:response to antibiotic:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Pentose phosphate pathway:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Cyanoamino acid metabolism:Cyanoamino acid metabolism:Glyoxylate and dicarboxylate metabolism:Glyoxylate and dicarboxylate metabolism:One carbon pool by folate:One carbon pool by folate:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Nitrogen metabolism:Nitrogen metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:deoC:deoC:gatC:gatC:CPSaseIIsmall:CPSaseIIsmall:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Translation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Other:Pyrimidine ribonucleotide biosynthesis:tRNA aminoacylation:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Protein synthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Translation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Other:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA aminoacylation:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 69 "K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:High-affinity K+ transport system, ATPase chain B:High-affinity K+ transport system, ATPase chain B:ATP binding:regulation of nitrogen utilization:potassium ion transport:metabolic process:cation transmembrane transporter activity:potassium-transporting ATPase activity:transcription repressor activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:kdpA:kdpA:Transport and binding proteins:Cations and iron carrying compounds:Metabolism:Transport and binding proteins:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Environmental Information Processing:Metabolism:Signal Transduction" 70 "Molybdopterin-guanine dinucleotide biosynthesis protein:Molybdopterin-guanine dinucleotide biosynthesis protein:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Mo-molybdopterin cofactor biosynthetic process:potassium ion transport:potassium-transporting ATPase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:Sulfur relay system:Sulfur relay system:kdpA:kdpA:Environmental Information Processing:Signal Transduction:Transport and binding proteins:Cations and iron carrying compounds:Metabolism:Signal Transduction:Folding Sorting and Degradation:Cations and iron carrying compounds:Environmental Information Processing:Transport and binding proteins:Genetic Information Processing:Metabolism:Genetic Information Processing:Folding Sorting and Degradation" 71 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Cell division GTPase:Cell division GTPase:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:S-adenosylhomocysteine hydrolase:S-adenosylhomocysteine hydrolase:20S proteasome, alpha and beta subunits:20S proteasome, alpha and beta subunits:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):Cold shock proteins:Cold shock proteins:Sec-independent protein secretion pathway components:Sec-independent protein secretion pathway components:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleic acid binding:DNA binding:GTPase activity:adenosylhomocysteinase activity:branched-chain-amino-acid transaminase activity:endopeptidase activity:threonine-type endopeptidase activity:proteasome endopeptidase activity:protein binding:ATP binding:GTP binding:electron transport:DNA recombination:regulation of transcription, DNA-dependent:ubiquitin-dependent protein catabolic process:one-carbon metabolic process:transport:cellular iron ion homeostasis:response to stress:ferric iron binding:zinc ion binding:protein transporter activity:branched chain family amino acid metabolic process:cobalamin biosynthetic process:protein transport:DNA integration:iron-sulfur cluster assembly:oxidoreductase activity:sirohydrochlorin cobaltochelatase activity:ATPase activity:thiamine pyrophosphate binding:metal ion binding:2-oxoglutarate synthase activity:protein polymerization:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Cysteine and methionine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Selenocompound metabolism:Selenocompound metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Proteasome:Proteasome:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:Function unknown:Function unknown:ftsZ:ftsZ:TIGR00296:TIGR00296:ahcY:ahcY:ilvE_I:ilvE_I:tatAE:tatAE:YidE_YbjL_dupl:YidE_YbjL_dupl:sufB:sufB:sufD:sufD:arc_protsome_B:arc_protsome_B:OAFO_sf:OAFO_sf:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Environmental Information Processing:Membrane Transport:Biosynthesis of cofactors, prosthetic groups, and carriers:Global:Metabolism:Amino acid biosynthesis:Unknown function:Cellular processes:Transport and binding proteins:Protein fate:Energy metabolism:Other:Pyruvate family:Energy metabolism:Amino acids and amines:Protein fate:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Transport and binding proteins:Unknown substrate:Cellular processes:Cell division:Unknown function:General:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:General:Cell division:Unknown substrate:Degradation of proteins, peptides, and glycopeptides:Protein and peptide secretion and trafficking:Amino acids and amines:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Amino Acid Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism of Other Amino Acids:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism:Cellular processes and signaling:Genetic Information Processing:Folding Sorting and Degradation:Information storage and processing" 72 "Predicted ATPase:Predicted ATPase:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:High-affinity K+ transport system, ATPase chain B:High-affinity K+ transport system, ATPase chain B:phospholipase A2 activity:calcium ion binding:ATP binding:phospholipid metabolic process:regulation of nitrogen utilization:potassium ion transport:response to stress:metabolic process:cation transmembrane transporter activity:potassium-transporting ATPase activity:lipid catabolic process:transcription repressor activity:oxidoreductase activity, acting on the CH-CH group of donors:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:kdpA:kdpA:Transport and binding proteins:Cations and iron carrying compounds:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Signal Transduction:Transport and binding proteins:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Environmental Information Processing" 73 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Aspartate oxidase:Nicotinate-nucleotide pyrophosphorylase:Nicotinate-nucleotide pyrophosphorylase:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Aspartate/tyrosine/aromatic aminotransferase:Aspartate/tyrosine/aromatic aminotransferase:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Phytoene/squalene synthetase:Phytoene/squalene synthetase:Predicted transcriptional regulators:Predicted transcriptional regulators:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:Amino acid transport and metabolism:Amino acid transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:beta-carotene 15,15'-monooxygenase activity:acetate-CoA ligase activity:L-aspartate:2-oxoglutarate aminotransferase activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:ion channel activity:ATP binding:electron transport:regulation of transcription, DNA-dependent:ion transport:N-acetyltransferase activity:metabolic process:L-aspartate oxidase activity:nitrate reductase activity:electron carrier activity:biosynthetic process:NAD biosynthetic process:cellular response to phosphate starvation:AMP binding:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:transferase activity, transferring nitrogenous groups:1-aminocyclopropane-1-carboxylate synthase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:pyridoxal phosphate binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Pyruvate metabolism:Pyruvate metabolism:Propanoate metabolism:Propanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadC:nadC:sensory_box:sensory_box:Ac_CoA_lig_AcsA:Ac_CoA_lig_AcsA:blh_monoox:blh_monoox:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Information storage and processing:Energy Metabolism:Carbohydrate Metabolism:Pyridine nucleotides:Metabolism:Metabolism:Global:Biosynthesis of cofactors, prosthetic groups, and carriers:Regulatory functions:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Metabolism of Terpenoids and Polyketides:Carbohydrate Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Small molecule interactions:Regulatory functions:Small molecule interactions:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Information storage and processing" 74 "Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:dTDP-glucose pyrophosphorylase:dTDP-glucose pyrophosphorylase:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:signal transducer activity:potassium ion transport:chemotaxis:signal transduction:potassium-transporting ATPase activity:glucose-1-phosphate thymidylyltransferase activity:biosynthetic process:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Streptomycin biosynthesis:Streptomycin biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Two-component system:Two-component system:Signal transduction mechanisms:Signal transduction mechanisms:kdpA:kdpA:Cations and iron carrying compounds:Cellular processes and signaling:Metabolism:Signal Transduction:Biosynthesis of Other Secondary Metabolites:Metabolism:Metabolism:Environmental Information Processing:Global:Cations and iron carrying compounds:Transport and binding proteins:Cellular processes and signaling:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Environmental Information Processing:Signal Transduction:Global:Metabolism:Transport and binding proteins" 75 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Glutamine synthetase:Glutamine synthetase:Uncharacterized NAD(FAD)-dependent dehydrogenases:Uncharacterized NAD(FAD)-dependent dehydrogenases:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Amino acid transport and metabolism:Amino acid transport and metabolism:hydrogen-transporting two-sector ATPase activity:branched-chain-amino-acid transaminase activity:glutamate-ammonia ligase activity:electron transport:glutamine biosynthetic process:branched chain family amino acid metabolic process:nitrogen fixation:ATP synthesis coupled proton transport:proton transport:oxidoreductase activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Oxidative phosphorylation:Oxidative phosphorylation:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Arginine and proline metabolism:Arginine and proline metabolism:Methane metabolism:Methane metabolism:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:General function prediction only:General function prediction only:GlnA:GlnA:ilvE_I:ilvE_I:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Glutamate family:Pyruvate family:Amino acid biosynthesis:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Signal Transduction:Global:Metabolism:Amino acid biosynthesis:Glutamate family:Pyruvate family:Cellular processes and signaling:Poorly characterized" 76 "Glutamine synthetase:Glutamine synthetase:ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:ABC-type Co2+ transport system, permease component:ABC-type Co2+ transport system, permease component:ABC-type sugar transport system, permease component:ABC-type sugar transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type cobalt transport system, permease component CbiQ and related transporters:ABC-type cobalt transport system, permease component CbiQ and related transporters:Phosphate uptake regulator:Phosphate uptake regulator:ABC-type dipeptide transport system, periplasmic component:ABC-type dipeptide transport system, periplasmic component:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type sugar transport systems, permease components:ABC-type sugar transport systems, permease components:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:ABC-type sugar transport system, periplasmic component:ABC-type sugar transport system, periplasmic component:ABC-type cobalt transport system, periplasmic component:ABC-type cobalt transport system, periplasmic component:ABC-type sugar transport systems, ATPase components:ABC-type sugar transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:glutamate-ammonia ligase activity:transporter activity:inorganic phosphate transmembrane transporter activity:binding:ATP binding:proteolysis:glutamine biosynthetic process:transport:phosphate ion transport:cobalt ion transport:serine-type peptidase activity:cobalamin biosynthetic process:nitrogen fixation:cobalt ion transmembrane transporter activity:peptide transporter activity:phosphate ion transmembrane-transporting ATPase activity:peptide transport:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances:ATPase activity:ATPase activity, coupled to transmembrane movement of substances:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:cbiM:cbiM:GlnA:GlnA:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:TAT_signal_seq:TAT_signal_seq:oligo_HPY:oligo_HPY:phoU_full:phoU_full:ptsS_2:ptsS_2:phosphate_pstC:phosphate_pstC:CbiQ_TIGR:CbiQ_TIGR:Environmental Information Processing:Protein fate:Protein and peptide secretion and trafficking:Transport and binding proteins:Amino acids, peptides and amines:Anions:Cations and iron carrying compounds:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Metabolism:Signal Transduction:Membrane Transport:Amino Acid Metabolism:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Metabolism:Metabolism:Global:Metabolism:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Transport and binding proteins:Protein fate:Heme, porphyrin, and cobalamin:Glutamate family:Cations and iron carrying compounds:Anions:Amino acids, peptides and amines:Protein and peptide secretion and trafficking:Global:Metabolism:Signal Transduction:Membrane Transport:Environmental Information Processing" 77 "Energy production and conversion:Energy production and conversion:Argininosuccinate synthase:Argininosuccinate synthase:Argininosuccinate lyase:Argininosuccinate lyase:ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:Threonine synthase:Threonine synthase:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:NADPH:quinone reductase and related Zn-dependent oxidoreductases:NADPH:quinone reductase and related Zn-dependent oxidoreductases:Predicted dehydrogenases and related proteins:Predicted dehydrogenases and related proteins:6-pyruvoyl-tetrahydropterin synthase:6-pyruvoyl-tetrahydropterin synthase:ABC-type dipeptide transport system, periplasmic component:ABC-type dipeptide transport system, periplasmic component:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Threonine dehydrogenase and related Zn-dependent dehydrogenases:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Alkaline phosphatase:Alkaline phosphatase:GAF domain-containing protein:GAF domain-containing protein:Zn-dependent carboxypeptidase:Zn-dependent carboxypeptidase:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Putative Ser protein kinase:Putative Ser protein kinase:Amino acid transport and metabolism:Amino acid transport and metabolism:sequence-specific DNA binding transcription factor activity:6-pyruvoyltetrahydropterin synthase activity:NADPH:quinone reductase activity:alkaline phosphatase activity:argininosuccinate synthase activity:argininosuccinate lyase activity:asparagine synthase (glutamine-hydrolyzing) activity:metallocarboxypeptidase activity:threonine synthase activity:signal transducer activity:transporter activity:inorganic phosphate transmembrane transporter activity:ATP binding:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:proteolysis:arginine biosynthetic process:asparagine biosynthetic process:transport:phosphate ion transport:chemotaxis:signal transduction:metabolic process:zinc ion binding:biosynthetic process:threonine biosynthetic process:peptide transporter activity:phosphate ion transmembrane-transporting ATPase activity:peptide transport:oxidoreductase activity:ATPase activity:sigma factor activity:pyridoxal phosphate binding:arginine biosynthetic process via ornithine:GTP cyclohydrolase IIa activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Aminobenzoate degradation:Aminobenzoate degradation:Vitamin B6 metabolism:Vitamin B6 metabolism:Folate biosynthesis:Folate biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:argG:argG:thrC:thrC:argH:argH:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:TAT_signal_seq:TAT_signal_seq:oligo_HPY:oligo_HPY:phosphate_pstC:phosphate_pstC:Protein fate:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Membrane Transport:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Protein and peptide secretion and trafficking:Amino acids, peptides and amines:Anions:Aspartate family:Glutamate family:Protein fate:Transport and binding proteins:Amino acid biosynthesis:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Protein and peptide secretion and trafficking:Transport and binding proteins:Amino acids, peptides and amines:Anions:Amino acid biosynthesis:Aspartate family:Glutamate family:Cellular processes and signaling:Metabolism:Poorly characterized" 78 "Energy production and conversion:Energy production and conversion:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Cell division GTPase:Cell division GTPase:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):Superoxide dismutase:Superoxide dismutase:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:MoxR-like ATPases:MoxR-like ATPases:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Predicted ATP-dependent protease:Predicted ATP-dependent protease:Archaeal flagellins:Archaeal flagellins:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Uncharacterized conserved protein:Uncharacterized conserved protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:succinate dehydrogenase activity:rhodopsin-like receptor activity:DNA binding:GTPase activity:branched-chain-amino-acid transaminase activity:ATP-dependent peptidase activity:glutaryl-CoA dehydrogenase activity:superoxide dismutase activity:structural molecule activity:protein binding:ATP binding:GTP binding:electron transport:DNA recombination:regulation of transcription, DNA-dependent:protein folding:proteolysis:superoxide metabolic process:cellular component movement:G-protein coupled receptor signaling pathway:transcription factor binding:endopeptidase La activity:branched chain family amino acid metabolic process:DNA integration:photosynthesis:chlorophyll biosynthetic process:iron-sulfur cluster assembly:magnesium chelatase activity:ATPase activity:nucleoside-triphosphatase activity:protein catabolic process:thiamine pyrophosphate binding:gas vesicle organization:metal ion binding:2-oxoglutarate synthase activity:flavin adenine dinucleotide binding:unfolded protein binding:protein polymerization:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Lysine degradation:Lysine degradation:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:Butanoate metabolism:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:ftsZ:ftsZ:TIGR00296:TIGR00296:lon_rel:lon_rel:ilvE_I:ilvE_I:sufB:sufB:sufD:sufD:thermosome_arch:thermosome_arch:arch_flag_Nterm:arch_flag_Nterm:gas_vesic_GvpN:gas_vesic_GvpN:OAFO_sf:OAFO_sf:Global:Degradation of proteins, peptides, and glycopeptides:Cell division:Other:General:Pyruvate family:Other:Protein fate:Cellular processes:Unknown function:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism:Metabolism:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Global:Metabolism:Protein fate:Protein folding and stabilization:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Cell division:Other:Unknown function:General:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein folding and stabilization" 79 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Cell division GTPase:Cell division GTPase:Inorganic pyrophosphatase:Inorganic pyrophosphatase:S-adenosylhomocysteine hydrolase:S-adenosylhomocysteine hydrolase:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:20S proteasome, alpha and beta subunits:20S proteasome, alpha and beta subunits:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Cold shock proteins:Cold shock proteins:FOG: HEAT repeat:FOG: HEAT repeat:Archaeal flagellins:Archaeal flagellins:Predicted transcriptional regulators:Predicted transcriptional regulators:Sec-independent protein secretion pathway components:Sec-independent protein secretion pathway components:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:DNA-binding protein:DNA-binding protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Plastocyanin:Plastocyanin:Site-specific recombinase XerD:Site-specific recombinase XerD:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:succinate dehydrogenase activity:magnesium ion binding:DNA binding:translation elongation factor activity:GTPase activity:adenosylhomocysteinase activity:asparagine synthase (glutamine-hydrolyzing) activity:endopeptidase activity:threonine-type endopeptidase activity:proteasome endopeptidase activity:inorganic diphosphatase activity:structural molecule activity:binding:copper ion binding:protein binding:GTP binding:electron transport:DNA recombination:regulation of transcription, DNA-dependent:translational elongation:proteolysis:ubiquitin-dependent protein catabolic process:asparagine biosynthetic process:one-carbon metabolic process:phosphate-containing compound metabolic process:cellular iron ion homeostasis:cellular component movement:response to stress:ferric iron binding:metallopeptidase activity:zinc ion binding:protein-synthesizing GTPase activity:protein transporter activity:electron carrier activity:cobalamin biosynthetic process:protein transport:DNA integration:iron-sulfur cluster assembly:oxidoreductase activity:sirohydrochlorin cobaltochelatase activity:metal ion binding:protein polymerization:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Selenocompound metabolism:Selenocompound metabolism:Butanoate metabolism:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Proteasome:Proteasome:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:ftsZ:ftsZ:small_GTP:small_GTP:ahcY:ahcY:tatAE:tatAE:sufD:sufD:arch_flag_Nterm:arch_flag_Nterm:arc_protsome_B:arc_protsome_B:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:General:Cell division:Other:Energy metabolism:Protein fate:Cellular processes:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Degradation of proteins, peptides, and glycopeptides:Protein and peptide secretion and trafficking:Amino acids and amines:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Amino acids and amines:Protein fate:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Cell division:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Membrane Transport:Folding Sorting and Degradation" 80 "Phosphate/sulphate permeases:Phosphate/sulphate permeases:Uncharacterized low-complexity proteins:Uncharacterized low-complexity proteins:Acyl dehydratase:Acyl dehydratase:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:nucleic acid binding:DNA binding:carboxypeptidase activity:aminoacyl-tRNA ligase activity:inorganic phosphate transmembrane transporter activity:ATP binding:regulation of transcription, DNA-dependent:tRNA aminoacylation for protein translation:phosphate ion transport:metabolic process:zinc ion binding:oxidoreductase activity:Lipid transport and metabolism:Lipid transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Function unknown:Function unknown:Cellular processes and signaling:Metabolism:Cellular processes and signaling:Poorly characterized:Poorly characterized:Metabolism" 81 "Energy production and conversion:Energy production and conversion:Predicted sugar kinase:Predicted sugar kinase:Molybdenum cofactor biosynthesis enzyme:Molybdenum cofactor biosynthesis enzyme:Glycerol dehydrogenase and related enzymes:Glycerol dehydrogenase and related enzymes:ATPases of the AAA+ class:ATPases of the AAA+ class:ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:Archaeal flagellins:Archaeal flagellins:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:glutamate-ammonia ligase activity:structural molecule activity:ATP binding:DNA repair:DNA recombination:glutamine biosynthetic process:Mo-molybdopterin cofactor biosynthetic process:cellular component movement:metabolic process:glycerol dehydrogenase activity:cobalamin biosynthetic process:four-way junction helicase activity:nucleoside-triphosphatase activity:cobyrinic acid a,c-diamide synthase activity:metal ion binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycerolipid metabolism:Glycerolipid metabolism:Metabolic pathways:Metabolic pathways:Sulfur relay system:Sulfur relay system:yjeF_cterm:yjeF_cterm:moaC:moaC:CDC48:CDC48:arch_flag_Nterm:arch_flag_Nterm:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Cellular processes and signaling:Metabolism:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Lipid Metabolism:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:General:Global:Cellular processes and signaling:Metabolism:Metabolism:Lipid Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Global:Metabolism:Unknown function:General" 82 "Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein L24:Ribosomal protein L24:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Lactoylglutathione lyase and related lyases:Lactoylglutathione lyase and related lyases:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Translation initiation factor 2, alpha subunit (eIF-2alpha):Translation initiation factor 2, alpha subunit (eIF-2alpha):Predicted GTPase:Predicted GTPase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein S27E:Ribosomal protein S27E:Translation elongation factor EF-1beta:Translation elongation factor EF-1beta:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L21E:Ribosomal protein L21E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleotide binding:DNA binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:translation elongation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTP binding:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:ferrous iron transmembrane transporter activity:ferrous iron transport:rRNA binding:ribosome biogenesis:protein dimerization activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Pyruvate metabolism:Metabolic pathways:Metabolic pathways:Two-component system:Two-component system:Ribosome:Ribosome:RNA polymerase:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:small_GTP:small_GTP:aEF-1_beta:aEF-1_beta:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:L3_arch:L3_arch:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:rpl4p_arch:rpl4p_arch:L21P_arch:L21P_arch:Signal Transduction:Environmental Information Processing:Translation:Transcription:Genetic Information Processing:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Carbohydrate Metabolism:Transcription:Unknown function:Protein synthesis:General:Translation factors:Ribosomal proteins: synthesis and modification:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Translation:Nucleotide Metabolism:Metabolism:Protein synthesis:Ribosomal proteins: synthesis and modification:Translation factors:Unknown function:General:Information storage and processing:Metabolism:Poorly characterized:Global" 83 "Hemolysins and related proteins containing CBS domains:Hemolysins and related proteins containing CBS domains:nucleic acid binding:DNA modification:General function prediction only:General function prediction only:Poorly characterized:Poorly characterized" 84 "Energy production and conversion:Energy production and conversion:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Phytoene/squalene synthetase:Phytoene/squalene synthetase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Predicted membrane protein:Predicted membrane protein:Predicted exonuclease:Predicted exonuclease:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:GTPase:GTPase:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:nucleic acid binding:beta-carotene 15,15'-monooxygenase activity:GTPase activity:acetate-CoA ligase activity:ion channel activity:ATP binding:GTP binding:electron transport:regulation of transcription, DNA-dependent:translation:ion transport:response to stress:N-acetyltransferase activity:metabolic process:protein-synthesizing GTPase activity:nitrate reductase activity:electron carrier activity:biosynthetic process:AMP binding:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Pyruvate metabolism:Pyruvate metabolism:Propanoate metabolism:Propanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:Ac_CoA_lig_AcsA:Ac_CoA_lig_AcsA:blh_monoox:blh_monoox:Metabolism of Terpenoids and Polyketides:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Regulatory functions:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Energy Metabolism:Carbohydrate Metabolism:Poorly characterized:Regulatory functions:Small molecule interactions:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Global" 85 "ATPase involved in DNA repair:ATPase involved in DNA repair:Enoyl-CoA hydratase/carnithine racemase:Enoyl-CoA hydratase/carnithine racemase:enoyl-CoA hydratase activity:metabolic process:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Fatty acid metabolism:Fatty acid metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Geraniol degradation:Geraniol degradation:Lysine degradation:Lysine degradation:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:beta-Alanine metabolism:beta-Alanine metabolism:Aminobenzoate degradation:Aminobenzoate degradation:Propanoate metabolism:Propanoate metabolism:Butanoate metabolism:Butanoate metabolism:Limonene and pinene degradation:Limonene and pinene degradation:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Metabolism of Other Amino Acids:Metabolism of Other Amino Acids:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Lipid Metabolism:Xenobiotics Biodegradation and Metabolism:Carbohydrate Metabolism:Global:Metabolism:Information storage and processing:Metabolism:Metabolism:Global:Information storage and processing:Metabolism:Metabolism:Carbohydrate Metabolism:Lipid Metabolism:Metabolism:Amino Acid Metabolism:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides" 86 "Glutamine amidotransferase:Glutamine amidotransferase:tRNA and rRNA cytosine-C5-methylases:tRNA and rRNA cytosine-C5-methylases:Phosphate/sulphate permeases:Phosphate/sulphate permeases:Predicted divalent heavy-metal cations transporter:Predicted divalent heavy-metal cations transporter:Predicted ATPase:Predicted ATPase:Carbamoylphosphate synthase small subunit:Carbamoylphosphate synthase small subunit:Uncharacterized conserved protein:Uncharacterized conserved protein:Na+/proline symporter:Na+/proline symporter:Mismatch repair ATPase (MutS family):Mismatch repair ATPase (MutS family):Isopentenyldiphosphate isomerase:Isopentenyldiphosphate isomerase:Transcriptional regulators:Transcriptional regulators:ATP:corrinoid adenosyltransferase:ATP:corrinoid adenosyltransferase:Chitinase:Chitinase:Site-specific recombinase XerD:Site-specific recombinase XerD:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:histidine biosynthetic process:DNA binding:sequence-specific DNA binding transcription factor activity:RNA binding:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity:isopentenyl-diphosphate delta-isomerase activity:peroxidase activity:pseudouridylate synthase activity:transporter activity:inorganic phosphate transmembrane transporter activity:ATP binding:chitin catabolic process:electron transport:mismatch repair:DNA recombination:regulation of transcription, DNA-dependent:glutamine metabolic process:nitrogen compound metabolic process:transport:phosphate ion transport:response to oxidative stress:metabolic process:isoprenoid biosynthetic process:cob(I)yrinic acid a,c-diamide adenosyltransferase activity:endochitinase activity:biosynthetic process:cobalamin biosynthetic process:pseudouridine synthase activity:DNA integration:oxidoreductase activity, acting on the CH-CH group of donors:transferase activity, transferring pentosyl groups:hydrolase activity:heme binding:metal ion transport:carbohydrate binding:mismatched DNA binding:tRNA pseudouridine synthesis:cation binding:sequence-specific DNA binding:metal ion transmembrane transporter activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Histidine metabolism:Histidine metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:tRNA_TruD_broad:tRNA_TruD_broad:CPSaseIIsmall:CPSaseIIsmall:IMP_synth_hisH:IMP_synth_hisH:Histidine family:Information storage and processing:Metabolism:Poorly characterized:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:tRNA and rRNA base modification:Pyrimidine ribonucleotide biosynthesis:Global:Metabolism:Poorly characterized:Metabolism:Amino acid biosynthesis:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Information storage and processing:Histidine family:Purines, pyrimidines, nucleosides, and nucleotides:Protein synthesis:Metabolism:Global:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA and rRNA base modification:Amino acid biosynthesis" 87 "Phosphoribosylanthranilate isomerase:Phosphoribosylanthranilate isomerase:Phosphate/sulphate permeases:Phosphate/sulphate permeases:Glycosyltransferase:Glycosyltransferase:Anthranilate/para-aminobenzoate synthases component II:Anthranilate/para-aminobenzoate synthases component II:Anthranilate phosphoribosyltransferase:Anthranilate phosphoribosyltransferase:Spermidine/putrescine-binding periplasmic protein:Spermidine/putrescine-binding periplasmic protein:Amino acid transport and metabolism:Amino acid transport and metabolism:tryptophan biosynthetic process:anthranilate phosphoribosyltransferase activity:anthranilate synthase activity:phosphoribosylanthranilate isomerase activity:inorganic phosphate transmembrane transporter activity:glutamine metabolic process:tryptophan metabolic process:phosphate ion transport:biosynthetic process:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:trpG_papA:trpG_papA:trpD:trpD:Metabolism:Membrane Transport:Amino Acid Metabolism:Environmental Information Processing:Metabolism:Global:Aromatic amino acid family:Amino acid biosynthesis:Metabolism:Cellular processes and signaling:Metabolism:Metabolism:Amino Acid Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Amino acid biosynthesis:Aromatic amino acid family:Cellular processes and signaling" 88 "Uroporphyrinogen-III methylase:Uroporphyrinogen-III methylase:Lipoate-protein ligase A:Lipoate-protein ligase A:Glutamate dehydrogenase/leucine dehydrogenase:Glutamate dehydrogenase/leucine dehydrogenase:Glycosyltransferase:Glycosyltransferase:Sugar kinases, ribokinase family:Sugar kinases, ribokinase family:Thiamine monophosphate kinase:Thiamine monophosphate kinase:Small-conductance mechanosensitive channel:Small-conductance mechanosensitive channel:Sec-independent protein secretion pathway component TatC:Sec-independent protein secretion pathway component TatC:Superfamily II helicase:Superfamily II helicase:Uroporphyrinogen-III synthase:Uroporphyrinogen-III synthase:tRNA splicing endonuclease:tRNA splicing endonuclease:Predicted RNA methylase:Predicted RNA methylase:Predicted methyltransferase:Predicted methyltransferase:Methylase of polypeptide chain release factors:Methylase of polypeptide chain release factors:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:tRNA-intron endonuclease activity:nucleic acid binding:DNA binding:catalytic activity:DNA topoisomerase type I activity:glutamate dehydrogenase [NAD(P)+] activity:uroporphyrin-III C-methyltransferase activity:uroporphyrinogen-III synthase activity:protein binding:ATP binding:tRNA splicing, via endonucleolytic cleavage and ligation:protein modification process:cellular amino acid metabolic process:porphyrin-containing compound biosynthetic process:ATP-dependent helicase activity:methyltransferase activity:thiamine-phosphate kinase activity:biosynthetic process:thiamine biosynthetic process:methylation:tetrapyrrole biosynthetic process:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Thiamine metabolism:Thiamine metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:endA:endA:hemK_rel_arch:hemK_rel_arch:thiL:thiL:cobA_cysG_Cterm:cobA_cysG_Cterm:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Poorly characterized:Transcription:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:RNA processing:Enzymes of unknown specificity:Heme, porphyrin, and cobalamin:Thiamine:Transcription:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy Metabolism:RNA processing:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Thiamine:Information storage and processing:Cellular processes and signaling:Metabolism" 89 "Phosphate/sulphate permeases:Phosphate/sulphate permeases:DNA or RNA helicases of superfamily II:DNA or RNA helicases of superfamily II:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:TATA-box binding protein (TBP), component of TFIID and TFIIIB:TATA-box binding protein (TBP), component of TFIID and TFIIIB:Transposase and inactivated derivatives:Transposase and inactivated derivatives:nucleotide binding:nucleic acid binding:DNA binding:RNA polymerase II transcription factor activity:helicase activity:inorganic phosphate transmembrane transporter activity:ATP binding:regulation of transcription, DNA-dependent:transcription initiation from RNA polymerase II promoter:phosphate ion transport:transcription factor binding:DNA integration:hydrolase activity:nucleoside-triphosphatase activity:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Basal transcription factors:Basal transcription factors:TIGR02928:TIGR02928:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling:Metabolism:Genetic Information Processing:Metabolism:Cellular processes and signaling:DNA metabolism:DNA replication, recombination, and repair:Genetic Information Processing:Transcription:Information storage and processing:Transcription:DNA metabolism" 90 "Energy production and conversion:Energy production and conversion:Pyridoxine biosynthesis enzyme:Pyridoxine biosynthesis enzyme:Signal recognition particle GTPase:Signal recognition particle GTPase:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:ABC-type transport system involved in multi-copper enzyme maturation, permease component:ABC-type transport system involved in multi-copper enzyme maturation, permease component:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:succinate dehydrogenase activity:cell killing:catalytic activity:ATP binding:GTP binding:electron transport:SRP-dependent cotranslational protein targeting to membrane:metabolic process:7S RNA binding:thiamine biosynthetic process:ATPase activity:nucleoside-triphosphatase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Butanoate metabolism:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Vitamin B6 metabolism:Vitamin B6 metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:ftsY:ftsY:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Energy Metabolism:Global:Metabolism:Metabolism of Cofactors and Vitamins:Protein fate:Protein and peptide secretion and trafficking:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Protein and peptide secretion and trafficking:Folding Sorting and Degradation:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Metabolism:Membrane Transport:Carbohydrate Metabolism:Carbohydrate Metabolism:Poorly characterized:Energy Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Cellular processes and signaling" 91 "Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:DNA binding:sequence-specific DNA binding transcription factor activity:carboxypeptidase activity:subtilase activity:nuclease activity:aminoacyl-tRNA ligase activity:protein binding:ATP binding:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:tRNA aminoacylation for protein translation:proteolysis:zinc ion binding:hydrolase activity:ATPase activity:Transcription:Transcription:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:Defense mechanisms:Defense mechanisms:Transcription:Information storage and processing:Cellular processes and signaling:Poorly characterized:Genetic Information Processing:Cellular processes and signaling:Information storage and processing:Poorly characterized:Genetic Information Processing:Transcription" 92 "Energy production and conversion:Energy production and conversion:Acetyl-CoA hydrolase:Acetyl-CoA hydrolase:Anthranilate phosphoribosyltransferase:Anthranilate phosphoribosyltransferase:Uncharacterized conserved protein:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:tryptophan biosynthetic process:catalytic activity:anthranilate phosphoribosyltransferase activity:acetyl-CoA metabolic process:citrate CoA-transferase activity:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Function unknown:Function unknown:trpD:trpD:primase_Cterm:primase_Cterm:Metabolism:Global:Metabolism:Amino Acid Metabolism:Mobile and extrachromosomal element functions:Prophage functions:Amino acid biosynthesis:Aromatic amino acid family:Metabolism:Poorly characterized:Metabolism:Mobile and extrachromosomal element functions:Aromatic amino acid family:Amino acid biosynthesis:Prophage functions:Global:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism" 93 "Uncharacterized conserved protein:Uncharacterized conserved protein:Function unknown:Function unknown:primase_Cterm:primase_Cterm:Prophage functions:Mobile and extrachromosomal element functions:Prophage functions:Poorly characterized:Mobile and extrachromosomal element functions:Poorly characterized" 94 "Energy production and conversion:Energy production and conversion:Acetyl-CoA hydrolase:Acetyl-CoA hydrolase:Na+/H+ antiporter:Na+/H+ antiporter:Acyl dehydratase:Acyl dehydratase:Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Glutamate mutase epsilon subunit:Glutamate mutase epsilon subunit:Uncharacterized conserved protein:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:catalytic activity:acetyl-CoA metabolic process:sodium ion transport:regulation of pH:metabolic process:citrate CoA-transferase activity:sodium:hydrogen antiporter activity:oxidoreductase activity:anaerobic glutamate catabolic process:cobalamin binding:metal ion binding:methylaspartate mutase activity:Lipid transport and metabolism:Lipid transport and metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Metabolic pathways:Metabolic pathways:Function unknown:Function unknown:MthylAspMutase:MthylAspMutase:MthylAspMut_E:MthylAspMut_E:primase_Cterm:primase_Cterm:Prophage functions:Metabolism:Poorly characterized:Global:Metabolism:Metabolism:Carbohydrate Metabolism:Mobile and extrachromosomal element functions:Energy metabolism:Prophage functions:Fermentation:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Global:Metabolism:Energy metabolism:Fermentation:Mobile and extrachromosomal element functions" 95 "Energy production and conversion:Energy production and conversion:Acetyl-CoA hydrolase:Acetyl-CoA hydrolase:ABC-type Fe3+-siderophore transport system, permease component:ABC-type Fe3+-siderophore transport system, permease component:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Type II secretory pathway, prepilin signal peptidase PulO and related peptidases:Type II secretory pathway, prepilin signal peptidase PulO and related peptidases:Acyl dehydratase:Acyl dehydratase:Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Glutamate mutase epsilon subunit:Glutamate mutase epsilon subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:sequence-specific DNA binding transcription factor activity:catalytic activity:transporter activity:protein binding:ATP binding:acetyl-CoA metabolic process:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:transport:metabolic process:peptidase activity:zinc ion binding:citrate CoA-transferase activity:iron-chelate-transporting ATPase activity:oxidoreductase activity:hydrolase activity:ATPase activity:anaerobic glutamate catabolic process:cobalamin binding:metal ion binding:methylaspartate mutase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Metabolic pathways:Metabolic pathways:ABC transporters:ABC transporters:Basal transcription factors:Basal transcription factors:MthylAspMutase:MthylAspMutase:MthylAspMut_E:MthylAspMut_E:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Metabolism:Metabolism:Membrane Transport:Transcription:Energy metabolism:Fermentation:Carbohydrate Metabolism:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Genetic Information Processing:Transcription:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Fermentation:Information storage and processing:Cellular processes and signaling" 96 "Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Predicted hydrolase (HAD superfamily):Predicted hydrolase (HAD superfamily):Predicted glycosyltransferases:Predicted glycosyltransferases:Amino acid transport and metabolism:Amino acid transport and metabolism:histidinol-phosphate transaminase activity:phosphoglycolate phosphatase activity:cobalamin biosynthetic process:transferase activity, transferring nitrogenous groups:pyridoxal phosphate binding:threonine-phosphate decarboxylase activity:Histidine metabolism:Histidine metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:L_thr_O3P_dcar:L_thr_O3P_dcar:fkbM_fam:fkbM_fam:HAD-SF-IA-v1:HAD-SF-IA-v1:Global:Biosynthesis of Other Secondary Metabolites:Metabolism:Global:Metabolism:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Metabolism:Poorly characterized:Amino Acid Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Unknown function:Heme, porphyrin, and cobalamin:Enzymes of unknown specificity" 97 "Predicted nucleic acid-binding protein, contains PIN domain:Predicted nucleic acid-binding protein, contains PIN domain:Transposase and inactivated derivatives, IS5 family:Transposase and inactivated derivatives, IS5 family:DNA binding:subtilase activity:endonuclease activity:transposase activity:transposition, DNA-mediated:proteolysis:DNA restriction-modification system:Replication, recombination and repair:Replication, recombination and repair:General function prediction only:General function prediction only:Information storage and processing:Poorly characterized:Information storage and processing:Poorly characterized" 98 "Ribosomal protein S12:Ribosomal protein S12:Ribosomal protein S7:Ribosomal protein S7:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):DNA-directed RNA polymerase, beta' subunit/160 kD subunit:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:Transcription elongation factor:Transcription elongation factor:ATPases of the AAA+ class:ATPases of the AAA+ class:RecA-superfamily ATPases implicated in signal transduction:RecA-superfamily ATPases implicated in signal transduction:DNA-directed RNA polymerase, subunit H, RpoH/RPB5:DNA-directed RNA polymerase, subunit H, RpoH/RPB5:DNA binding:RNA binding:structural constituent of ribosome:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:ATP binding:DNA repair:DNA recombination:transcription, DNA-dependent:translation:zinc ion binding:four-way junction helicase activity:nucleoside-triphosphatase activity:gas vesicle organization:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Signal transduction mechanisms:Signal transduction mechanisms:S23_S12_E_A:S23_S12_E_A:S7_S5_E_A:S7_S5_E_A:CDC48:CDC48:nusA_arch:nusA_arch:RNA_pol_rpoA2:RNA_pol_rpoA2:RNA_pol_rpoA1:RNA_pol_rpoA1:rpoB_arch:rpoB_arch:Cellular processes and signaling:Metabolism:Metabolism:Genetic Information Processing:Global:DNA-dependent RNA polymerase:Ribosomal proteins: synthesis and modification:Transcription:Protein synthesis:Translation:Transcription:Nucleotide Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Nucleotide Metabolism:Genetic Information Processing:Transcription:Translation:Global:Metabolism:Transcription:DNA-dependent RNA polymerase:Protein synthesis:Ribosomal proteins: synthesis and modification:Information storage and processing" 99 "Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L2:Ribosomal protein L2:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L5:Ribosomal protein L5:Ribosomal protein S8:Ribosomal protein S8:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein S15P/S13E:Ribosomal protein S15P/S13E:Ribosomal protein S19:Ribosomal protein S19:Ribosomal protein L24:Ribosomal protein L24:Ribosomal protein L15:Ribosomal protein L15:Preprotein translocase subunit SecY:Preprotein translocase subunit SecY:Ribosomal protein L10:Ribosomal protein L10:Ribosomal protein L18:Ribosomal protein L18:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Translation initiation factor 2, alpha subunit (eIF-2alpha):Translation initiation factor 2, alpha subunit (eIF-2alpha):RNase P/RNase MRP subunit p29:RNase P/RNase MRP subunit p29:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein L30/L7E:Ribosomal protein L30/L7E:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:nucleotide binding:nucleic acid binding:DNA binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:ribonuclease P activity:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:tRNA processing:5S rRNA binding:protein secretion:P-P-bond-hydrolysis-driven protein transmembrane transporter activity:rRNA binding:ribosome biogenesis:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:Two-component system:Two-component system:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:3a0501s007:3a0501s007:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:rpsS_arch:rpsS_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:L30P_arch:L30P_arch:L3_arch:L3_arch:arch_S11P:arch_S11P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:L21P_arch:L21P_arch:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Genetic Information Processing:Protein and peptide secretion and trafficking:Information storage and processing:Cellular processes and signaling:Metabolism:Nucleotide Metabolism:Genetic Information Processing:Transcription:Translation:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein and peptide secretion and trafficking:Information storage and processing:Cellular processes and signaling:Ribosomal proteins: synthesis and modification:Global:Environmental Information Processing:Protein synthesis:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Folding Sorting and Degradation:Translation:Transcription:Nucleotide Metabolism:Protein fate" 100 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Superoxide dismutase:Superoxide dismutase:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Archaeal flagellins:Archaeal flagellins:Predicted transcriptional regulators:Predicted transcriptional regulators:Uncharacterized conserved protein:Uncharacterized conserved protein:Putative archaeal flagellar protein D/E:Putative archaeal flagellar protein D/E:succinate dehydrogenase activity:ciliary or flagellar motility:superoxide dismutase activity:structural molecule activity:protein binding:electron transport:superoxide metabolic process:cellular component movement:vesicle-mediated transport:metal ion binding:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Butanoate metabolism:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Function unknown:Function unknown:arch_flag_Nterm:arch_flag_Nterm:Global:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism:Energy Metabolism:Carbohydrate Metabolism:Energy Metabolism:Carbohydrate Metabolism:Global:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Metabolism" 101 "Lipoate-protein ligase A:Lipoate-protein ligase A:catalytic activity:protein modification process:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Metabolism:Metabolism" 102 "Predicted glycosyltransferases:Predicted glycosyltransferases:General function prediction only:General function prediction only:fkbM_fam:fkbM_fam:Poorly characterized:Poorly characterized" 103 "ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized conserved protein:Uncharacterized conserved protein:aspartic-type endopeptidase activity:ATP binding:iron-chelate-transporting ATPase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:ABC transporters:Function unknown:Function unknown:primase_Cterm:primase_Cterm:Mobile and extrachromosomal element functions:Prophage functions:Metabolism:Poorly characterized:Mobile and extrachromosomal element functions:Prophage functions:Environmental Information Processing:Membrane Transport:Metabolism:Poorly characterized:Environmental Information Processing:Membrane Transport" 104 "Energy production and conversion:Energy production and conversion:Acetyl-CoA hydrolase:Acetyl-CoA hydrolase:ABC-type Fe3+-siderophore transport system, permease component:ABC-type Fe3+-siderophore transport system, permease component:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:Type II secretory pathway, prepilin signal peptidase PulO and related peptidases:Type II secretory pathway, prepilin signal peptidase PulO and related peptidases:Acyl dehydratase:Acyl dehydratase:Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Methylaspartate ammonia-lyase:Methylaspartate ammonia-lyase:Glutamate mutase epsilon subunit:Glutamate mutase epsilon subunit:Uncharacterized conserved protein:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:catalytic activity:aspartic-type endopeptidase activity:transporter activity:ATP binding:acetyl-CoA metabolic process:transport:metabolic process:peptidase activity:citrate CoA-transferase activity:iron-chelate-transporting ATPase activity:oxidoreductase activity:anaerobic glutamate catabolic process:cobalamin binding:metal ion binding:methylaspartate ammonia-lyase activity:methylaspartate mutase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:ABC transporters:ABC transporters:Function unknown:Function unknown:MthylAspMutase:MthylAspMutase:B_methylAsp_ase:B_methylAsp_ase:MthylAspMut_E:MthylAspMut_E:primase_Cterm:primase_Cterm:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Carbohydrate Metabolism:Energy metabolism:Metabolism:Prophage functions:Fermentation:Global:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Fermentation:Mobile and extrachromosomal element functions:Prophage functions:Cellular processes and signaling:Mobile and extrachromosomal element functions:Poorly characterized:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Energy Metabolism" 105 "Energy production and conversion:Energy production and conversion:Acetyl-CoA hydrolase:Acetyl-CoA hydrolase:FOG: WD40-like repeat:FOG: WD40-like repeat:Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Site-specific recombinase XerD:Site-specific recombinase XerD:Uncharacterized conserved protein:Uncharacterized conserved protein:DNA binding:catalytic activity:acetyl-CoA metabolic process:electron transport:DNA recombination:citrate CoA-transferase activity:DNA integration:anaerobic glutamate catabolic process:cobalamin binding:metal ion binding:methylaspartate mutase activity:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Metabolic pathways:Metabolic pathways:Function unknown:Function unknown:MthylAspMutase:MthylAspMutase:primase_Cterm:primase_Cterm:Metabolism:Global:Metabolism:Information storage and processing:Global:Energy metabolism:Fermentation:Mobile and extrachromosomal element functions:Prophage functions:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Metabolism:Mobile and extrachromosomal element functions:Energy metabolism:Carbohydrate Metabolism:Prophage functions:Fermentation:Metabolism:Poorly characterized:Carbohydrate Metabolism" 106 "Glutamine amidotransferase:Glutamine amidotransferase:Predicted ATPase:Predicted ATPase:Glycosyltransferase:Glycosyltransferase:Chitinase:Chitinase:Predicted membrane-bound mannosyltransferase:Predicted membrane-bound mannosyltransferase:Site-specific recombinase XerD:Site-specific recombinase XerD:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:mannosyltransferase activity:histidine biosynthetic process:nucleic acid binding:DNA binding:endonuclease activity:peroxidase activity:chitin catabolic process:electron transport:DNA recombination:protein O-linked glycosylation:glutamine metabolic process:response to oxidative stress:metabolic process:zinc ion binding:endochitinase activity:biosynthetic process:DNA integration:oxidoreductase activity, acting on the CH-CH group of donors:transferase activity, transferring pentosyl groups:heme binding:carbohydrate binding:cation binding:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Histidine metabolism:Histidine metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:IMP_synth_hisH:IMP_synth_hisH:TIGR03663:TIGR03663:Amino acid biosynthesis:Histidine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Amino acid biosynthesis:Histidine family:Metabolism:Global:Metabolism:Information storage and processing:Metabolism:Amino Acid Metabolism:Cellular processes and signaling:Global:Amino Acid Metabolism:Metabolism:Metabolism:Poorly characterized" 107 "Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis:Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis:Predicted membrane protein:Predicted membrane protein:ATP binding:transport:nucleoside-triphosphatase activity:Cell motility:Cell motility:Function unknown:Function unknown:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Cellular processes and signaling:Cellular processes and signaling:Poorly characterized:Poorly characterized" 108 "Trk-type K+ transport systems, membrane components:Trk-type K+ transport systems, membrane components:Cytosine deaminase and related metal-dependent hydrolases:Cytosine deaminase and related metal-dependent hydrolases:Uridine kinase:Uridine kinase:HD superfamily phosphohydrolases:HD superfamily phosphohydrolases:Predicted glycosyltransferases:Predicted glycosyltransferases:Predicted nuclease of the RecB family:Predicted nuclease of the RecB family:TATA-box binding protein (TBP), component of TFIID and TFIIIB:TATA-box binding protein (TBP), component of TFIID and TFIIIB:Nucleotide transport and metabolism:Nucleotide transport and metabolism:DNA binding:RNA polymerase II transcription factor activity:catalytic activity:carboxypeptidase activity:aminoacyl-tRNA ligase activity:uridine kinase activity:ATP binding:GTP binding:regulation of transcription, DNA-dependent:transcription initiation from RNA polymerase II promoter:tRNA aminoacylation for protein translation:cation transport:microtubule-based process:cation transmembrane transporter activity:biosynthetic process:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds:regulation of cell cycle:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:udk:udk:fkbM_fam:fkbM_fam:Purines, pyrimidines, nucleosides, and nucleotides:Transcription:Metabolism:Metabolism:Genetic Information Processing:Global:Salvage of nucleosides and nucleotides:Purines, pyrimidines, nucleosides, and nucleotides:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Genetic Information Processing:Transcription:Global:Metabolism:Nucleotide Metabolism:Salvage of nucleosides and nucleotides:Information storage and processing:Metabolism:Poorly characterized" 109 "Energy production and conversion:Energy production and conversion:Inorganic pyrophosphatase:Inorganic pyrophosphatase:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:20S proteasome, alpha and beta subunits:20S proteasome, alpha and beta subunits:Predicted transcriptional regulators:Predicted transcriptional regulators:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:magnesium ion binding:endopeptidase activity:threonine-type endopeptidase activity:proteasome endopeptidase activity:inorganic diphosphatase activity:ubiquitin-dependent protein catabolic process:phosphate-containing compound metabolic process:nucleotide metabolic process:hydrolase activity:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Oxidative phosphorylation:Oxidative phosphorylation:Proteasome:Proteasome:General function prediction only:General function prediction only:Function unknown:Function unknown:arc_protsome_B:arc_protsome_B:Folding Sorting and Degradation:Metabolism:Protein fate:Degradation of proteins, peptides, and glycopeptides:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Protein fate:Degradation of proteins, peptides, and glycopeptides:Genetic Information Processing:Metabolism:Folding Sorting and Degradation:Energy Metabolism:Poorly characterized:Energy Metabolism:Poorly characterized:Genetic Information Processing" 110 "Energy production and conversion:Energy production and conversion:Ribosomal protein S12:Ribosomal protein S12:Ribosomal protein S10:Ribosomal protein S10:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:Glutamyl-tRNA reductase:Glutamyl-tRNA reductase:Translation elongation factors (GTPases):Translation elongation factors (GTPases):Isocitrate dehydrogenases:Isocitrate dehydrogenases:Ferredoxin:Ferredoxin:DNA-directed RNA polymerase, subunit H, RpoH/RPB5:DNA-directed RNA polymerase, subunit H, RpoH/RPB5:Translation elongation factor EF-1alpha (GTPase):Translation elongation factor EF-1alpha (GTPase):DNA binding:structural constituent of ribosome:translation elongation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTPase activity:isocitrate dehydrogenase (NADP+) activity:shikimate 3-dehydrogenase (NADP+) activity:GTP binding:tricarboxylic acid cycle:electron transport:transcription, DNA-dependent:translation:translational elongation:zinc ion binding:protein-synthesizing GTPase activity:glutamyl-tRNA reductase activity:electron carrier activity:tetrapyrrole biosynthetic process:NADP binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Glutathione metabolism:Glutathione metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:RNA polymerase:RNA polymerase:small_GTP:small_GTP:S23_S12_E_A:S23_S12_E_A:hemA:hemA:S10_Arc_S20_Euk:S10_Arc_S20_Euk:RNA_pol_rpoA1:RNA_pol_rpoA1:rpoB_arch:rpoB_arch:Heme, porphyrin, and cobalamin:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Transcription:Translation:Metabolism:Metabolism:Genetic Information Processing:Global:Ribosomal proteins: synthesis and modification:General:Heme, porphyrin, and cobalamin:Protein synthesis:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Transcription:Translation:Global:Metabolism:Protein synthesis:Ribosomal proteins: synthesis and modification:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Metabolism" 111 "Molybdopterin-guanine dinucleotide biosynthesis protein:Molybdopterin-guanine dinucleotide biosynthesis protein:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Predicted DNA binding protein:Predicted DNA binding protein:sequence-specific DNA binding transcription factor activity:acyl-CoA dehydrogenase activity:electron transport:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:Mo-molybdopterin cofactor biosynthetic process:sigma factor activity:flavin adenine dinucleotide binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Geraniol degradation:Geraniol degradation:Naphthalene degradation:Naphthalene degradation:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Sulfur relay system:Sulfur relay system:General function prediction only:General function prediction only:fkbM_fam:fkbM_fam:Folding Sorting and Degradation:Global:Metabolism:Metabolism:Poorly characterized:Metabolism:Folding Sorting and Degradation:Metabolism:Genetic Information Processing:Global:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism:Poorly characterized:Metabolism:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing" 112 "Glutamate decarboxylase and related PLP-dependent proteins:Glutamate decarboxylase and related PLP-dependent proteins:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Acetyltransferases, including N-acetylases of ribosomal proteins:Acetyltransferases, including N-acetylases of ribosomal proteins:Lysine/ornithine N-monooxygenase:Lysine/ornithine N-monooxygenase:Siderophore synthetase component:Siderophore synthetase component:Amino acid transport and metabolism:Amino acid transport and metabolism:cellular amino acid metabolic process:cellular aromatic compound metabolic process:N-acetyltransferase activity:metabolic process:siderophore transmembrane transporter activity:hydrolase activity:carboxy-lyase activity:siderophore biosynthetic process:carboxylic acid metabolic process:pyridoxal phosphate binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Metabolism:Global:Information storage and processing:Metabolism:Poorly characterized:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Global:Metabolism:Metabolism:Amino Acid Metabolism" 113 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):S-adenosylhomocysteine hydrolase:S-adenosylhomocysteine hydrolase:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:Ferredoxin:Ferredoxin:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Thioredoxin-like proteins and domains:Thioredoxin-like proteins and domains:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Archaeal flagellins:Archaeal flagellins:Na+/H+ antiporter:Na+/H+ antiporter:Sec-independent protein secretion pathway components:Sec-independent protein secretion pathway components:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:DNA-binding protein:DNA-binding protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Site-specific recombinase XerD:Site-specific recombinase XerD:DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:adenosylhomocysteinase activity:asparagine synthase (glutamine-hydrolyzing) activity:structural molecule activity:iron ion binding:protein binding:ATP binding:electron transport:DNA recombination:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:protein folding:asparagine biosynthetic process:one-carbon metabolic process:transport:sodium ion transport:cellular iron ion homeostasis:regulation of pH:cellular component movement:response to stress:metabolic process:ferric iron binding:zinc ion binding:protein transporter activity:electron carrier activity:protein transport:DNA integration:sodium:hydrogen antiporter activity:iron-sulfur cluster assembly:oxidoreductase activity:ATPase activity:thiamine pyrophosphate binding:2-oxoglutarate synthase activity:unfolded protein binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Cysteine and methionine metabolism:Cysteine and methionine metabolism:Selenocompound metabolism:Selenocompound metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Basal transcription factors:Basal transcription factors:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00296:TIGR00296:antiport_nhaC:antiport_nhaC:ahcY:ahcY:tatAE:tatAE:YidE_YbjL_dupl:YidE_YbjL_dupl:sufB:sufB:sufD:sufD:thermosome_arch:thermosome_arch:arch_flag_Nterm:arch_flag_Nterm:OAFO_sf:OAFO_sf:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Unknown substrate:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Amino acids and amines:Protein folding and stabilization:Protein and peptide secretion and trafficking:Unknown substrate:Cations and iron carrying compounds:General:Other:Energy metabolism:Protein fate:Transport and binding proteins:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Folding Sorting and Degradation:Transcription:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Transcription:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Amino acids and amines:Protein fate:Protein folding and stabilization:Protein and peptide secretion and trafficking:Transport and binding proteins:Metabolism:Cations and iron carrying compounds:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Membrane Transport" 114 "Energy production and conversion:Energy production and conversion:Succinyl-CoA synthetase, alpha subunit:Succinyl-CoA synthetase, alpha subunit:ABC-type cobalt transport system, permease component CbiQ and related transporters:ABC-type cobalt transport system, permease component CbiQ and related transporters:DNA modification methylase:DNA modification methylase:Precorrin-3B methylase:Precorrin-3B methylase:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit B:Archaeal/vacuolar-type H+-ATPase subunit B:L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases:L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit C:Archaeal/vacuolar-type H+-ATPase subunit C:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Cobalamin biosynthesis protein CbiG:Cobalamin biosynthesis protein CbiG:Precorrin isomerase:Precorrin isomerase:Precorrin-6B methylase 1:Precorrin-6B methylase 1:Precorrin-6B methylase 2:Precorrin-6B methylase 2:Precorrin-2 methylase:Precorrin-2 methylase:TRAP-type uncharacterized transport system, periplasmic component:TRAP-type uncharacterized transport system, periplasmic component:Precorrin-4 methylase:Precorrin-4 methylase:DNA binding:hydrogen-transporting two-sector ATPase activity:cysteine-type endopeptidase activity:isopentenyl-diphosphate delta-isomerase activity:succinate-CoA ligase (ADP-forming) activity:transposase activity:ATP binding:electron transport:DNA methylation:transposition, DNA-mediated:proteolysis:cobalt ion transport:metabolic process:N-methyltransferase activity:protein methyltransferase activity:isoprenoid biosynthetic process:cobalamin biosynthetic process:FMN binding:cobalt ion transmembrane transporter activity:ATP synthesis coupled proton transport:oxidoreductase activity:precorrin-8X methylmutase activity:precorrin-2 C20-methyltransferase activity:precorrin-3B C17-methyltransferase activity:precorrin-6Y C5,15-methyltransferase (decarboxylating) activity:precorrin-4 C11-methyltransferase activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Propanoate metabolism:Propanoate metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:General function prediction only:General function prediction only:sucCoAalpha:sucCoAalpha:ATP_syn_B_arch:ATP_syn_B_arch:ATP_syn_A_arch:ATP_syn_A_arch:cobJ_cbiH:cobJ_cbiH:TRAP_TAXI:TRAP_TAXI:IPP_isom_2:IPP_isom_2:CbiQ_TIGR:CbiQ_TIGR:CbiE:CbiE:CbiT:CbiT:AhaC:AhaC:TCA cycle:Environmental Information Processing:Global:ATP-proton motive force interconversion:TCA cycle:Unknown substrate:Cations and iron carrying compounds:Other:Heme, porphyrin, and cobalamin:Energy metabolism:Transport and binding proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Membrane Transport:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Energy Metabolism:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:ATP-proton motive force interconversion:Metabolism:Transport and binding proteins:Unknown substrate:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Heme, porphyrin, and cobalamin:Information storage and processing:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism" 115 "Trk-type K+ transport systems, membrane components:Trk-type K+ transport systems, membrane components:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Phosphatidylserine decarboxylase:Phosphatidylserine decarboxylase:Predicted nuclease of the RecB family:Predicted nuclease of the RecB family:Predicted metal-dependent hydrolase (urease superfamily):Predicted metal-dependent hydrolase (urease superfamily):Predicted metal-dependent hydrolase:Predicted metal-dependent hydrolase:phosphatidylserine decarboxylase activity:cation transport:potassium ion transport:cation transmembrane transporter activity:phospholipid biosynthetic process:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:Metabolism:Metabolism:Metabolism:Global:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Global:Lipid Metabolism:Information storage and processing:Metabolism:Poorly characterized" 116 "Energy production and conversion:Energy production and conversion:Ribose 5-phosphate isomerase:Ribose 5-phosphate isomerase:ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:RecA/RadA recombinase:RecA/RadA recombinase:Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:ABC-type sulfate transport system, permease component:ABC-type sulfate transport system, permease component:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Methionine synthase II (cobalamin-independent):Methionine synthase II (cobalamin-independent):Na+-dependent transporters of the SNF family:Na+-dependent transporters of the SNF family:Phytoene dehydrogenase and related proteins:Phytoene dehydrogenase and related proteins:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Subtilisin-like serine proteases:Subtilisin-like serine proteases:Transcriptional regulators:Transcriptional regulators:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Uncharacterized protein required for cytochrome oxidase assembly:Uncharacterized protein required for cytochrome oxidase assembly:Uncharacterized conserved protein:Uncharacterized conserved protein:Phospholipid-binding protein:Phospholipid-binding protein:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Uncharacterized conserved protein:Uncharacterized conserved protein:Arabinose efflux permease:Arabinose efflux permease:O-acetylhomoserine sulfhydrylase:O-acetylhomoserine sulfhydrylase:Methenyltetrahydromethanopterin cyclohydrolase:Methenyltetrahydromethanopterin cyclohydrolase:Predicted flavin-nucleotide-binding protein:Predicted flavin-nucleotide-binding protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:polysaccharide catabolic process:nucleic acid binding:DNA binding:damaged DNA binding:sequence-specific DNA binding transcription factor activity:5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity:DNA-(apurinic or apyrimidinic site) lyase activity:O-acetylhomoserine aminocarboxypropyltransferase activity:acyl-CoA dehydrogenase activity:dihydrolipoyl dehydrogenase activity:subtilase activity:helicase activity:monooxygenase activity:ribose-5-phosphate isomerase activity:transporter activity:neurotransmitter:sodium symporter activity:calcium ion binding:ATP binding:electron transport:DNA repair:DNA recombination:regulation of transcription, DNA-dependent:protein complex assembly:proteolysis:cellular amino acid metabolic process:cellular aromatic compound metabolic process:one-carbon metabolic process:transport:neurotransmitter transport:response to stress:DNA-dependent ATPase activity:zinc ion binding:cellular amino acid biosynthetic process:cob(I)yrinic acid a,c-diamide adenosyltransferase activity:Type I site-specific deoxyribonuclease activity:pentose-phosphate shunt, non-oxidative branch:methionine biosynthetic process:thiamine biosynthetic process:cobalamin biosynthetic process:DNA restriction-modification system:FMN binding:oxidoreductase activity:hydrolase activity:methenyltetrahydromethanopterin cyclohydrolase activity:pyridoxal phosphate binding:cobyrinic acid a,c-diamide synthase activity:sequence-specific DNA binding:cell redox homeostasis:flavin adenine dinucleotide binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Pentose phosphate pathway:Pentose phosphate pathway:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Geraniol degradation:Geraniol degradation:Naphthalene degradation:Naphthalene degradation:Methane metabolism:Methane metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Base excision repair:Base excision repair:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:rpiA:rpiA:hsdR:hsdR:TIGR00481:TIGR00481:PduO_Nterm:PduO_Nterm:OAH_OAS_sulfhy:OAH_OAS_sulfhy:Mo_ABC_porter:Mo_ABC_porter:recomb_radB:recomb_radB:one_C_mch:one_C_mch:Defense mechanisms:Defense mechanisms:Environmental Information Processing:Replication and Repair:Heme, porphyrin, and cobalamin:Central intermediary metabolism:One-carbon metabolism:Energy metabolism:Pentose phosphate pathway:DNA metabolism:Restriction/modification:Unknown function:General:Amino acid biosynthesis:Serine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Genetic Information Processing:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Replication and Repair:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Serine family:Metabolism:Cellular processes and signaling:Information storage and processing:Global:One-carbon metabolism:Pentose phosphate pathway:Restriction/modification:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Unknown function:DNA metabolism:Energy metabolism:Central intermediary metabolism:Global:Metabolism:Membrane Transport" 117 "Uncharacterized conserved protein:Uncharacterized conserved protein:Na+-driven multidrug efflux pump:Na+-driven multidrug efflux pump:Mannose-1-phosphate guanylyltransferase:Mannose-1-phosphate guanylyltransferase:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Uncharacterized conserved protein:Uncharacterized conserved protein:Cobyric acid synthase:Cobyric acid synthase:Transcriptional regulators:Transcriptional regulators:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted nucleic acid-binding protein, contains PIN domain:Predicted nucleic acid-binding protein, contains PIN domain:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Signal transduction histidine kinase:Signal transduction histidine kinase:two-component sensor activity:two-component signal transduction system (phosphorelay):nucleic acid binding:sequence-specific DNA binding transcription factor activity:ATP binding:GTP binding:polysaccharide metabolic process:regulation of transcription, DNA-dependent:SRP-dependent cotranslational protein targeting to membrane:drug transmembrane transport:7S RNA binding:mannose-1-phosphate guanylyltransferase (GDP) activity:biosynthetic process:cobalamin biosynthetic process:pathogenesis:drug transmembrane transporter activity:antiporter activity:oxidoreductase activity:ATPase activity:peptidyl-histidine phosphorylation:cobyrinic acid a,c-diamide synthase activity:sequence-specific DNA binding:transition metal ion binding:adenosylcobyric acid synthase (glutamine-hydrolyzing) activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fructose and mannose metabolism:Fructose and mannose metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:cobQ:cobQ:matE:matE:lp_hng_hel_AbrB:lp_hng_hel_AbrB:Defense mechanisms:Defense mechanisms:Carbohydrate Metabolism:DNA interactions:Heme, porphyrin, and cobalamin:Other:Heme, porphyrin, and cobalamin:Regulatory functions:Transport and binding proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Global:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Regulatory functions:DNA interactions:Small molecule interactions:Transport and binding proteins:Other:Biosynthesis of cofactors, prosthetic groups, and carriers:Small molecule interactions:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins" 118 "Energy production and conversion:Energy production and conversion:Pseudouridylate synthase:Pseudouridylate synthase:Tryptophan synthase beta chain:Tryptophan synthase beta chain:Indole-3-glycerol phosphate synthase:Indole-3-glycerol phosphate synthase:Tryptophan synthase alpha chain:Tryptophan synthase alpha chain:Short-chain dehydrogenases of various substrate specificities:Short-chain dehydrogenases of various substrate specificities:Predicted integral membrane protein:Predicted integral membrane protein:Predicted ATPase:Predicted ATPase:Aspartate/tyrosine/aromatic aminotransferase:Aspartate/tyrosine/aromatic aminotransferase:Na+/proline symporter:Na+/proline symporter:Cytidylyltransferase:Cytidylyltransferase:Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Spermidine/putrescine-binding periplasmic protein:Spermidine/putrescine-binding periplasmic protein:3-dehydroquinate dehydratase:3-dehydroquinate dehydratase:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Uncharacterized Fe-S oxidoreductase:Uncharacterized Fe-S oxidoreductase:ABC-type antimicrobial peptide transport system, ATPase component:ABC-type antimicrobial peptide transport system, ATPase component:FOG: WD40-like repeat:FOG: WD40-like repeat:Queuine tRNA-ribosyltransferases, contain PUA domain:Queuine tRNA-ribosyltransferases, contain PUA domain:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis:Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Ketosteroid isomerase-related protein:Ketosteroid isomerase-related protein:Amino acid transport and metabolism:Amino acid transport and metabolism:pseudouridine synthesis:DNA binding:RNA binding:catalytic activity:3-dehydroquinate dehydratase activity:L-aspartate:2-oxoglutarate aminotransferase activity:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity:indole-3-glycerol-phosphate synthase activity:pseudouridylate synthase activity:tryptophan synthase activity:transporter activity:ATP binding:GTP binding:sugar binding:electron transport:tryptophan metabolic process:transport:microtubule-based process:metabolic process:queuine tRNA-ribosyltransferase activity:queuosine biosynthetic process:biosynthetic process:aromatic amino acid family biosynthetic process:pseudouridine synthase activity:protein disulfide oxidoreductase activity:oxidoreductase activity:nucleotidyltransferase activity:ATPase activity:pyridoxal phosphate binding:sequence-specific DNA binding:iron-sulfur cluster binding:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fatty acid biosynthesis:Fatty acid biosynthesis:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Biosynthesis of unsaturated fatty acids:Biosynthesis of unsaturated fatty acids:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:cyt_tran_rel:cyt_tran_rel:trpA:trpA:trpB:trpB:TIGR00374:TIGR00374:unchar_dom_2:unchar_dom_2:sss:sss:arch_flag_Nterm:arch_flag_Nterm:Defense mechanisms:Defense mechanisms:Poorly characterized:Transport and binding proteins:Aromatic amino acid family:Conserved:Cations and iron carrying compounds:Global:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Amino Acid Metabolism:Biosynthesis of Other Secondary Metabolites:Environmental Information Processing:Membrane Transport:Global:Metabolism:Transport and binding proteins:Cations and iron carrying compounds:Hypothetical proteins:Conserved:Amino acid biosynthesis:Aromatic amino acid family:Information storage and processing:Cellular processes and signaling:Metabolism:Amino acid biosynthesis:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Biosynthesis of Other Secondary Metabolites:Amino Acid Metabolism:Lipid Metabolism:Hypothetical proteins" 119 "Energy production and conversion:Energy production and conversion:Alanyl-tRNA synthetase:Alanyl-tRNA synthetase:Ornithine carbamoyltransferase:Ornithine carbamoyltransferase:Lipoate-protein ligase A:Lipoate-protein ligase A:Fructose-1,6-bisphosphatase:Fructose-1,6-bisphosphatase:Proline dehydrogenase:Proline dehydrogenase:Aspartate carbamoyltransferase, catalytic chain:Aspartate carbamoyltransferase, catalytic chain:Signal recognition particle GTPase:Signal recognition particle GTPase:Predicted phosphatases:Predicted phosphatases:Phosphoenolpyruvate synthase/pyruvate phosphate dikinase:Phosphoenolpyruvate synthase/pyruvate phosphate dikinase:Predicted phosphoesterase:Predicted phosphoesterase:NifU homolog involved in Fe-S cluster formation:NifU homolog involved in Fe-S cluster formation:Cytochrome bd-type quinol oxidase, subunit 2:Cytochrome bd-type quinol oxidase, subunit 2:Predicted membrane protein:Predicted membrane protein:Nicotinic acid phosphoribosyltransferase:Nicotinic acid phosphoribosyltransferase:Predicted DNA-binding protein with PD1-like DNA-binding motif:Predicted DNA-binding protein with PD1-like DNA-binding motif:Ribosomal protein S8E:Ribosomal protein S8E:TRAP-type uncharacterized transport system, periplasmic component:TRAP-type uncharacterized transport system, periplasmic component:Predicted ornithine cyclodeaminase, mu-crystallin homolog:Predicted ornithine cyclodeaminase, mu-crystallin homolog:Uncharacterized conserved protein:Uncharacterized conserved protein:Plastocyanin:Plastocyanin:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:succinate dehydrogenase activity:nucleic acid binding:catalytic activity:aspartate carbamoyltransferase activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:nicotinate phosphoribosyltransferase activity:ornithine carbamoyltransferase activity:proline dehydrogenase activity:alanine-tRNA ligase activity:iron ion binding:copper ion binding:protein binding:ATP binding:GTP binding:carbohydrate metabolic process:gluconeogenesis:tricarboxylic acid cycle:electron transport:'de novo' pyrimidine base biosynthetic process:alanyl-tRNA aminoacylation:protein modification process:cellular amino acid metabolic process:glutamate biosynthetic process:proline catabolic process:SRP-dependent cotranslational protein targeting to membrane:metabolic process:7S RNA binding:ornithine cyclodeaminase activity:phosphoglycolate phosphatase activity:pyruvate, water dikinase activity:electron carrier activity:NAD biosynthetic process:iron-sulfur cluster assembly:phosphorylation:oxidoreductase activity:amino acid binding:hydrolase activity:nucleoside-triphosphatase activity:fructose 1,6-bisphosphate 1-phosphatase activity:protein insertion into membrane:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Pentose phosphate pathway:Pentose phosphate pathway:Fructose and mannose metabolism:Fructose and mannose metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Pyruvate metabolism:Pyruvate metabolism:Butanoate metabolism:Butanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Lipoic acid metabolism:Lipoic acid metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:S8e:S8e:alaS:alaS:orni_carb_tr:orni_carb_tr:asp_carb_tr:asp_carb_tr:PEP_synth:PEP_synth:HAD-SF-IA-v1:HAD-SF-IA-v1:TRAP_TAXI:TRAP_TAXI:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Translation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Glycolysis/gluconeogenesis:Pyrimidine ribonucleotide biosynthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Unknown substrate:Enzymes of unknown specificity:Glutamate family:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Protein synthesis:Transport and binding proteins:Unknown function:Amino acid biosynthesis:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Transport and binding proteins:Unknown substrate:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Glutamate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Folding Sorting and Degradation" 120 "Xaa-Pro aminopeptidase:Xaa-Pro aminopeptidase:Cysteine synthase:Cysteine synthase:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain:Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain:Predicted glutathione S-transferase:Predicted glutathione S-transferase:Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:ABC-type antimicrobial peptide transport system, permease component:ABC-type antimicrobial peptide transport system, permease component:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:ABC-type branched-chain amino acid transport systems, periplasmic component:ABC-type branched-chain amino acid transport systems, periplasmic component:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:dTDP-glucose pyrophosphorylase:dTDP-glucose pyrophosphorylase:S-layer domain:S-layer domain:Ribonucleases G and E:Ribonucleases G and E:Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein):Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein):Archaeal enzymes of ATP-grasp superfamily:Archaeal enzymes of ATP-grasp superfamily:Uncharacterized conserved protein:Uncharacterized conserved protein:Arylsulfatase A and related enzymes:Arylsulfatase A and related enzymes:Amino acid transport and metabolism:Amino acid transport and metabolism:cysteine synthase activity:aspartic-type endopeptidase activity:X-Pro dipeptidase activity:glycine cleavage system:glycine dehydrogenase (decarboxylating) activity:long-chain fatty acid-CoA ligase activity:signal transducer activity:transporter activity:binding:proteolysis:glycine metabolic process:creatine metabolic process:transport:chemotaxis:response to stress:signal transduction:metabolic process:sulfuric ester hydrolase activity:glucose-1-phosphate thymidylyltransferase activity:biosynthetic process:cobalamin biosynthetic process:hydrolase activity:creatinase activity:pyridoxal phosphate binding:gas vesicle organization:short-chain fatty acid-CoA ligase activity:medium-chain fatty acid-CoA ligase activity:very long-chain fatty acid-CoA ligase activity:cobyrinic acid a,c-diamide synthase activity:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fatty acid metabolism:Fatty acid metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Selenocompound metabolism:Selenocompound metabolism:Streptomycin biosynthesis:Streptomycin biosynthesis:Sulfur metabolism:Sulfur metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00266:TIGR00266:Defense mechanisms:Defense mechanisms:Hypothetical proteins:Conserved:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Biosynthesis of Other Secondary Metabolites:Metabolism of Other Amino Acids:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism:Metabolism of Other Amino Acids:Poorly characterized:Biosynthesis of Other Secondary Metabolites:Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Hypothetical proteins:Conserved:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing" 121 "DNA repair exonuclease:DNA repair exonuclease:carboxypeptidase activity:exonuclease activity:aminoacyl-tRNA ligase activity:ATP binding:tRNA aminoacylation for protein translation:hydrolase activity:Replication, recombination and repair:Replication, recombination and repair:Information storage and processing:Information storage and processing" 122 "Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis:Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis:Predicted nucleoside-diphosphate-sugar epimerases:Predicted nucleoside-diphosphate-sugar epimerases:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:ATP binding:regulation of nitrogen utilization:transport:transcription repressor activity:nucleoside-triphosphatase activity:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Cellular processes and signaling:Cellular processes and signaling:Metabolism:Metabolism" 123 "Energy production and conversion:Energy production and conversion:Cell division GTPase:Cell division GTPase:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Glutamate dehydrogenase/leucine dehydrogenase:Glutamate dehydrogenase/leucine dehydrogenase:Zn-dependent protease with chaperone function:Zn-dependent protease with chaperone function:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):NAD-dependent aldehyde dehydrogenases:NAD-dependent aldehyde dehydrogenases:Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Archaeal flagellins:Archaeal flagellins:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:catalytic activity:GTPase activity:aldehyde dehydrogenase (NAD) activity:metalloendopeptidase activity:glutamate dehydrogenase [NAD(P)+] activity:structural molecule activity:protein binding:GTP binding:electron transport:DNA recombination:regulation of transcription, DNA-dependent:proteolysis:cellular amino acid metabolic process:cellular iron ion homeostasis:cellular component movement:response to stress:NADH dehydrogenase (ubiquinone) activity:metabolic process:ferric iron binding:DNA integration:iron-sulfur cluster assembly:oxidoreductase activity:protein polymerization:iron-sulfur cluster binding:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Pentose and glucuronate interconversions:Pentose and glucuronate interconversions:Ascorbate and aldarate metabolism:Ascorbate and aldarate metabolism:Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Lysine degradation:Lysine degradation:Arginine and proline metabolism:Arginine and proline metabolism:Histidine metabolism:Histidine metabolism:Tryptophan metabolism:Tryptophan metabolism:beta-Alanine metabolism:beta-Alanine metabolism:Glycerolipid metabolism:Glycerolipid metabolism:Pyruvate metabolism:Pyruvate metabolism:Chloroalkane and chloroalkene degradation:Chloroalkane and chloroalkene degradation:Propanoate metabolism:Propanoate metabolism:Limonene and pinene degradation:Limonene and pinene degradation:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:ftsZ:ftsZ:NuoI:NuoI:sufD:sufD:arch_flag_Nterm:arch_flag_Nterm:Lipid Metabolism:Metabolism of Other Amino Acids:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Metabolism:Metabolism:Global:Electron transport:Cell division:Other:Energy metabolism:Cellular processes:Biosynthesis of cofactors, prosthetic groups, and carriers:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Global:Metabolism:Energy metabolism:Electron transport:Cellular processes:Cell division:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Amino Acid Metabolism" 124 "Energy production and conversion:Energy production and conversion:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Succinyl-CoA synthetase, alpha subunit:Succinyl-CoA synthetase, alpha subunit:ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Signal recognition particle GTPase:Signal recognition particle GTPase:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:Phosphate uptake regulator:Phosphate uptake regulator:DNA modification methylase:DNA modification methylase:Precorrin-3B methylase:Precorrin-3B methylase:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type antimicrobial peptide transport system, ATPase component:ABC-type antimicrobial peptide transport system, ATPase component:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit B:Archaeal/vacuolar-type H+-ATPase subunit B:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Cobalamin biosynthesis protein CobN and related Mg-chelatases:Cobalamin biosynthesis protein CobN and related Mg-chelatases:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit C:Archaeal/vacuolar-type H+-ATPase subunit C:Electron transfer flavoprotein, alpha subunit:Electron transfer flavoprotein, alpha subunit:Cobalamin biosynthesis protein CbiG:Cobalamin biosynthesis protein CbiG:Precorrin isomerase:Precorrin isomerase:Electron transfer flavoprotein, beta subunit:Electron transfer flavoprotein, beta subunit:Precorrin-6B methylase 1:Precorrin-6B methylase 1:Precorrin-2 methylase:Precorrin-2 methylase:cell killing:DNA binding:hydrogen-transporting two-sector ATPase activity:dihydrolipoyl dehydrogenase activity:cysteine-type endopeptidase activity:pyruvate dehydrogenase (acetyl-transferring) activity:dihydrolipoyllysine-residue acetyltransferase activity:succinate-CoA ligase (ADP-forming) activity:inorganic phosphate transmembrane transporter activity:protein binding:ATP binding:GTP binding:sugar binding:electron transport:DNA methylation:proteolysis:SRP-dependent cotranslational protein targeting to membrane:transport:phosphate ion transport:metabolic process:N-methyltransferase activity:protein methyltransferase activity:7S RNA binding:electron carrier activity:biosynthetic process:cobalamin biosynthetic process:phosphate ion transmembrane-transporting ATPase activity:ATP synthesis coupled proton transport:proton transport:ATPase activity:precorrin-8X methylmutase activity:nucleoside-triphosphatase activity:precorrin-2 C20-methyltransferase activity:precorrin-3B C17-methyltransferase activity:cell redox homeostasis:precorrin-6Y C5,15-methyltransferase (decarboxylating) activity:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:flavin adenine dinucleotide binding:cobaltochelatase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Pyruvate metabolism:Pyruvate metabolism:Propanoate metabolism:Propanoate metabolism:Butanoate metabolism:Butanoate metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:ftsY:ftsY:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:sucCoAalpha:sucCoAalpha:ATP_syn_B_arch:ATP_syn_B_arch:ATP_syn_A_arch:ATP_syn_A_arch:lipoamide_DH:lipoamide_DH:cobJ_cbiH:cobJ_cbiH:phoU_full:phoU_full:ptsS_2:ptsS_2:phosphate_pstC:phosphate_pstC:cobalto_cobN:cobalto_cobN:CbiE:CbiE:AhaC:AhaC:AhaH:AhaH:PDH_E1_alph_x:PDH_E1_alph_x:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Folding Sorting and Degradation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Carbohydrate Metabolism:Energy metabolism:ATP-proton motive force interconversion:Pyruvate dehydrogenase:TCA cycle:Protein fate:Protein and peptide secretion and trafficking:Transport and binding proteins:Anions:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:Protein fate:Energy metabolism:Heme, porphyrin, and cobalamin:Anions:Protein and peptide secretion and trafficking:TCA cycle:Pyruvate dehydrogenase:ATP-proton motive force interconversion:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Global:Metabolism:Signal Transduction:Membrane Transport:Environmental Information Processing" 125 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Aspartate oxidase:Nicotinate-nucleotide pyrophosphorylase:Nicotinate-nucleotide pyrophosphorylase:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Aspartate/tyrosine/aromatic aminotransferase:Aspartate/tyrosine/aromatic aminotransferase:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Phytoene/squalene synthetase:Phytoene/squalene synthetase:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:Amino acid transport and metabolism:Amino acid transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:beta-carotene 15,15'-monooxygenase activity:L-aspartate:2-oxoglutarate aminotransferase activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:ion channel activity:ATP binding:electron transport:DNA repair:DNA recombination:regulation of transcription, DNA-dependent:ion transport:N-acetyltransferase activity:metabolic process:L-aspartate oxidase activity:nitrate reductase activity:electron carrier activity:biosynthetic process:four-way junction helicase activity:NAD biosynthetic process:cellular response to phosphate starvation:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:transferase activity, transferring nitrogenous groups:1-aminocyclopropane-1-carboxylate synthase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:pyridoxal phosphate binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadC:nadC:sensory_box:sensory_box:CDC48:CDC48:blh_monoox:blh_monoox:Poorly characterized:Poorly characterized:Metabolism of Terpenoids and Polyketides:Cellular processes and signaling:Biosynthesis of cofactors, prosthetic groups, and carriers:Regulatory functions:Pyridine nucleotides:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Amino Acid Metabolism:Metabolism:Regulatory functions:Small molecule interactions:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Cellular processes and signaling:Metabolism" 126 "Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:DNA binding:transcription repressor activity:negative regulation of transcription, DNA-dependent:response to arsenic-containing substance:Function unknown:Function unknown:Poorly characterized:Poorly characterized" 127 "Predicted epimerase, PhzC/PhzF homolog:Predicted epimerase, PhzC/PhzF homolog:ABC-type Fe3+-siderophore transport system, permease component:ABC-type Fe3+-siderophore transport system, permease component:Transposase and inactivated derivatives:Transposase and inactivated derivatives:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:catalytic activity:aminoacyl-tRNA ligase activity:transporter activity:ATP binding:tRNA aminoacylation for protein translation:transport:biosynthetic process:iron-chelate-transporting ATPase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:ABC transporters:General function prediction only:General function prediction only:PhzF_family:PhzF_family:tspaseT_teng_C:tspaseT_teng_C:Information storage and processing:Metabolism:Poorly characterized:Environmental Information Processing:Membrane Transport:Transposon functions:Toxin production and resistance:Cellular processes:Mobile and extrachromosomal element functions:Information storage and processing:Metabolism:Poorly characterized:Environmental Information Processing:Membrane Transport:Cellular processes:Toxin production and resistance:Mobile and extrachromosomal element functions:Transposon functions" 128 "4-aminobutyrate aminotransferase and related aminotransferases:4-aminobutyrate aminotransferase and related aminotransferases:TATA-box binding protein (TBP), component of TFIID and TFIIIB:TATA-box binding protein (TBP), component of TFIID and TFIIIB:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Uncharacterized small protein:Uncharacterized small protein:FOG: Transposase and inactivated derivatives:FOG: Transposase and inactivated derivatives:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleic acid binding:DNA binding:RNA polymerase II transcription factor activity:4-aminobutyrate transaminase activity:transposase activity:structural molecule activity:sugar binding:transposition, DNA-mediated:regulation of transcription, DNA-dependent:transcription initiation from RNA polymerase II promoter:hydrolase activity:pyridoxal phosphate binding:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:beta-Alanine metabolism:beta-Alanine metabolism:Propanoate metabolism:Propanoate metabolism:Butanoate metabolism:Butanoate metabolism:Metabolic pathways:Metabolic pathways:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:Function unknown:Function unknown:Information storage and processing:Metabolism:Poorly characterized:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Genetic Information Processing:Global:Transcription:Metabolism of Other Amino Acids:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Transcription:Global:Metabolism" 129 "Mismatch repair ATPase (MutS family):Mismatch repair ATPase (MutS family):Hydrogenase maturation factor:Hydrogenase maturation factor:Queuine/archaeosine tRNA-ribosyltransferase:Queuine/archaeosine tRNA-ribosyltransferase:Predicted TIM-barrel enzyme:Predicted TIM-barrel enzyme:Sugar kinases, ribokinase family:Sugar kinases, ribokinase family:Deoxycytidine deaminase:Deoxycytidine deaminase:Queuine tRNA-ribosyltransferases, contain PUA domain:Queuine tRNA-ribosyltransferases, contain PUA domain:Predicted membrane protein:Predicted membrane protein:Choline dehydrogenase and related flavoproteins:Choline dehydrogenase and related flavoproteins:Predicted phosphohydrolase (DHH superfamily):Predicted phosphohydrolase (DHH superfamily):Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:damaged DNA binding:RNA binding:catalytic activity:dUTP diphosphatase activity:transporter activity:ATP binding:mismatch repair:transport:metabolic process:queuine tRNA-ribosyltransferase activity:queuosine biosynthetic process:carotenoid biosynthetic process:oxidoreductase activity, acting on CH-OH group of donors:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen:mismatched DNA binding:dUTP metabolic process:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:Mismatch repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:thylakoid_BtpA:thylakoid_BtpA:tgt_general:tgt_general:unchar_dom_2:unchar_dom_2:mutS1:mutS1:Metabolism:Poorly characterized:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:DNA metabolism:Nucleotide Metabolism:Protein synthesis:Protein fate:Protein folding and stabilization:tRNA and rRNA base modification:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein folding and stabilization:Information storage and processing:Cellular processes and signaling" 130 "Acetyltransferase (isoleucine patch superfamily):Acetyltransferase (isoleucine patch superfamily):Queuine/archaeosine tRNA-ribosyltransferase:Queuine/archaeosine tRNA-ribosyltransferase:Na+-driven multidrug efflux pump:Na+-driven multidrug efflux pump:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted RNA-binding protein homologous to eukaryotic snRNP:Predicted RNA-binding protein homologous to eukaryotic snRNP:Queuine tRNA-ribosyltransferases, contain PUA domain:Queuine tRNA-ribosyltransferases, contain PUA domain:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Predicted metal-binding protein:Predicted metal-binding protein:nucleic acid binding:RNA binding:pseudouridylate synthase activity:drug transmembrane transport:queuine tRNA-ribosyltransferase activity:queuosine biosynthetic process:pseudouridine synthase activity:drug transmembrane transporter activity:antiporter activity:transferase activity:transferase activity, transferring acyl groups:tRNA pseudouridine synthesis:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:General function prediction only:General function prediction only:Function unknown:Function unknown:tRNA_TruD_broad:tRNA_TruD_broad:tgt_general:tgt_general:unchar_dom_2:unchar_dom_2:matE:matE:Defense mechanisms:Defense mechanisms:Other:Transport and binding proteins:Information storage and processing:Cellular processes and signaling:Poorly characterized:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Protein synthesis:Information storage and processing:Cellular processes and signaling:Poorly characterized:Other:tRNA and rRNA base modification" 131 "Undecaprenyl pyrophosphate synthase:Undecaprenyl pyrophosphate synthase:Prephenate dehydrogenase:Prephenate dehydrogenase:Protoporphyrinogen oxidase:Protoporphyrinogen oxidase:Predicted exosome subunit:Predicted exosome subunit:Transcriptional regulators:Transcriptional regulators:Amino acid transport and metabolism:Amino acid transport and metabolism:sequence-specific DNA binding transcription factor activity:prephenate dehydrogenase (NADP+) activity:oxygen-dependent protoporphyrinogen oxidase activity:electron transport:regulation of transcription, DNA-dependent:tyrosine biosynthetic process:metabolic process:di-trans,poly-cis-decaprenylcistransferase activity:prephenate dehydrogenase activity:sequence-specific DNA binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:uppS:uppS:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Metabolism:Metabolism:Global:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Cell envelope:Information storage and processing:Metabolism:Metabolism:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Global:Metabolism:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Metabolism" 132 "Queuine/archaeosine tRNA-ribosyltransferase:Queuine/archaeosine tRNA-ribosyltransferase:Signal transduction histidine kinase:Signal transduction histidine kinase:ADP-ribose pyrophosphatase:ADP-ribose pyrophosphatase:Queuine tRNA-ribosyltransferases, contain PUA domain:Queuine tRNA-ribosyltransferases, contain PUA domain:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Predicted RNA-binding protein, contains TRAM domain:Predicted RNA-binding protein, contains TRAM domain:Nucleotide transport and metabolism:Nucleotide transport and metabolism:RNA binding:protein histidine kinase activity:signal transducer activity:ATP binding:signal transduction:queuine tRNA-ribosyltransferase activity:queuosine biosynthetic process:hydrolase activity:peptidyl-histidine phosphorylation:ADP-ribose diphosphatase activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Purine metabolism:Purine metabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:tgt_general:tgt_general:unchar_dom_2:unchar_dom_2:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Protein synthesis:tRNA and rRNA base modification:Metabolism:Nucleotide Metabolism:Metabolism:Nucleotide Metabolism:Poorly characterized:Protein synthesis:tRNA and rRNA base modification:Information storage and processing" 133 "Queuine/archaeosine tRNA-ribosyltransferase:Queuine/archaeosine tRNA-ribosyltransferase:ABC-type Fe3+-siderophore transport system, permease component:ABC-type Fe3+-siderophore transport system, permease component:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Membrane protein involved in the export of O-antigen and teichoic acid:Membrane protein involved in the export of O-antigen and teichoic acid:polysaccharide biosynthetic process:transporter activity:ATP binding:transport:drug transmembrane transport:zinc ion binding:queuine tRNA-ribosyltransferase activity:queuosine biosynthetic process:drug transmembrane transporter activity:antiporter activity:iron-chelate-transporting ATPase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:tgt_general:tgt_general:Information storage and processing:Metabolism:Poorly characterized:Poorly characterized:Membrane Transport:Information storage and processing:Protein synthesis:tRNA and rRNA base modification:Environmental Information Processing:Membrane Transport:Metabolism:Environmental Information Processing:Protein synthesis:tRNA and rRNA base modification" 134 "Predicted hydrolases of HD superfamily:Predicted hydrolases of HD superfamily:catalytic activity:General function prediction only:General function prediction only:Poorly characterized:Poorly characterized" 135 "Energy production and conversion:Energy production and conversion:Na+/H+ antiporter:Na+/H+ antiporter:Uncharacterized conserved protein:Uncharacterized conserved protein:carboxypeptidase activity:aminoacyl-tRNA ligase activity:ATP binding:tRNA aminoacylation for protein translation:sodium ion transport:regulation of pH:sodium:hydrogen antiporter activity:Function unknown:Function unknown:Metabolism:Poorly characterized:Poorly characterized:Metabolism" 136 "Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain:Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain:Translation initiation factor 1 (IF-1):Translation initiation factor 1 (IF-1):Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component:Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component:Rhodanese-related sulfurtransferase:Rhodanese-related sulfurtransferase:Nucleotide transport and metabolism:Nucleotide transport and metabolism:RNA binding:translation initiation factor activity:phosphoribosylformylglycinamidine synthase activity:thiosulfate sulfurtransferase activity:'de novo' IMP biosynthetic process:translational initiation:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Purine metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Sulfur relay system:Sulfur relay system:TIGR00302:TIGR00302:FGAM_synth_I:FGAM_synth_I:Amino Acid Metabolism:Folding Sorting and Degradation:Genetic Information Processing:Folding Sorting and Degradation:Global:Purine ribonucleotide biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Information storage and processing:Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Global:Genetic Information Processing:Metabolism:Information storage and processing:Metabolism:Metabolism:Nucleotide Metabolism:Metabolism" 137 "Ribosomal protein S12:Ribosomal protein S12:Ribosomal protein S7:Ribosomal protein S7:Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L14:Ribosomal protein L14:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein L24:Ribosomal protein L24:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Lactoylglutathione lyase and related lyases:Lactoylglutathione lyase and related lyases:Glutamyl-tRNA reductase:Glutamyl-tRNA reductase:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Translation initiation factor 2, alpha subunit (eIF-2alpha):Translation initiation factor 2, alpha subunit (eIF-2alpha):Predicted GTPase:Predicted GTPase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein S24E:Ribosomal protein S24E:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L21E:Ribosomal protein L21E:Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleotide binding:DNA binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:shikimate 3-dehydrogenase (NADP+) activity:GTP binding:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:glutamyl-tRNA reductase activity:ferrous iron transmembrane transporter activity:ferrous iron transport:rRNA binding:tetrapyrrole biosynthetic process:ribosome biogenesis:protein dimerization activity:NADP binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Pyruvate metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Two-component system:Two-component system:Ribosome:Ribosome:RNA polymerase:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:small_GTP:small_GTP:S23_S12_E_A:S23_S12_E_A:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:S7_S5_E_A:S7_S5_E_A:hemA:hemA:L22_arch:L22_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:L3_arch:L3_arch:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:rpl14p_arch:rpl14p_arch:L21P_arch:L21P_arch:Poorly characterized:Heme, porphyrin, and cobalamin:General:Ribosomal proteins: synthesis and modification:Global:Metabolism:Information storage and processing:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Translation:Transcription:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Carbohydrate Metabolism:Heme, porphyrin, and cobalamin:Biosynthesis of cofactors, prosthetic groups, and carriers:General:Unknown function:Ribosomal proteins: synthesis and modification:Protein synthesis:Metabolism:Global:Signal Transduction:Environmental Information Processing:Translation:Transcription:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Protein synthesis:Unknown function:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers" 138 "Spermidine/putrescine-binding periplasmic protein:Spermidine/putrescine-binding periplasmic protein:Amino acid transport and metabolism:Amino acid transport and metabolism:ABC transporters:ABC transporters:Environmental Information Processing:Membrane Transport:Membrane Transport:Metabolism:Environmental Information Processing:Metabolism" 139 "tRNA and rRNA cytosine-C5-methylases:tRNA and rRNA cytosine-C5-methylases:Predicted divalent heavy-metal cations transporter:Predicted divalent heavy-metal cations transporter:RecA-superfamily ATPases implicated in signal transduction:RecA-superfamily ATPases implicated in signal transduction:Eukaryotic-type DNA primase, catalytic (small) subunit:Eukaryotic-type DNA primase, catalytic (small) subunit:Transcriptional regulators:Transcriptional regulators:Permease, similar to cation transporters:Permease, similar to cation transporters:Zn-dependent proteases:Zn-dependent proteases:Predicted NAD/FAD-dependent oxidoreductase:Predicted NAD/FAD-dependent oxidoreductase:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Uncharacterized conserved protein:Uncharacterized conserved protein:sequence-specific DNA binding transcription factor activity:DNA primase activity:metalloendopeptidase activity:DNA replication, synthesis of RNA primer:regulation of transcription, DNA-dependent:proteolysis:cation transport:cation transmembrane transporter activity:oxidoreductase activity:metal ion transport:sequence-specific DNA binding:metal ion transmembrane transporter activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:primase_sml:primase_sml:DNA replication, recombination, and repair:Cellular processes and signaling:Metabolism:Poorly characterized:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:DNA metabolism:Information storage and processing" 140 "Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Cobalamin-5-phosphate synthase:Cobalamin-5-phosphate synthase:Dienelactone hydrolase and related enzymes:Dienelactone hydrolase and related enzymes:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):ATPase involved in DNA replication:ATPase involved in DNA replication:Predicted PP-loop superfamily ATPase:Predicted PP-loop superfamily ATPase:Phosphatidylserine decarboxylase:Phosphatidylserine decarboxylase:Predicted hydrolase (HAD superfamily):Predicted hydrolase (HAD superfamily):Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B:Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B:Uncharacterized conserved protein:Uncharacterized conserved protein:GTP:adenosylcobinamide-phosphate guanylyltransferase:GTP:adenosylcobinamide-phosphate guanylyltransferase:Predicted membrane-bound mannosyltransferase:Predicted membrane-bound mannosyltransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleic acid binding:DNA-directed DNA polymerase activity:histidinol-phosphate transaminase activity:hydroxymethylbilane synthase activity:phosphatidylserine decarboxylase activity:tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity:ATP binding:carbohydrate metabolic process:DNA replication:protein folding:tRNA processing:N-acetyltransferase activity:metabolic process:isoprenoid biosynthetic process:3'-5' exonuclease activity:phospholipid biosynthetic process:cobalamin 5'-phosphate synthase activity:phosphoglycolate phosphatase activity:xylose isomerase activity:cobalamin biosynthetic process:transferase activity, transferring nitrogenous groups:nucleoside-triphosphatase activity:pyridoxal phosphate binding:tetrapyrrole biosynthetic process:adenosylcobinamide hydrolase activity:threonine-phosphate decarboxylase activity:adenosylcobinamide-GDP ribazoletransferase activity:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Histidine metabolism:Histidine metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:hemC:hemC:TIGR00364:TIGR00364:L_thr_O3P_dcar:L_thr_O3P_dcar:HAD-SF-IA-v1:HAD-SF-IA-v1:thermosome_arch:thermosome_arch:TIGR03663:TIGR03663:Protein folding and stabilization:Unknown function:Enzymes of unknown specificity:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Heme, porphyrin, and cobalamin:General:Enzymes of unknown specificity:Protein folding and stabilization:Global:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Lipid Metabolism:Nucleotide Metabolism:Metabolism:Amino Acid Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Metabolism of Cofactors and Vitamins:Biosynthesis of Other Secondary Metabolites:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Protein fate" 141 "RecA-superfamily ATPases implicated in signal transduction:RecA-superfamily ATPases implicated in signal transduction:Predicted transcriptional regulators:Predicted transcriptional regulators:Uncharacterized conserved protein:Uncharacterized conserved protein:structural molecule activity:ATP binding:gas vesicle organization:Transcription:Transcription:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:Information storage and processing:Poorly characterized:Cellular processes and signaling:Information storage and processing:Cellular processes and signaling:Poorly characterized" 142 "Predicted amidohydrolase:Predicted amidohydrolase:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:nucleotide binding:ATP binding:nitrogen compound metabolic process:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds:ATPase activity:nucleoside-triphosphatase activity:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:TIGR02928:TIGR02928:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling:Poorly characterized:Poorly characterized:Cellular processes and signaling:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair" 143 "DNA polymerase elongation subunit (family B):DNA polymerase elongation subunit (family B):Phosphatidylserine decarboxylase:Phosphatidylserine decarboxylase:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Predicted integral membrane protein:Predicted integral membrane protein:nucleotide binding:DNA binding:DNA-directed DNA polymerase activity:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity:phosphatidylserine decarboxylase activity:DNA replication:metabolic process:phospholipid biosynthetic process:oxidoreductase activity:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Metabolic pathways:Metabolic pathways:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Global:Metabolism:Information storage and processing:Metabolism:Poorly characterized:Global:Metabolism:Metabolism:Nucleotide Metabolism:Poorly characterized:Lipid Metabolism:Metabolism:Lipid Metabolism:Metabolism:Nucleotide Metabolism:Information storage and processing" 144 "Choline-glycine betaine transporter:Choline-glycine betaine transporter:transporter activity:transport:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cellular processes and signaling:Cellular processes and signaling" 145 "Energy production and conversion:Energy production and conversion:Fe-S oxidoreductases:Fe-S oxidoreductases:HD superfamily phosphohydrolases:HD superfamily phosphohydrolases:ABC-type cobalt transport system, ATPase component:ABC-type cobalt transport system, ATPase component:Transcriptional regulator:Transcriptional regulator:Predicted hydrolase (metallo-beta-lactamase superfamily):Predicted hydrolase (metallo-beta-lactamase superfamily):DNA binding:catalytic activity:ATP binding:regulation of transcription, DNA-dependent:cobalt ion transport:hydrolase activity:ATPase activity:iron-sulfur cluster binding:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:ABC transporters:General function prediction only:General function prediction only:cbiO:cbiO:rSAM_TYW1:rSAM_TYW1:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Metabolism:Poorly characterized:Protein synthesis:Cations and iron carrying compounds:tRNA and rRNA base modification:Environmental Information Processing:Membrane Transport:Transport and binding proteins:Information storage and processing:Metabolism:Poorly characterized:Environmental Information Processing:Membrane Transport:Protein synthesis:tRNA and rRNA base modification" 146 "Chloride channel protein EriC:Chloride channel protein EriC:ATPases of the AAA+ class:ATPases of the AAA+ class:catalytic activity:voltage-gated chloride channel activity:ATP binding:DNA repair:DNA recombination:chloride transport:metabolic process:four-way junction helicase activity:nucleoside-triphosphatase activity:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Cellular processes and signaling:Metabolism:Cellular processes and signaling:Metabolism" 147 "Spermidine/putrescine-binding periplasmic protein:Spermidine/putrescine-binding periplasmic protein:Predicted membrane protein:Predicted membrane protein:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:nuclease activity:transposition, DNA-mediated:Replication, recombination and repair:Replication, recombination and repair:ABC transporters:ABC transporters:Function unknown:Function unknown:crt_membr_arch:crt_membr_arch:Metabolism:Poorly characterized:Information storage and processing:Environmental Information Processing:Membrane Transport:Poorly characterized:Metabolism:Environmental Information Processing:Membrane Transport:Information storage and processing" 148 "Predicted transcriptional regulators:Predicted transcriptional regulators:structural molecule activity:gas vesicle organization:Transcription:Transcription:Information storage and processing:Information storage and processing" 149 "Uncharacterized homolog of PrgY (pheromone shutdown protein):Uncharacterized homolog of PrgY (pheromone shutdown protein):Function unknown:Function unknown:Poorly characterized:Poorly characterized" 150 "Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L10:Ribosomal protein L10:Lactoylglutathione lyase and related lyases:Lactoylglutathione lyase and related lyases:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Predicted GTPase:Predicted GTPase:Predicted transcriptional regulators:Predicted transcriptional regulators:Uncharacterized conserved protein:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:structural constituent of ribosome:GTP binding:translation:translational elongation:ferrous iron transmembrane transporter activity:ferrous iron transport:ribosome biogenesis:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Pyruvate metabolism:Pyruvate metabolism:Ribosome:Ribosome:General function prediction only:General function prediction only:Function unknown:Function unknown:small_GTP:small_GTP:tspaseT_teng_C:tspaseT_teng_C:L21P_arch:L21P_arch:Unknown function:General:Information storage and processing:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism:Information storage and processing:Unknown function:Mobile and extrachromosomal element functions:General:Transposon functions:Genetic Information Processing:Metabolism:Translation:Carbohydrate Metabolism:Poorly characterized:Genetic Information Processing:Translation:Metabolism:Mobile and extrachromosomal element functions:Transposon functions" 151 "Energy production and conversion:Energy production and conversion:tRNA-dihydrouridine synthase:tRNA-dihydrouridine synthase:Histidinol dehydrogenase:Histidinol dehydrogenase:Serine/threonine protein kinase:Serine/threonine protein kinase:3-dehydroquinate dehydratase:3-dehydroquinate dehydratase:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:Uncharacterized Fe-S oxidoreductase:Uncharacterized Fe-S oxidoreductase:Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:ABC-type antimicrobial peptide transport system, ATPase component:ABC-type antimicrobial peptide transport system, ATPase component:Predicted transcriptional regulators:Predicted transcriptional regulators:Transcriptional regulators:Transcriptional regulators:Molybdopterin converting factor, small subunit:Molybdopterin converting factor, small subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:histidine biosynthetic process:DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:3-dehydroquinate dehydratase activity:histidinol dehydrogenase activity:protein serine/threonine kinase activity:ATP binding:regulation of transcription, DNA-dependent:protein phosphorylation:Mo-molybdopterin cofactor biosynthetic process:sulfur compound metabolic process:tRNA processing:metabolic process:zinc ion binding:aromatic amino acid family biosynthetic process:nucleotide catabolic process:oxidoreductase activity:hydrolase activity:ATPase activity:sequence-specific DNA binding:flavin adenine dinucleotide binding:NAD binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Histidine metabolism:Histidine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Sulfur relay system:Sulfur relay system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:hisD:hisD:molyb_syn:molyb_syn:moaD_arch:moaD_arch:Defense mechanisms:Defense mechanisms:Metabolism:Amino Acid Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Molybdopterin:Histidine family:Global:Genetic Information Processing:Folding Sorting and Degradation:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Global:Metabolism:Amino acid biosynthesis:Histidine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism" 152 "Glutamate decarboxylase and related PLP-dependent proteins:Glutamate decarboxylase and related PLP-dependent proteins:Thioredoxin reductase:Thioredoxin reductase:ABC-type Fe3+-hydroxamate transport system, periplasmic component:ABC-type Fe3+-hydroxamate transport system, periplasmic component:Siderophore synthetase component:Siderophore synthetase component:Amino acid transport and metabolism:Amino acid transport and metabolism:iron ion transmembrane transporter activity:electron transport:cellular amino acid metabolic process:high-affinity iron ion transport:siderophore transmembrane transporter activity:oxidoreductase activity:carboxy-lyase activity:siderophore biosynthetic process:carboxylic acid metabolic process:pyridoxal phosphate binding:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:Environmental Information Processing:Membrane Transport:Metabolism:Global:Metabolism:Cellular processes and signaling:Cellular processes and signaling:Metabolism:Membrane Transport:Metabolism:Amino Acid Metabolism:Global:Environmental Information Processing:Amino Acid Metabolism:Metabolism:Metabolism" 153 "Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:Predicted transporter component:Predicted transporter component:polygalacturonase activity:carbohydrate metabolic process:hydrolase activity:General function prediction only:General function prediction only:Poorly characterized:Poorly characterized" 154 "3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:Glutamate dehydrogenase/leucine dehydrogenase:Glutamate dehydrogenase/leucine dehydrogenase:ABC-type Fe3+-hydroxamate transport system, periplasmic component:ABC-type Fe3+-hydroxamate transport system, periplasmic component:Small-conductance mechanosensitive channel:Small-conductance mechanosensitive channel:Lysyl-tRNA synthetase (class I):Lysyl-tRNA synthetase (class I):Methylase of polypeptide chain release factors:Methylase of polypeptide chain release factors:FOG: Transposase and inactivated derivatives:FOG: Transposase and inactivated derivatives:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleic acid binding:DNA binding:DNA-(apurinic or apyrimidinic site) lyase activity:glutamate dehydrogenase [NAD(P)+] activity:transposase activity:lysine-tRNA ligase activity:iron ion transmembrane transporter activity:ATP binding:base-excision repair:transposition, DNA-mediated:lysyl-tRNA aminoacylation:cellular amino acid metabolic process:high-affinity iron ion transport:methyltransferase activity:methylation:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Nitrogen metabolism:Nitrogen metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Base excision repair:Base excision repair:lysS_arch:lysS_arch:hemK_rel_arch:hemK_rel_arch:Protein synthesis:tRNA aminoacylation:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism:Metabolism:Genetic Information Processing:Global:tRNA aminoacylation:Enzymes of unknown specificity:Protein synthesis:Unknown function:Replication and Repair:Translation:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Energy Metabolism:Amino Acid Metabolism:Genetic Information Processing:Translation:Replication and Repair:Global:Metabolism" 155 "Spermidine/putrescine-binding periplasmic protein:Spermidine/putrescine-binding periplasmic protein:ABC-type spermidine/putrescine transport system, permease component I:ABC-type spermidine/putrescine transport system, permease component I:ABC-type spermidine/putrescine transport systems, ATPase components:ABC-type spermidine/putrescine transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:transporter activity:ATP binding:transport:putrescine-importing ATPase activity:spermidine-importing ATPase activity:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances:ABC transporters:ABC transporters:Membrane Transport:Metabolism:Environmental Information Processing:Metabolism:Environmental Information Processing:Membrane Transport" 156 "ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:Transcriptional regulators:Transcriptional regulators:Uncharacterized conserved protein:Uncharacterized conserved protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:sequence-specific DNA binding transcription factor activity:regulation of transcription, DNA-dependent:cobalamin biosynthetic process:gas vesicle organization:cobyrinic acid a,c-diamide synthase activity:sequence-specific DNA binding:Transcription:Transcription:Function unknown:Function unknown:TIGR00296:TIGR00296:General:Information storage and processing:Cellular processes and signaling:Poorly characterized:Unknown function:Poorly characterized:Cellular processes and signaling:Information storage and processing:Unknown function:General" 157 "Spermidine/putrescine-binding periplasmic protein:Spermidine/putrescine-binding periplasmic protein:ABC-type spermidine/putrescine transport system, permease component I:ABC-type spermidine/putrescine transport system, permease component I:ABC-type spermidine/putrescine transport system, permease component II:ABC-type spermidine/putrescine transport system, permease component II:ABC-type spermidine/putrescine transport systems, ATPase components:ABC-type spermidine/putrescine transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:transporter activity:ATP binding:transport:putrescine-importing ATPase activity:spermidine-importing ATPase activity:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances:ABC transporters:ABC transporters:Metabolism:Membrane Transport:Environmental Information Processing:Metabolism:Environmental Information Processing:Membrane Transport" 158 "Methylated DNA-protein cysteine methyltransferase:Methylated DNA-protein cysteine methyltransferase:Predicted exonuclease of the beta-lactamase fold involved in RNA processing:Predicted exonuclease of the beta-lactamase fold involved in RNA processing:FOG: Transposase and inactivated derivatives:FOG: Transposase and inactivated derivatives:DNA binding:catalytic activity:methylated-DNA-[protein]-cysteine S-methyltransferase activity:transposase activity:calcium ion binding:DNA repair:DNA recombination:transposition, DNA-mediated:DNA integration:hydrolase activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Information storage and processing:Information storage and processing" 159 "Predicted transcriptional regulator:Predicted transcriptional regulator:Transcription:Transcription:Information storage and processing:Information storage and processing" 160 "Ribonuclease HII:Ribonuclease HII:Biotin-(acetyl-CoA carboxylase) ligase:Biotin-(acetyl-CoA carboxylase) ligase:Predicted integral membrane protein:Predicted integral membrane protein:Type II restriction enzyme, methylase subunits:Type II restriction enzyme, methylase subunits:Predicted exosome subunit:Predicted exosome subunit:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Predicted Zn-dependent hydrolases of the beta-lactamase fold:nucleic acid binding:RNA binding:biotin-[acetyl-CoA-carboxylase] ligase activity:ribonuclease H activity:DNA modification:protein modification process:methyltransferase activity:RNA metabolic process:methylation:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:DNA replication:DNA replication:General function prediction only:General function prediction only:Function unknown:Function unknown:birA_ligase:birA_ligase:TIGR00374:TIGR00374:TIGR00729:TIGR00729:Defense mechanisms:Defense mechanisms:Metabolism:Poorly characterized:DNA replication, recombination, and repair:Genetic Information Processing:Replication and Repair:Conserved:Protein modification and repair:DNA metabolism:Protein fate:Hypothetical proteins:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Genetic Information Processing:Replication and Repair:DNA metabolism:DNA replication, recombination, and repair:Protein fate:Protein modification and repair:Hypothetical proteins:Conserved:Information storage and processing:Cellular processes and signaling" 161 "Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein S9:Ribosomal protein S9:Enolase:Enolase:Ribosomal protein S15P/S13E:Ribosomal protein S15P/S13E:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Lactoylglutathione lyase and related lyases:Lactoylglutathione lyase and related lyases:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Predicted GTPase:Predicted GTPase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Ribosomal protein L44E:Ribosomal protein L44E:Ribosomal protein L15E:Ribosomal protein L15E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L37E:Ribosomal protein L37E:Ribosomal protein L21E:Ribosomal protein L21E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleotide binding:DNA binding:RNA binding:structural constituent of ribosome:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:phosphopyruvate hydratase activity:GTP binding:glycolysis:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:ferrous iron transmembrane transporter activity:ferrous iron transport:rRNA binding:ribosome biogenesis:protein dimerization activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Pyruvate metabolism:Methane metabolism:Methane metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Ribosome:Ribosome:RNA degradation:RNA degradation:RNA polymerase:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:small_GTP:small_GTP:rpsD_arch:rpsD_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:arch_S9P:arch_S9P:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:rpl4p_arch:rpl4p_arch:L21P_arch:L21P_arch:Unknown function:General:Information storage and processing:Metabolism:Poorly characterized:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Ribosomal proteins: synthesis and modification:Protein synthesis:Folding Sorting and Degradation:Translation:Transcription:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Unknown function:Metabolism:Global:Signal Transduction:Environmental Information Processing:Folding Sorting and Degradation:Translation:Transcription:Genetic Information Processing:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Environmental Information Processing:Global:Ribosomal proteins: synthesis and modification:General:Protein synthesis" 162 "3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:Na+/proline symporter:Na+/proline symporter:Transcriptional regulators:Transcriptional regulators:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleic acid binding:DNA binding:sequence-specific DNA binding transcription factor activity:DNA-(apurinic or apyrimidinic site) lyase activity:transporter activity:base-excision repair:regulation of transcription, DNA-dependent:transport:methyltransferase activity:hydrolase activity:methylation:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Base excision repair:Base excision repair:General function prediction only:General function prediction only:sss:sss:Transport and binding proteins:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Metabolism:Poorly characterized:Genetic Information Processing:Poorly characterized:Cations and iron carrying compounds:Metabolism:Genetic Information Processing:Replication and Repair:Information storage and processing:Replication and Repair" 163 "Glutamine synthetase:Glutamine synthetase:ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:ABC-type Co2+ transport system, permease component:ABC-type Co2+ transport system, permease component:ABC-type sugar transport system, permease component:ABC-type sugar transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type cobalt transport system, permease component CbiQ and related transporters:ABC-type cobalt transport system, permease component CbiQ and related transporters:Phosphate uptake regulator:Phosphate uptake regulator:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type sugar transport systems, permease components:ABC-type sugar transport systems, permease components:Mn-dependent transcriptional regulator:Mn-dependent transcriptional regulator:ABC-type sugar transport system, periplasmic component:ABC-type sugar transport system, periplasmic component:Alkaline phosphatase:Alkaline phosphatase:Zn-dependent carboxypeptidase:Zn-dependent carboxypeptidase:ABC-type sugar transport systems, ATPase components:ABC-type sugar transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:sequence-specific DNA binding transcription factor activity:alkaline phosphatase activity:metallocarboxypeptidase activity:glutamate-ammonia ligase activity:transporter activity:inorganic phosphate transmembrane transporter activity:binding:iron ion binding:ATP binding:regulation of transcription, DNA-dependent:proteolysis:glutamine biosynthetic process:transport:phosphate ion transport:cobalt ion transport:metabolic process:cobalamin biosynthetic process:nitrogen fixation:cobalt ion transmembrane transporter activity:peptide transporter activity:phosphate ion transmembrane-transporting ATPase activity:peptide transport:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances:ATPase activity:ATPase activity, coupled to transmembrane movement of substances:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Aminobenzoate degradation:Aminobenzoate degradation:Folate biosynthesis:Folate biosynthesis:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:cbiM:cbiM:GlnA:GlnA:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:oligo_HPY:oligo_HPY:phoU_full:phoU_full:ptsS_2:ptsS_2:phosphate_pstC:phosphate_pstC:CbiQ_TIGR:CbiQ_TIGR:Membrane Transport:Environmental Information Processing:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Transport and binding proteins:Amino acids, peptides and amines:Anions:Cations and iron carrying compounds:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Transport and binding proteins:Energy Metabolism:Heme, porphyrin, and cobalamin:Glutamate family:Cations and iron carrying compounds:Anions:Amino acids, peptides and amines:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Global:Metabolism:Signal Transduction" 164 "Glycosyltransferase:Glycosyltransferase:Nucleoside-diphosphate-sugar epimerases:Nucleoside-diphosphate-sugar epimerases:dTDP-glucose pyrophosphorylase:dTDP-glucose pyrophosphorylase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:UDP-glucose 4-epimerase activity:carbohydrate metabolic process:glucose-1-phosphate thymidylyltransferase activity:biosynthetic process:oxidoreductase activity:racemase and epimerase activity, acting on carbohydrates and derivatives:cellular metabolic process:coenzyme binding:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Galactose metabolism:Galactose metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Streptomycin biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Metabolism:Carbohydrate Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism:Metabolism:Global:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Biosynthesis of Other Secondary Metabolites:Global:Metabolism:Cellular processes and signaling" 165 "Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L2:Ribosomal protein L2:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein L24:Ribosomal protein L24:Ribosomal protein L10:Ribosomal protein L10:Lactoylglutathione lyase and related lyases:Lactoylglutathione lyase and related lyases:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L37E:Ribosomal protein L37E:Ribosomal protein L21E:Ribosomal protein L21E:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleotide binding:nucleic acid binding:DNA binding:RNA binding:structural constituent of ribosome:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:rRNA binding:ribosome biogenesis:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Pyruvate metabolism:Metabolic pathways:Metabolic pathways:Two-component system:Two-component system:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Function unknown:Function unknown:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:rplX_A_E:rplX_A_E:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:L21P_arch:L21P_arch:Information storage and processing:Metabolism:Poorly characterized:Ribosomal proteins: synthesis and modification:Global:Environmental Information Processing:Ribosomal proteins: synthesis and modification:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Translation:Transcription:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Protein synthesis:Metabolism:Global:Signal Transduction:Environmental Information Processing:Translation:Transcription:Genetic Information Processing:Protein synthesis:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Information storage and processing" 166 "Long-chain acyl-CoA synthetases (AMP-forming):Long-chain acyl-CoA synthetases (AMP-forming):Predicted transcriptional regulator:Predicted transcriptional regulator:Predicted DNA-binding protein containing a Zn-ribbon domain:Predicted DNA-binding protein containing a Zn-ribbon domain:nucleic acid binding:long-chain fatty acid-CoA ligase activity:metabolic process:short-chain fatty acid-CoA ligase activity:medium-chain fatty acid-CoA ligase activity:very long-chain fatty acid-CoA ligase activity:sequence-specific DNA binding:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Fatty acid metabolism:Fatty acid metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:Lipid Metabolism:Global:Metabolism:Information storage and processing:Metabolism:Poorly characterized:Global:Metabolism:Metabolism:Lipid Metabolism:Information storage and processing:Metabolism:Poorly characterized:Metabolism" 167 "Predicted transcriptional regulator:Predicted transcriptional regulator:Predicted DNA-binding protein containing a Zn-ribbon domain:Predicted DNA-binding protein containing a Zn-ribbon domain:nucleic acid binding:sequence-specific DNA binding:Transcription:Transcription:General function prediction only:General function prediction only:Information storage and processing:Information storage and processing:Poorly characterized:Poorly characterized" 168 "DNA binding" 169 "Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:Predicted transcriptional regulator:Predicted transcriptional regulator:Predicted DNA-binding protein containing a Zn-ribbon domain:Predicted DNA-binding protein containing a Zn-ribbon domain:Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta):Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta):nucleic acid binding:catalytic activity:propionyl-CoA carboxylase activity:sequence-specific DNA binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Glyoxylate and dicarboxylate metabolism:Glyoxylate and dicarboxylate metabolism:Propanoate metabolism:Propanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Poorly characterized:Amino Acid Metabolism:Metabolism:Global:Metabolism:Information storage and processing:Carbohydrate Metabolism:Information storage and processing:Metabolism:Poorly characterized:Global:Metabolism:Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism" 170 "Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Membrane protein implicated in regulation of membrane protease activity:Membrane protein implicated in regulation of membrane protease activity:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:DNA-binding protein:DNA-binding protein:Predicted RNA-binding protein, contains TRAM domain:Predicted RNA-binding protein, contains TRAM domain:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:DNA binding:asparagine synthase (glutamine-hydrolyzing) activity:asparagine biosynthetic process:cellular aromatic compound metabolic process:hydrolase activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:Function unknown:Function unknown:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Cellular processes and signaling:Information storage and processing:Information storage and processing:Poorly characterized:Cellular processes and signaling:Poorly characterized" 171 "Cation transport ATPase:Cation transport ATPase:cation channel activity:ATP binding:metabolic process:cadmium-exporting ATPase activity:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism:metal ion transport:metal ion binding:metal ion transmembrane transporter activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ATPase-IB_hvy:ATPase-IB_hvy:Metabolism:Metabolism" 172 "ATP-dependent DNA ligase:ATP-dependent DNA ligase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Predicted membrane protein:Predicted membrane protein:nucleotide binding:DNA binding:DNA ligase (ATP) activity:protein binding:ATP binding:DNA replication:DNA repair:DNA recombination:Replication, recombination and repair:Replication, recombination and repair:DNA replication:DNA replication:Base excision repair:Base excision repair:Nucleotide excision repair:Nucleotide excision repair:Mismatch repair:Mismatch repair:Function unknown:Function unknown:dnl1:dnl1:Genetic Information Processing:Poorly characterized:Replication and Repair:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing:Poorly characterized:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair:Genetic Information Processing:Replication and Repair" 173 "Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Cobalamin-5-phosphate synthase:Cobalamin-5-phosphate synthase:Chaperonin GroEL (HSP60 family):Chaperonin GroEL (HSP60 family):Sugar kinases, ribokinase family:Sugar kinases, ribokinase family:Na+-driven multidrug efflux pump:Na+-driven multidrug efflux pump:Predicted phosphoesterase:Predicted phosphoesterase:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:Predicted hydrolase (HAD superfamily):Predicted hydrolase (HAD superfamily):ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B:Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B:Predicted membrane protein:Predicted membrane protein:Uncharacterized conserved protein:Uncharacterized conserved protein:GTP:adenosylcobinamide-phosphate guanylyltransferase:GTP:adenosylcobinamide-phosphate guanylyltransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleic acid binding:sequence-specific DNA binding transcription factor activity:DNA-directed DNA polymerase activity:histidinol-phosphate transaminase activity:protein binding:ATP binding:DNA replication:transcription, DNA-dependent:protein folding:drug transmembrane transport:isoprenoid biosynthetic process:3'-5' exonuclease activity:cobalamin 5'-phosphate synthase activity:phosphoglycolate phosphatase activity:nucleotide catabolic process:cobalamin biosynthetic process:drug transmembrane transporter activity:antiporter activity:transferase activity, transferring nitrogenous groups:hydrolase activity:ATPase activity:pyridoxal phosphate binding:adenosylcobinamide hydrolase activity:threonine-phosphate decarboxylase activity:adenosylcobinamide-GDP ribazoletransferase activity:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Histidine metabolism:Histidine metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:yfcE:yfcE:matE:matE:L_thr_O3P_dcar:L_thr_O3P_dcar:HAD-SF-IA-v1:HAD-SF-IA-v1:thermosome_arch:thermosome_arch:Defense mechanisms:Defense mechanisms:Nucleotide Metabolism:Protein fate:Protein folding and stabilization:Transport and binding proteins:Other:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Transport and binding proteins:Protein fate:Heme, porphyrin, and cobalamin:Enzymes of unknown specificity:Other:Protein folding and stabilization:Global:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Biosynthesis of Other Secondary Metabolites:Nucleotide Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Metabolism" 174 "Energy production and conversion:Energy production and conversion:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Glutamine synthetase:Glutamine synthetase:Ribonucleotide reductase, alpha subunit:Ribonucleotide reductase, alpha subunit:ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type cobalt transport system, permease component CbiQ and related transporters:ABC-type cobalt transport system, permease component CbiQ and related transporters:Phosphate uptake regulator:Phosphate uptake regulator:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type metal ion transport system, periplasmic component/surface adhesin:DNA modification methylase:DNA modification methylase:Precorrin-3B methylase:Precorrin-3B methylase:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Mn-dependent transcriptional regulator:Mn-dependent transcriptional regulator:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Aspartate carbamoyltransferase, regulatory subunit:Aspartate carbamoyltransferase, regulatory subunit:ATPase (PilT family):ATPase (PilT family):Leucyl aminopeptidase (aminopeptidase T):Leucyl aminopeptidase (aminopeptidase T):Zn-dependent carboxypeptidase:Zn-dependent carboxypeptidase:ABC-type proline/glycine betaine transport system, ATPase component:ABC-type proline/glycine betaine transport system, ATPase component:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleotide binding:DNA binding:sequence-specific DNA binding transcription factor activity:RNA binding:aspartate carbamoyltransferase activity:dihydrolipoyl dehydrogenase activity:aminopeptidase activity:metallocarboxypeptidase activity:glutamate-ammonia ligase activity:pyruvate dehydrogenase (acetyl-transferring) activity:dihydrolipoyllysine-residue acetyltransferase activity:ribonucleoside-diphosphate reductase activity:transporter activity:inorganic phosphate transmembrane transporter activity:binding:iron ion binding:protein binding:ATP binding:sugar binding:electron transport:'de novo' pyrimidine base biosynthetic process:DNA replication:DNA methylation:regulation of transcription, DNA-dependent:proteolysis:glutamine biosynthetic process:transport:phosphate ion transport:cobalt ion transport:metabolic process:N-methyltransferase activity:serine-type peptidase activity:cobalamin biosynthetic process:nitrogen fixation:cobalt ion transmembrane transporter activity:peptide transporter activity:phosphate ion transmembrane-transporting ATPase activity:peptide transport:ATPase activity:nucleoside-triphosphatase activity:precorrin-3B C17-methyltransferase activity:cobalamin binding:ATPase activity, coupled to transmembrane movement of substances:cell redox homeostasis:flavin adenine dinucleotide binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Arginine and proline metabolism:Arginine and proline metabolism:Pyruvate metabolism:Pyruvate metabolism:Butanoate metabolism:Butanoate metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:General function prediction only:General function prediction only:ATCase_reg:ATCase_reg:GlnA:GlnA:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:lipoamide_DH:lipoamide_DH:cobJ_cbiH:cobJ_cbiH:oligo_HPY:oligo_HPY:phoU_full:phoU_full:ptsS_2:ptsS_2:phosphate_pstC:phosphate_pstC:CbiQ_TIGR:CbiQ_TIGR:NrdJ_Z:NrdJ_Z:Nucleotide Metabolism:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:2'-Deoxyribonucleotide metabolism:Transport and binding proteins:Amino acids, peptides and amines:Anions:Cations and iron carrying compounds:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Metabolism:Poorly characterized:Carbohydrate Metabolism:Environmental Information Processing:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Membrane Transport:Signal Transduction:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Transport and binding proteins:Purines, pyrimidines, nucleosides, and nucleotides:Heme, porphyrin, and cobalamin:Glutamate family:Cations and iron carrying compounds:Anions:Amino acids, peptides and amines:2'-Deoxyribonucleotide metabolism:Pyrimidine ribonucleotide biosynthesis:Global:Global:Metabolism:Signal Transduction:Membrane Transport:Environmental Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism" 175 "Phytoene/squalene synthetase:Phytoene/squalene synthetase:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:biosynthetic process:geranylgeranyl-diphosphate geranylgeranyltransferase activity:Lipid transport and metabolism:Lipid transport and metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Function unknown:Function unknown:Metabolism:Metabolism:Poorly characterized:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism:Global:Metabolism:Poorly characterized:Metabolism:Metabolism of Terpenoids and Polyketides:Global" 176 "Histidinol dehydrogenase:Histidinol dehydrogenase:Amino acid transport and metabolism:Amino acid transport and metabolism:histidine biosynthetic process:histidinol dehydrogenase activity:zinc ion binding:NAD binding:Histidine metabolism:Histidine metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:hisD:hisD:Metabolism:Metabolism:Amino Acid Metabolism:Histidine family:Global:Metabolism:Global:Metabolism:Amino Acid Metabolism:Amino acid biosynthesis:Histidine family:Metabolism:Metabolism:Amino acid biosynthesis" 177 "DNA repair exonuclease:DNA repair exonuclease:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:exonuclease activity:regulation of nitrogen utilization:potassium ion transport:cation transmembrane transporter activity:potassium-transporting ATPase activity:transcription repressor activity:hydrolase activity:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:kdpA:kdpA:Cations and iron carrying compounds:Information storage and processing:Metabolism:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Transport and binding proteins:Information storage and processing:Metabolism:Environmental Information Processing:Signal Transduction:Transport and binding proteins" 178 "ABC-type cobalt transport system, ATPase component:ABC-type cobalt transport system, ATPase component:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted P-loop ATPase fused to an acetyltransferase:Predicted P-loop ATPase fused to an acetyltransferase:ATP binding:ATPase activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:ABC transporters:General function prediction only:General function prediction only:Membrane Transport:Metabolism:Poorly characterized:Metabolism:Environmental Information Processing:Environmental Information Processing:Poorly characterized:Membrane Transport" 179 "Glutamate dehydrogenase/leucine dehydrogenase:Glutamate dehydrogenase/leucine dehydrogenase:Cytosine deaminase and related metal-dependent hydrolases:Cytosine deaminase and related metal-dependent hydrolases:Carbamoylphosphate synthase large subunit (split gene in MJ):Carbamoylphosphate synthase large subunit (split gene in MJ):Thiamine monophosphate kinase:Thiamine monophosphate kinase:Deoxycytidine deaminase:Deoxycytidine deaminase:Erythromycin esterase homolog:Erythromycin esterase homolog:Transposase and inactivated derivatives, IS5 family:Transposase and inactivated derivatives, IS5 family:Predicted membrane protein:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:DNA binding:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity:dUTP diphosphatase activity:glutamate dehydrogenase [NAD(P)+] activity:transposase activity:ATP binding:transposition, DNA-mediated:cellular amino acid metabolic process:arginine biosynthetic process:guanine deaminase activity:thiamine-phosphate kinase activity:thiamine biosynthetic process:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds:pyrroloquinoline quinone biosynthetic process:pyrimidine base biosynthetic process:dUTP metabolic process:response to antibiotic:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Thiamine metabolism:Thiamine metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:Function unknown:Function unknown:CPSaseII_lrg:CPSaseII_lrg:thiL:thiL:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Thiamine:Information storage and processing:Metabolism:Poorly characterized:Thiamine:Pyrimidine ribonucleotide biosynthesis:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Information storage and processing:Poorly characterized:Metabolism:Energy Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism of Cofactors and Vitamins:Purines, pyrimidines, nucleosides, and nucleotides" 180 "Energy production and conversion:Energy production and conversion:Ribosomal protein L11:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L23:Ribosomal protein L22:Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein S3:Ribosomal protein L5:Ribosomal protein L5:Ribosomal protein L6P/L9E:Ribosomal protein L6P/L9E:Ribosomal protein S13:Ribosomal protein S13:Ribosomal protein S11:Ribosomal protein S11:Ribosomal protein L13:Ribosomal protein L13:Ribosomal protein S19:Ribosomal protein S19:Ribosomal protein L15:Ribosomal protein L15:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L10:Ribosomal protein L10:Lactoylglutathione lyase and related lyases:Lactoylglutathione lyase and related lyases:Ribosomal protein S4 and related proteins:Ribosomal protein S4 and related proteins:Translation initiation factor 2, alpha subunit (eIF-2alpha):Translation initiation factor 2, alpha subunit (eIF-2alpha):FOG: HEAT repeat:FOG: HEAT repeat:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:RNase P/RNase MRP subunit p29:RNase P/RNase MRP subunit p29:Ribosomal protein L44E:Ribosomal protein L44E:DNA-directed RNA polymerase, subunit N (RpoN/RPB10):DNA-directed RNA polymerase, subunit N (RpoN/RPB10):Ribosomal protein L18E:Ribosomal protein L18E:DNA-directed RNA polymerase, subunit K/omega:DNA-directed RNA polymerase, subunit K/omega:Ribosomal protein S27E:Ribosomal protein S27E:Ribosomal protein L31E:Ribosomal protein L31E:Ribosomal protein L19E:Ribosomal protein L19E:Predicted Zn-ribbon RNA-binding protein:Predicted Zn-ribbon RNA-binding protein:Amino acid transport and metabolism:Amino acid transport and metabolism:nucleotide binding:DNA binding:RNA binding:structural constituent of ribosome:translation initiation factor activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:ribonuclease P activity:binding:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational elongation:tRNA processing:rRNA binding:ribosome biogenesis:protein dimerization activity:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Pyruvate metabolism:Metabolic pathways:Metabolic pathways:Two-component system:Two-component system:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Function unknown:Function unknown:rpsC_E_A:rpsC_E_A:rpsD_arch:rpsD_arch:rpsS_arch:rpsS_arch:L22_arch:L22_arch:L13_A_E:L13_A_E:L3_arch:L3_arch:arch_S11P:arch_S11P:arch_S13P:arch_S13P:L23_arch:L23_arch:arch_L6P:arch_L6P:rpl4p_arch:rpl4p_arch:L21P_arch:L21P_arch:Carbohydrate Metabolism:Metabolism:Poorly characterized:Global:Metabolism:Information storage and processing:Metabolism:Genetic Information Processing:Protein synthesis:Ribosomal proteins: synthesis and modification:Environmental Information Processing:Protein synthesis:Ribosomal proteins: synthesis and modification:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Global:Metabolism:Signal Transduction:Signal Transduction:Translation:Transcription:Nucleotide Metabolism:Carbohydrate Metabolism:Environmental Information Processing:Translation:Transcription:Genetic Information Processing:Nucleotide Metabolism" 181 "gas vesicle organization" 182 "Predicted transcriptional regulators:Predicted transcriptional regulators:structural molecule activity:gas vesicle organization:Transcription:Transcription:Information storage and processing:Information storage and processing" 183 "Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Phosphatidylglycerophosphate synthase:Phosphatidylglycerophosphate synthase:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Amino acid transport and metabolism:Amino acid transport and metabolism:histidine biosynthetic process:nucleic acid binding:histidinol-phosphate transaminase activity:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity:phospholipid biosynthetic process:pyridoxal phosphate binding:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Histidine metabolism:Histidine metabolism:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:hisC:hisC:Global:Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism:Global:Metabolism:Amino acid biosynthesis:Histidine family:Information storage and processing:Metabolism:Biosynthesis of Other Secondary Metabolites:Amino Acid Metabolism:Lipid Metabolism:Metabolism:Information storage and processing:Metabolism:Lipid Metabolism:Amino Acid Metabolism:Amino acid biosynthesis:Histidine family" 184 "Energy production and conversion:Energy production and conversion:Signal recognition particle GTPase:Signal recognition particle GTPase:Chemotaxis protein histidine kinase and related kinases:Chemotaxis protein histidine kinase and related kinases:FOG: CheY-like receiver:FOG: CheY-like receiver:DNA modification methylase:DNA modification methylase:FKBP-type peptidyl-prolyl cis-trans isomerases 2:FKBP-type peptidyl-prolyl cis-trans isomerases 2:Rad3-related DNA helicases:Rad3-related DNA helicases:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Methylase of chemotaxis methyl-accepting proteins:Methylase of chemotaxis methyl-accepting proteins:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Predicted prefoldin, molecular chaperone implicated in de novo protein folding:Predicted prefoldin, molecular chaperone implicated in de novo protein folding:Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein:Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein:Chemotaxis protein CheC, inhibitor of MCP methylation:Chemotaxis protein CheC, inhibitor of MCP methylation:Chemotaxis protein; stimulates methylation of MCP proteins:Chemotaxis protein; stimulates methylation of MCP proteins:Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain:Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain:Amino acid transport and metabolism:Amino acid transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:DNA binding:peptidyl-prolyl cis-trans isomerase activity:ATP-dependent DNA helicase activity:dihydrolipoyl dehydrogenase activity:cyclophilin:ATP binding:GTP binding:electron transport:nucleobase-containing compound metabolic process:DNA methylation:regulation of transcription, DNA-dependent:protein folding:proteolysis:SRP-dependent cotranslational protein targeting to membrane:cellular component movement:chemotaxis:ATP-dependent helicase activity:N-methyltransferase activity:serine-type peptidase activity:lipid binding:7S RNA binding:protein-glutamate O-methyltransferase activity:protein-glutamate methylesterase activity:nucleoside-triphosphatase activity:peptidyl-histidine phosphorylation:FK506-sensitive peptidyl-prolyl cis-trans isomerase:cyclophilin-type peptidyl-prolyl cis-trans isomerase activity:cell redox homeostasis:protein-glutamine glutaminase activity:flavin adenine dinucleotide binding:unfolded protein binding:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Pyruvate metabolism:Pyruvate metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Bacterial chemotaxis:Bacterial chemotaxis:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:Nucleotide excision repair:Nucleotide excision repair:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:ftsY:ftsY:TIGR00293:TIGR00293:lipoamide_DH:lipoamide_DH:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein fate:Genetic Information Processing:Environmental Information Processing:Cellular Processes:Global:Protein folding and stabilization:Protein and peptide secretion and trafficking:Protein fate:Cell Motility:Signal Transduction:Membrane Transport:Replication and Repair:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Membrane Transport:Signal Transduction:Cellular Processes:Cell Motility:Global:Metabolism:Metabolism:Protein folding and stabilization:Protein and peptide secretion and trafficking:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Folding Sorting and Degradation:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism" 185 "SAM-dependent methyltransferases:SAM-dependent methyltransferases:MoxR-like ATPases:MoxR-like ATPases:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity:ATP binding:protein modification process:metabolic process:methyltransferase activity:ATPase activity:gas vesicle organization:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:gas_vesic_GvpN:gas_vesic_GvpN:Cellular processes:Other:Metabolism:Poorly characterized:Other:Poorly characterized:Cellular processes:Metabolism" 186 "Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:Asparaginase:Asparaginase:Phospholipid-binding protein:Phospholipid-binding protein:Predicted membrane protein:Predicted membrane protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:asparaginase activity:DNA recombination:glycoprotein catabolic process:beta-aspartyl-peptidase activity:cobalamin biosynthetic process:DNA integration:hydrolase activity:cobyrinic acid a,c-diamide synthase activity:Replication, recombination and repair:Replication, recombination and repair:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Cyanoamino acid metabolism:Cyanoamino acid metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00481:TIGR00481:Metabolism of Other Amino Acids:Energy Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Amino Acid Metabolism:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Energy Metabolism:Unknown function:General:Metabolism of Other Amino Acids:Global:Metabolism:Metabolism:Amino Acid Metabolism" 187 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:Translation initiation factor 1 (IF-1):Translation initiation factor 1 (IF-1):RecA-superfamily ATPases implicated in signal transduction:RecA-superfamily ATPases implicated in signal transduction:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Transposase and inactivated derivatives:Transposase and inactivated derivatives:DNA-binding ferritin-like protein (oxidative damage protectant):DNA-binding ferritin-like protein (oxidative damage protectant):Uncharacterized Rossmann fold enzyme:Uncharacterized Rossmann fold enzyme:Sec-independent protein secretion pathway components:Sec-independent protein secretion pathway components:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:DNA-binding protein:DNA-binding protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Plastocyanin:Plastocyanin:Uncharacterized conserved protein:Uncharacterized conserved protein:DNA binding:RNA binding:translation initiation factor activity:asparagine synthase (glutamine-hydrolyzing) activity:serine-type endopeptidase activity:copper ion binding:protein binding:electron transport:translational initiation:proteolysis:asparagine biosynthetic process:potassium ion transport:cellular iron ion homeostasis:response to stress:ferric iron binding:metallopeptidase activity:zinc ion binding:cation transmembrane transporter activity:protein transporter activity:electron carrier activity:cobalamin biosynthetic process:protein transport:oxidoreductase activity:sirohydrochlorin cobaltochelatase activity:metal ion binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:tatAE:tatAE:tspaseT_teng_C:tspaseT_teng_C:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Mobile and extrachromosomal element functions:Protein fate:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Protein fate:Protein and peptide secretion and trafficking:Mobile and extrachromosomal element functions:Transposon functions:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transposon functions:Protein and peptide secretion and trafficking:Global:Environmental Information Processing" 188 "RecA-superfamily ATPases implicated in signal transduction:RecA-superfamily ATPases implicated in signal transduction:Predicted transcriptional regulators:Predicted transcriptional regulators:structural molecule activity:ATP binding:gas vesicle organization:Transcription:Transcription:Signal transduction mechanisms:Signal transduction mechanisms:Information storage and processing:Cellular processes and signaling:Information storage and processing:Cellular processes and signaling" 189 "Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Cation transport ATPase:Cation transport ATPase:nucleotide binding:cation channel activity:ATP binding:metabolic process:cadmium-exporting ATPase activity:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism:ATPase activity:nucleoside-triphosphatase activity:metal ion transport:metal ion binding:metal ion transmembrane transporter activity:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ATPase-IB_hvy:ATPase-IB_hvy:TIGR02928:TIGR02928:Metabolism:DNA replication, recombination, and repair:DNA metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling" 190 "Energy production and conversion:Energy production and conversion:Predicted GTPase, probable translation factor:Predicted GTPase, probable translation factor:Predicted GTPase:Predicted GTPase:Hydrogenase maturation factor:Hydrogenase maturation factor:ATPase involved in DNA repair:ATPase involved in DNA repair:Anthranilate/para-aminobenzoate synthases component II:Anthranilate/para-aminobenzoate synthases component II:Predicted 6-phosphogluconate dehydrogenase:Predicted 6-phosphogluconate dehydrogenase:Serine acetyltransferase:Serine acetyltransferase:Cobalamin biosynthesis protein CobD/CbiB:Cobalamin biosynthesis protein CobD/CbiB:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted transcriptional regulator:Predicted transcriptional regulator:Na+/H+ antiporter:Na+/H+ antiporter:Predicted membrane protein:Predicted membrane protein:Predicted CoA-binding protein:Predicted CoA-binding protein:Predicted membrane protein:Predicted membrane protein:Sugar transferases involved in lipopolysaccharide synthesis:Sugar transferases involved in lipopolysaccharide synthesis:Leucyl aminopeptidase (aminopeptidase T):Leucyl aminopeptidase (aminopeptidase T):Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain):Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain):Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted membrane protein:Predicted membrane protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized membrane protein:Uncharacterized membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:GTPase activity:anthranilate synthase activity:aminopeptidase activity:phosphogluconate dehydrogenase (decarboxylating) activity:aminoacyl-tRNA ligase activity:ATP binding:GTP binding:pentose-phosphate shunt:DNA metabolic process:translation:proteolysis:cysteine biosynthetic process from serine:glutamine metabolic process:sodium ion transport:regulation of pH:response to stress:metabolic process:methyltransferase activity:serine O-acetyltransferase activity:biosynthetic process:cobalamin biosynthetic process:ferrous iron transmembrane transporter activity:sodium:hydrogen antiporter activity:ferrous iron transport:sequence-specific DNA binding:adenosylcobinamide-phosphate synthase activity:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity:NADP binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Pentose phosphate pathway:Pentose phosphate pathway:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Glutathione metabolism:Glutathione metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Sulfur metabolism:Sulfur metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:gatE_arch:gatE_arch:TIGR00341:TIGR00341:trpG_papA:trpG_papA:cysE:cysE:TAT_signal_seq:TAT_signal_seq:TIGR03624:TIGR03624:Chlor_Arch_YYY:Chlor_Arch_YYY:Protein synthesis:Serine family:Amino acid biosynthesis:Conserved:Protein and peptide secretion and trafficking:tRNA aminoacylation:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Unknown function:Energy Metabolism:Amino Acid Metabolism:Hypothetical proteins:Protein fate:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Global:Metabolism:Protein synthesis:tRNA aminoacylation:Protein fate:Protein and peptide secretion and trafficking:Hypothetical proteins:Conserved:Unknown function:General:Amino acid biosynthesis:Serine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 191 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Polyprenyltransferase (cytochrome oxidase assembly factor):Polyprenyltransferase (cytochrome oxidase assembly factor):Superfamily I DNA and RNA helicases:Superfamily I DNA and RNA helicases:Molecular chaperone:Molecular chaperone:Anthranilate phosphoribosyltransferase:Anthranilate phosphoribosyltransferase:Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family:Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family:Aldo/keto reductases, related to diketogulonate reductase:Aldo/keto reductases, related to diketogulonate reductase:Chemotaxis signal transduction protein:Chemotaxis signal transduction protein:Heme/copper-type cytochrome/quinol oxidases, subunit 1:Heme/copper-type cytochrome/quinol oxidases, subunit 1:NAD-dependent aldehyde dehydrogenases:NAD-dependent aldehyde dehydrogenases:ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:3-hydroxyacyl-CoA dehydrogenase:3-hydroxyacyl-CoA dehydrogenase:Cold shock proteins:Cold shock proteins:Transcription factor homologous to NACalpha-BTF3:Transcription factor homologous to NACalpha-BTF3:Uncharacterized archaeal coiled-coil protein:Uncharacterized archaeal coiled-coil protein:Predicted alternative thymidylate synthase:Predicted alternative thymidylate synthase:Ribosomal protein HS6-type (S12/L30/L7a):Ribosomal protein HS6-type (S12/L30/L7a):Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain):Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain):Predicted metal-binding protein:Predicted metal-binding protein:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Ribosomal protein L24E:Ribosomal protein L24E:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleic acid binding:DNA binding:sequence-specific DNA binding transcription factor activity:structural constituent of ribosome:peptidyl-prolyl cis-trans isomerase activity:acyl-CoA dehydrogenase activity:ATP-dependent DNA helicase activity:anthranilate phosphoribosyltransferase activity:cytochrome-c oxidase activity:cyclophilin:phosphogluconate dehydrogenase (decarboxylating) activity:phosphoserine phosphatase activity:aminoacyl-tRNA ligase activity:signal transducer activity:iron ion binding:protein binding:ATP binding:sugar binding:pentose-phosphate shunt:electron transport:dTMP biosynthetic process:DNA repair:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:translation:tRNA aminoacylation for protein translation:protein folding:protein complex assembly:fatty acid metabolic process:porphyrin-containing compound biosynthetic process:heme biosynthetic process:chemotaxis:signal transduction:metabolic process:zinc ion binding:protoheme IX farnesyltransferase activity:3-hydroxybutyryl-CoA dehydrogenase activity:aerobic respiration:cobalamin biosynthetic process:aa3-type cytochrome c oxidase:ba3-type cytochrome c oxidase:caa3-type cytochrome c oxidase:cbb3-type cytochrome c oxidase:oxidoreductase activity:heme binding:FK506-sensitive peptidyl-prolyl cis-trans isomerase:phosphopantetheine binding:cyclophilin-type peptidyl-prolyl cis-trans isomerase activity:cobyrinic acid a,c-diamide synthase activity:ribosome biogenesis:2,5-didehydrogluconate reductase activity:flavin adenine dinucleotide binding:coenzyme binding:thymidylate synthase (FAD) activity:unfolded protein binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Pentose and glucuronate interconversions:Pentose and glucuronate interconversions:Ascorbate and aldarate metabolism:Ascorbate and aldarate metabolism:Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Pyrimidine metabolism:Pyrimidine metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Geraniol degradation:Geraniol degradation:Lysine degradation:Lysine degradation:Arginine and proline metabolism:Arginine and proline metabolism:Histidine metabolism:Histidine metabolism:Benzoate degradation:Benzoate degradation:Tryptophan metabolism:Tryptophan metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:beta-Alanine metabolism:beta-Alanine metabolism:Glycerolipid metabolism:Glycerolipid metabolism:Pyruvate metabolism:Pyruvate metabolism:Chloroalkane and chloroalkene degradation:Chloroalkane and chloroalkene degradation:Naphthalene degradation:Naphthalene degradation:Propanoate metabolism:Propanoate metabolism:Butanoate metabolism:Butanoate metabolism:One carbon pool by folate:One carbon pool by folate:Methane metabolism:Methane metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Limonene and pinene degradation:Limonene and pinene degradation:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Bacterial chemotaxis:Bacterial chemotaxis:Ribosome:Ribosome:RNA degradation:RNA degradation:Basal transcription factors:Basal transcription factors:DNA replication:DNA replication:Nucleotide excision repair:Nucleotide excision repair:Mismatch repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00264:TIGR00264:cysG_Nterm:cysG_Nterm:cyoE_ctaB:cyoE_ctaB:thyX:thyX:prok_dnaK:prok_dnaK:CtaD_CoxA:CtaD_CoxA:rpl7ae:rpl7ae:Nucleotide Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Transcription:Translation:Folding Sorting and Degradation:Replication and Repair:Signal Transduction:Cell Motility:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Cellular Processes:Global:Electron transport:2'-Deoxyribonucleotide metabolism:Protein folding and stabilization:General:Heme, porphyrin, and cobalamin:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Protein fate:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Transcription:Translation:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Signal Transduction:Cellular Processes:Cell Motility:Global:Metabolism:Energy metabolism:Electron transport:Purines, pyrimidines, nucleosides, and nucleotides:2'-Deoxyribonucleotide metabolism:Protein fate:Protein folding and stabilization:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Amino Acid Metabolism" 192 "RNA processing and modification:RNA processing and modification:Energy production and conversion:Energy production and conversion:Geranylgeranyl pyrophosphate synthase:Geranylgeranyl pyrophosphate synthase:Acetyl-CoA acetyltransferase:Acetyl-CoA acetyltransferase:RNA 3'-terminal phosphate cyclase:RNA 3'-terminal phosphate cyclase:Pyruvate kinase:Pyruvate kinase:RIO-like serine/threonine protein kinase fused to N-terminal HTH domain:RIO-like serine/threonine protein kinase fused to N-terminal HTH domain:Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Translation initiation factor 2 (IF-2; GTPase):Translation initiation factor 2 (IF-2; GTPase):Transposase and inactivated derivatives:Transposase and inactivated derivatives:NAD-dependent aldehyde dehydrogenases:NAD-dependent aldehyde dehydrogenases:Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain:Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Predicted metal-dependent protease of the PAD1/JAB1 superfamily:Predicted metal-dependent protease of the PAD1/JAB1 superfamily:DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS:DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme:Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:magnesium ion binding:DNA binding:RNA binding:translation initiation factor activity:catalytic activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:GTPase activity:RNA-3'-phosphate cyclase activity:acetyl-CoA C-acetyltransferase activity:acetyl-CoA C-acyltransferase activity:ribonuclease P activity:polyribonucleotide nucleotidyltransferase activity:protein kinase CK2 activity:protein tyrosine kinase activity:pyruvate kinase activity:calcium ion binding:ATP binding:GTP binding:glycolysis:electron transport:DNA-dependent DNA replication initiation:regulation of transcription, DNA-dependent:RNA processing:mRNA catabolic process:translational initiation:protein phosphorylation:DNA-dependent ATPase activity:metabolic process:zinc ion binding:isoprenoid biosynthetic process:inositol monophosphate phosphatase activity:electron carrier activity:biosynthetic process:phosphorylation:oxidoreductase activity:intein-mediated protein splicing:transcription regulator activity:potassium ion binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Fatty acid metabolism:Fatty acid metabolism:Purine metabolism:Purine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Geraniol degradation:Geraniol degradation:Benzoate degradation:Benzoate degradation:Streptomycin biosynthesis:Streptomycin biosynthesis:Inositol phosphate metabolism:Inositol phosphate metabolism:alpha-Linolenic acid metabolism:alpha-Linolenic acid metabolism:Pyruvate metabolism:Pyruvate metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:small_GTP:small_GTP:pyruv_kin:pyruv_kin:TFS_arch:TFS_arch:intein_Cterm:intein_Cterm:fkbM_fam:fkbM_fam:tspaseT_teng_C:tspaseT_teng_C:RNA_3prim_cycl:RNA_3prim_cycl:Transposon functions:Energy metabolism:Transcription:Mobile and extrachromosomal element functions:Unknown function:RNA processing:Transcription factors:Glycolysis/gluconeogenesis:Global:Metabolism:Metabolism:Xenobiotics Biodegradation and Metabolism:Biosynthesis of Other Secondary Metabolites:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Xenobiotics Biodegradation and Metabolism:Global:Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Transcription:Transcription factors:RNA processing:Mobile and extrachromosomal element functions:Transposon functions:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Carbohydrate Metabolism:General" 193 "Energy production and conversion:Energy production and conversion:Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog):Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog):Ribosomal protein L16/L10E:Ribosomal protein L16/L10E:Lipoate synthase:Lipoate synthase:Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins:Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins:Valyl-tRNA synthetase:Valyl-tRNA synthetase:Helicase subunit of the DNA excision repair complex:Helicase subunit of the DNA excision repair complex:Phosphoserine phosphatase:Phosphoserine phosphatase:2-methylthioadenine synthetase:2-methylthioadenine synthetase:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Permeases of the drug/metabolite transporter (DMT) superfamily:Permeases of the drug/metabolite transporter (DMT) superfamily:ABC-type Fe3+ transport system, permease component:ABC-type Fe3+ transport system, permease component:ATP-dependent 26S proteasome regulatory subunit:ATP-dependent 26S proteasome regulatory subunit:Predicted ATPase, RNase L inhibitor (RLI) homolog:Predicted ATPase, RNase L inhibitor (RLI) homolog:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted transcription factor, homolog of eukaryotic MBF1:Predicted transcription factor, homolog of eukaryotic MBF1:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems:Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems:ABC-type phosphate/phosphonate transport system, periplasmic component:ABC-type phosphate/phosphonate transport system, periplasmic component:Uncharacterized conserved protein:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleotide binding:DNA binding:structural constituent of ribosome:catalytic activity:DNA topoisomerase (ATP-hydrolyzing) activity:adenine phosphoribosyltransferase activity:helicase activity:phosphoserine phosphatase activity:valine-tRNA ligase activity:transporter activity:ATP binding:electron transport:adenine salvage:DNA topological change:DNA unwinding involved in replication:nucleotide-excision repair:translation:valyl-tRNA aminoacylation:L-serine biosynthetic process:transport:metabolic process:electron carrier activity:lipoate biosynthetic process:nucleoside metabolic process:excinuclease ABC activity:ATPase activity:lipoate synthase activity:nucleoside-triphosphatase activity:protein catabolic process:2-oxoglutarate synthase activity:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Purine metabolism:Purine metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Lipoic acid metabolism:Lipoic acid metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Ribosome:Ribosome:Proteasome:Proteasome:Nucleotide excision repair:Nucleotide excision repair:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00089:TIGR00089:gatB:gatB:serB:serB:valS:valS:lipA:lipA:uvrb:uvrb:top6b:top6b:26Sp45:26Sp45:tspaseT_teng_C:tspaseT_teng_C:TIGR02928:TIGR02928:OAFO_sf:OAFO_sf:Metabolism:Poorly characterized:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Folding Sorting and Degradation:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Mobile and extrachromosomal element functions:Protein synthesis:DNA metabolism:Lipoate:Serine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Transposon functions:Energy Metabolism:Carbohydrate Metabolism:tRNA aminoacylation:Nucleotide Metabolism:DNA replication, recombination, and repair:Amino Acid Metabolism:Global:Environmental Information Processing:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Membrane Transport:Global:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation:Mobile and extrachromosomal element functions:Transposon functions:Amino acid biosynthesis:Serine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Lipoate:Information storage and processing:Cellular processes and signaling" 194 "Dihydroorotase and related cyclic amidohydrolases:Dihydroorotase and related cyclic amidohydrolases:Phosphoribosylaminoimidazole (AIR) synthetase:Phosphoribosylaminoimidazole (AIR) synthetase:Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase):Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase):UDP-N-acetylglucosamine 2-epimerase:UDP-N-acetylglucosamine 2-epimerase:Glycosyltransferase:Glycosyltransferase:Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins:Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins:Ca2+/Na+ antiporter:Ca2+/Na+ antiporter:Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain:Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain:Predicted hydrolase (HAD superfamily):Predicted hydrolase (HAD superfamily):Rad3-related DNA helicases:Rad3-related DNA helicases:Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):Uncharacterized membrane protein, required for N-linked glycosylation:Uncharacterized membrane protein, required for N-linked glycosylation:Uncharacterized conserved protein:Uncharacterized conserved protein:Permease, similar to cation transporters:Permease, similar to cation transporters:Predicted phosphoesterases, related to the Icc protein:Predicted phosphoesterases, related to the Icc protein:Predicted membrane protein:Predicted membrane protein:Uncharacterized conserved protein:Uncharacterized conserved protein:ABC-type phosphate/phosphonate transport system, permease component:ABC-type phosphate/phosphonate transport system, permease component:ABC-type thiamine transport system, periplasmic component:ABC-type thiamine transport system, periplasmic component:Nucleotide transport and metabolism:Nucleotide transport and metabolism:polysaccharide biosynthetic process:nucleic acid binding:DNA binding:catalytic activity:UDP-N-acetylglucosamine diphosphorylase activity:adenine phosphoribosyltransferase activity:ATP-dependent DNA helicase activity:dihydroorotase activity:dolichyl-diphosphooligosaccharide-protein glycotransferase activity:phosphoribosylformylglycinamidine cyclo-ligase activity:aminoacyl-tRNA ligase activity:tryptophan-tRNA ligase activity:transporter activity:ATP binding:UDP-N-acetylglucosamine metabolic process:nucleobase-containing compound metabolic process:'de novo' IMP biosynthetic process:regulation of transcription, DNA-dependent:tRNA aminoacylation for protein translation:tryptophanyl-tRNA aminoacylation:protein glycosylation:transport:cation transport:ATP-dependent helicase activity:metabolic process:methyltransferase activity:cation transmembrane transporter activity:UDP-N-acetylglucosamine 2-epimerase activity:glucose-1-phosphate thymidylyltransferase activity:phosphoglycolate phosphatase activity:biosynthetic process:lipopolysaccharide biosynthetic process:nucleoside metabolic process:phosphonate transmembrane transporter activity:phosphonate transport:oxidoreductase activity:transferase activity, transferring acyl groups:nucleotidyltransferase activity:glucosamine-1-phosphate N-acetyltransferase activity:transition metal ion binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Tryptophan metabolism:Tryptophan metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Streptomycin biosynthesis:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:Nucleotide excision repair:Nucleotide excision repair:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00367:TIGR00367:pyrC_multi:pyrC_multi:purM:purM:PhnE:PhnE:sfuA:sfuA:HAD-SF-IA-v1:HAD-SF-IA-v1:Arch_glmU:Arch_glmU:Biosynthesis of Other Secondary Metabolites:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Replication and Repair:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Pyrimidine ribonucleotide biosynthesis:Transport and binding proteins:Anions:Other:Unknown function:Enzymes of unknown specificity:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of Other Secondary Metabolites:Translation:Unknown function:Transport and binding proteins:Purines, pyrimidines, nucleosides, and nucleotides:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Membrane Transport:General:Enzymes of unknown specificity:Other:Anions:Pyrimidine ribonucleotide biosynthesis:Purine ribonucleotide biosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Translation:Replication and Repair:Environmental Information Processing:Membrane Transport:Genetic Information Processing:Global:Metabolism" 195 "Energy production and conversion:Energy production and conversion:Malate/lactate dehydrogenases:Malate/lactate dehydrogenases:Malic enzyme:Malic enzyme:CTP synthase (UTP-ammonia lyase):CTP synthase (UTP-ammonia lyase):Predicted unusual protein kinase:Predicted unusual protein kinase:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Ribosomal protein L40E:Ribosomal protein L40E:Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein:Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein:Predicted metal-binding protein:Predicted metal-binding protein:Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain:Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain:Multisubunit Na+/H+ antiporter, MnhE subunit:Multisubunit Na+/H+ antiporter, MnhE subunit:Ribosomal protein S3AE:Ribosomal protein S3AE:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Small nuclear ribonucleoprotein (snRNP) homolog:Small nuclear ribonucleoprotein (snRNP) homolog:Acyl dehydratase:Acyl dehydratase:Preprotein translocase subunit Sss1:Preprotein translocase subunit Sss1:Nucleotide transport and metabolism:Nucleotide transport and metabolism:cell morphogenesis:nucleic acid binding:DNA binding:RNA binding:structural constituent of ribosome:CTP synthase activity:malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity:protein kinase activity:transposase activity:ATP binding:glycolysis:tricarboxylic acid cycle intermediate metabolic process:pyrimidine nucleotide biosynthetic process:transposition, DNA-mediated:translation:protein phosphorylation:glycerol ether metabolic process:cation transport:metabolic process:zinc ion binding:lipid binding:cation transmembrane transporter activity:electron carrier activity:protein transport:protein disulfide oxidoreductase activity:P-P-bond-hydrolysis-driven protein transmembrane transporter activity:mRNA metabolic process:oxidoreductase activity:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor:transferase activity, transferring acyl groups:hydrolase activity:cell redox homeostasis:metal ion binding:NAD binding:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Pyrimidine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Pyruvate metabolism:Glyoxylate and dicarboxylate metabolism:Glyoxylate and dicarboxylate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:Protein export:Protein export:General function prediction only:General function prediction only:secE_euk_arch:secE_euk_arch:PyrG:PyrG:thioredoxin:thioredoxin:tspaseT_teng_C:tspaseT_teng_C:arCOG00543:arCOG00543:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Genetic Information Processing:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Translation:Folding Sorting and Degradation:Metabolism:Metabolism:Genetic Information Processing:Global:Electron transport:Pyrimidine ribonucleotide biosynthesis:Protein and peptide secretion and trafficking:Transposon functions:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Protein fate:Mobile and extrachromosomal element functions:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Translation:Folding Sorting and Degradation:Global:Metabolism:Energy metabolism:Electron transport:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein fate:Protein and peptide secretion and trafficking:Mobile and extrachromosomal element functions:Transposon functions:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 196 "ATPase involved in DNA repair:ATPase involved in DNA repair:DNA repair exonuclease:DNA repair exonuclease:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Cation transport ATPase:Cation transport ATPase:Membrane protein involved in the export of O-antigen and teichoic acid:Membrane protein involved in the export of O-antigen and teichoic acid:nucleotide binding:polysaccharide biosynthetic process:sequence-specific DNA binding transcription factor activity:exonuclease activity:cation channel activity:ATP binding:DNA metabolic process:regulation of transcription, DNA-dependent:drug transmembrane transport:metabolic process:cadmium-exporting ATPase activity:drug transmembrane transporter activity:antiporter activity:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism:hydrolase activity:nucleoside-triphosphatase activity:metal ion transport:metal ion binding:metal ion transmembrane transporter activity:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:General function prediction only:General function prediction only:ATPase-IB_hvy:ATPase-IB_hvy:TIGR02928:TIGR02928:Poorly characterized:Poorly characterized:Cellular processes and signaling:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling:Metabolism" 197 "DNA-directed RNA polymerase, subunit H, RpoH/RPB5:DNA-directed RNA polymerase, subunit H, RpoH/RPB5:DNA binding:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:transcription, DNA-dependent:Transcription:Transcription:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:RNA polymerase:RNA polymerase:rpoB_arch:rpoB_arch:Metabolism:Nucleotide Metabolism:Global:Genetic Information Processing:Genetic Information Processing:Transcription:Metabolism:Global:Metabolism:Metabolism:Nucleotide Metabolism:Information storage and processing:Transcription:Information storage and processing" 198 "Glucose-6-phosphate isomerase:Glucose-6-phosphate isomerase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:glucose-6-phosphate isomerase activity:gluconeogenesis:glycolysis:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Pentose phosphate pathway:Starch and sucrose metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Metabolism:Carbohydrate Metabolism:Global:Metabolism:Metabolism:Metabolism:Metabolism:Carbohydrate Metabolism:Global:Metabolism" 199 "Energy production and conversion:Energy production and conversion:Adenylosuccinate synthase:Adenylosuccinate synthase:NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase subunit 1 (chain H):NADH:ubiquinone oxidoreductase subunit 1 (chain H):Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Nucleotide transport and metabolism:Nucleotide transport and metabolism:adenylosuccinate synthase activity:GTP binding:electron transport:mitochondrial electron transport, NADH to ubiquinone:purine nucleotide biosynthetic process:NADH dehydrogenase (ubiquinone) activity:Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Metabolic pathways:Metabolic pathways:Function unknown:Function unknown:purA:purA:Metabolism:Amino Acid Metabolism:Poorly characterized:Global:Metabolism:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Energy Metabolism:Poorly characterized:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Global:Metabolism:Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Metabolism:Nucleotide Metabolism" 200 "Predicted transcriptional regulators:Predicted transcriptional regulators:gas vesicle organization:Transcription:Transcription:Information storage and processing:Information storage and processing" 201 "ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:Metal-dependent hydrolases of the beta-lactamase superfamily I:Metal-dependent hydrolases of the beta-lactamase superfamily I:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:DNA binding:ATP binding:GTP binding:SRP-dependent cotranslational protein targeting to membrane:7S RNA binding:cobalamin biosynthetic process:transcription repressor activity:hydrolase activity:ATPase activity:cobyrinic acid a,c-diamide synthase activity:negative regulation of transcription, DNA-dependent:response to arsenic-containing substance:General function prediction only:General function prediction only:Defense mechanisms:Defense mechanisms:Poorly characterized:Cellular processes and signaling:Poorly characterized:Cellular processes and signaling" 202 "Predicted permease:Predicted permease:General function prediction only:General function prediction only:Poorly characterized:Poorly characterized" 203 "DNA polymerase elongation subunit (family B):DNA polymerase elongation subunit (family B):HD superfamily phosphohydrolases:HD superfamily phosphohydrolases:Predicted membrane protein:Predicted membrane protein:nucleotide binding:DNA binding:catalytic activity:DNA-directed DNA polymerase activity:DNA replication:Replication, recombination and repair:Replication, recombination and repair:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:Function unknown:Function unknown:Poorly characterized:Metabolism:Nucleotide Metabolism:Metabolism:Global:Information storage and processing:Poorly characterized:Metabolism:Nucleotide Metabolism:Global:Metabolism:Information storage and processing" 204 "Predicted ATPase:Predicted ATPase:ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:Chitinase:Chitinase:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:chitin catabolic process:endochitinase activity:cobalamin biosynthetic process:carbohydrate binding:cobyrinic acid a,c-diamide synthase activity:cation binding:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:General function prediction only:General function prediction only:Carbohydrate Metabolism:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Metabolism:Metabolism:Poorly characterized:Carbohydrate Metabolism" 205 "Energy production and conversion:Energy production and conversion:ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:ABC-type Co2+ transport system, permease component:ABC-type Co2+ transport system, permease component:Protein-tyrosine-phosphatase:Protein-tyrosine-phosphatase:ABC-type sugar transport system, permease component:ABC-type sugar transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type cobalt transport system, permease component CbiQ and related transporters:ABC-type cobalt transport system, permease component CbiQ and related transporters:Phosphate uptake regulator:Phosphate uptake regulator:Na+-dependent transporters of the SNF family:Na+-dependent transporters of the SNF family:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type sugar transport systems, permease components:ABC-type sugar transport systems, permease components:ABC-type sugar transport system, periplasmic component:ABC-type sugar transport system, periplasmic component:Alkaline phosphatase:Alkaline phosphatase:ABC-type cobalt transport system, periplasmic component:ABC-type cobalt transport system, periplasmic component:Plastocyanin:Plastocyanin:ABC-type sugar transport systems, ATPase components:ABC-type sugar transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:alkaline phosphatase activity:protein tyrosine phosphatase activity:transporter activity:inorganic phosphate transmembrane transporter activity:neurotransmitter:sodium symporter activity:binding:copper ion binding:ATP binding:electron transport:protein dephosphorylation:transport:phosphate ion transport:cobalt ion transport:neurotransmitter transport:metabolic process:electron carrier activity:cobalamin biosynthetic process:cobalt ion transmembrane transporter activity:phosphate ion transmembrane-transporting ATPase activity:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances:ATPase activity:ATPase activity, coupled to transmembrane movement of substances:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Aminobenzoate degradation:Aminobenzoate degradation:Folate biosynthesis:Folate biosynthesis:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:cbiM:cbiM:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:phoU_full:phoU_full:ptsS_2:ptsS_2:phosphate_pstC:phosphate_pstC:CbiQ_TIGR:CbiQ_TIGR:Global:Transport and binding proteins:Heme, porphyrin, and cobalamin:Cations and iron carrying compounds:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Transport and binding proteins:Anions:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cellular processes and signaling:Metabolism:Poorly characterized:Anions:Biosynthesis of cofactors, prosthetic groups, and carriers:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins" 206 "Energy production and conversion:Energy production and conversion:Glycosyltransferase:Glycosyltransferase:Sugar kinases, ribokinase family:Sugar kinases, ribokinase family:Thiamine monophosphate kinase:Thiamine monophosphate kinase:Fe-S oxidoreductases:Fe-S oxidoreductases:Hemolysins and related proteins containing CBS domains:Hemolysins and related proteins containing CBS domains:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:catalytic activity:thiamine-phosphate kinase activity:biosynthetic process:thiamine biosynthetic process:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Thiamine metabolism:Thiamine metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:Function unknown:Function unknown:thiL:thiL:F420_cofE:F420_cofE:rSAM_TYW1:rSAM_TYW1:tRNA and rRNA base modification:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Thiamine:Cellular processes and signaling:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Cellular processes and signaling:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:Thiamine:Other:tRNA and rRNA base modification:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Poorly characterized:Metabolism:Global:Metabolism:Poorly characterized:Protein synthesis" 207 "Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:FOG: WD40-like repeat:FOG: WD40-like repeat:Predicted transporter component:Predicted transporter component:Predicted membrane protein:Predicted membrane protein:phospholipase A2 activity:polygalacturonase activity:calcium ion binding:carbohydrate metabolic process:electron transport:phospholipid metabolic process:lipid catabolic process:hydrolase activity:General function prediction only:General function prediction only:Function unknown:Function unknown:Poorly characterized:Poorly characterized" 208 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Aspartate oxidase:Nicotinate-nucleotide pyrophosphorylase:Nicotinate-nucleotide pyrophosphorylase:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Quinolinate synthase:Quinolinate synthase:Deoxyribodipyrimidine photolyase:Deoxyribodipyrimidine photolyase:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Phytoene dehydrogenase and related proteins:Phytoene dehydrogenase and related proteins:Phytoene/squalene synthetase:Phytoene/squalene synthetase:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Predicted transcriptional regulator with C-terminal CBS domains:Predicted transcriptional regulator with C-terminal CBS domains:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:DNA binding:beta-carotene 15,15'-monooxygenase activity:deoxyribodipyrimidine photo-lyase activity:IMP dehydrogenase activity:subtilase activity:monooxygenase activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:ion channel activity:ATP binding:electron transport:DNA repair:regulation of transcription, DNA-dependent:proteolysis:cellular aromatic compound metabolic process:ion transport:N-acetyltransferase activity:metabolic process:L-aspartate oxidase activity:nitrate reductase activity:quinolinate synthetase A activity:electron carrier activity:biosynthetic process:thiamine biosynthetic process:NAD biosynthetic process:cellular response to phosphate starvation:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Purine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadC:nadC:sensory_box:sensory_box:nadA:nadA:crtI_fam:crtI_fam:CarR_dom_SF:CarR_dom_SF:blh_monoox:blh_monoox:Nucleotide Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Metabolism:Regulatory functions:Pyridine nucleotides:Other:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Global:Metabolism of Terpenoids and Polyketides:Regulatory functions:Small molecule interactions:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Pyridine nucleotides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism" 209 "Glutamine amidotransferase:Glutamine amidotransferase:tRNA and rRNA cytosine-C5-methylases:tRNA and rRNA cytosine-C5-methylases:Phosphate/sulphate permeases:Phosphate/sulphate permeases:Predicted divalent heavy-metal cations transporter:Predicted divalent heavy-metal cations transporter:Carbamoylphosphate synthase small subunit:Carbamoylphosphate synthase small subunit:Superfamily II DNA/RNA helicases, SNF2 family:Superfamily II DNA/RNA helicases, SNF2 family:Uncharacterized conserved protein:Uncharacterized conserved protein:Isopentenyldiphosphate isomerase:Isopentenyldiphosphate isomerase:Transcriptional regulators:Transcriptional regulators:Antitoxin of toxin-antitoxin stability system:Antitoxin of toxin-antitoxin stability system:Predicted NAD/FAD-dependent oxidoreductase:Predicted NAD/FAD-dependent oxidoreductase:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted membrane-bound mannosyltransferase:Predicted membrane-bound mannosyltransferase:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:mannosyltransferase activity:histidine biosynthetic process:DNA binding:sequence-specific DNA binding transcription factor activity:RNA binding:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity:helicase activity:isopentenyl-diphosphate delta-isomerase activity:phospholipase A2 activity:pseudouridylate synthase activity:inorganic phosphate transmembrane transporter activity:calcium ion binding:ATP binding:DNA recombination:regulation of transcription, DNA-dependent:protein O-linked glycosylation:glutamine metabolic process:phospholipid metabolic process:nitrogen compound metabolic process:phosphate ion transport:isoprenoid biosynthetic process:biosynthetic process:pseudouridine synthase activity:DNA integration:lipid catabolic process:oxidoreductase activity:transferase activity, transferring pentosyl groups:hydrolase activity:metal ion transport:tRNA pseudouridine synthesis:sequence-specific DNA binding:metal ion transmembrane transporter activity:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Histidine metabolism:Histidine metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:tRNA_TruD_broad:tRNA_TruD_broad:CPSaseIIsmall:CPSaseIIsmall:IMP_synth_hisH:IMP_synth_hisH:TIGR03663:TIGR03663:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Terpenoids and Polyketides:Amino acid biosynthesis:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Histidine family:tRNA and rRNA base modification:Pyrimidine ribonucleotide biosynthesis:Global:Amino Acid Metabolism:Nucleotide Metabolism:Information storage and processing:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA and rRNA base modification:Amino acid biosynthesis:Histidine family:Information storage and processing" 210 "Cobyric acid synthase:Cobyric acid synthase:TATA-box binding protein (TBP), component of TFIID and TFIIIB:TATA-box binding protein (TBP), component of TFIID and TFIIIB:ATP:corrinoid adenosyltransferase:ATP:corrinoid adenosyltransferase:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted membrane protein:Predicted membrane protein:DNA binding:RNA polymerase II transcription factor activity:ATP binding:regulation of transcription, DNA-dependent:transcription initiation from RNA polymerase II promoter:cob(I)yrinic acid a,c-diamide adenosyltransferase activity:cobalamin biosynthetic process:lyase activity:cobyrinic acid a,c-diamide synthase activity:metal ion binding:adenosylcobyric acid synthase (glutamine-hydrolyzing) activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:Basal transcription factors:Basal transcription factors:Function unknown:Function unknown:cobQ:cobQ:Transcription:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Transcription:Metabolism of Cofactors and Vitamins:Global:Genetic Information Processing:Heme, porphyrin, and cobalamin:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing" 211 "DNA or RNA helicases of superfamily II:DNA or RNA helicases of superfamily II:Uncharacterized conserved protein:Uncharacterized conserved protein:nucleic acid binding:DNA binding:helicase activity:ATP binding:methyltransferase activity:hydrolase activity:methylation:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Function unknown:Function unknown:Information storage and processing:Information storage and processing:Poorly characterized:Poorly characterized" 212 "Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Predicted transporter component:Predicted transporter component:sequence-specific DNA binding transcription factor activity:protein binding:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:zinc ion binding:hydrolase activity:Transcription:Transcription:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:Transcription:Transcription:Information storage and processing:Poorly characterized:Genetic Information Processing:Poorly characterized:Information storage and processing:Genetic Information Processing" 213 "Glycosyltransferase:Glycosyltransferase:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:nucleic acid binding:biosynthetic process:hydrolase activity:manganese ion binding:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:General function prediction only:General function prediction only:Cellular processes and signaling:Poorly characterized:Cellular processes and signaling:Poorly characterized" 214 "GMP synthase - Glutamine amidotransferase domain:GMP synthase - Glutamine amidotransferase domain:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:Isopentenyldiphosphate isomerase:Isopentenyldiphosphate isomerase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Nucleotide transport and metabolism:Nucleotide transport and metabolism:catalytic activity:GMP synthase (glutamine-hydrolyzing) activity:aspartic-type endopeptidase activity:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity:isopentenyl-diphosphate delta-isomerase activity:signal transducer activity:iron ion binding:ATP binding:glutamine metabolic process:Mo-molybdopterin cofactor biosynthetic process:chemotaxis:signal transduction:metabolic process:isoprenoid biosynthetic process:iron-chelate-transporting ATPase activity:oxygen transport:hydrolase activity:oxygen binding:heme binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fatty acid biosynthesis:Fatty acid biosynthesis:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Biosynthesis of unsaturated fatty acids:Biosynthesis of unsaturated fatty acids:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:molyb_syn:molyb_syn:Metabolism:Metabolism:Membrane Transport:Metabolism of Terpenoids and Polyketides:Metabolism:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Lipid Metabolism:Metabolism of Terpenoids and Polyketides:Environmental Information Processing:Membrane Transport:Global:Metabolism:Cellular processes and signaling:Cellular processes and signaling:Poorly characterized:Global:Environmental Information Processing" 215 "K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Predicted transcriptional regulators:Predicted transcriptional regulators:sequence-specific DNA binding transcription factor activity:regulation of transcription, DNA-dependent:potassium ion transport:cation transmembrane transporter activity:sequence-specific DNA binding:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Information storage and processing:Metabolism:Information storage and processing:Metabolism" 216 "Phosphate/sulphate permeases:Phosphate/sulphate permeases:Glutaredoxin and related proteins:Glutaredoxin and related proteins:Predicted transporter component:Predicted transporter component:nucleotide binding:inorganic phosphate transmembrane transporter activity:protein binding:electron transport:phosphate ion transport:electron carrier activity:protein disulfide oxidoreductase activity:cell redox homeostasis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:General function prediction only:General function prediction only:Metabolism:Cellular processes and signaling:Cellular processes and signaling:Poorly characterized:Metabolism:Poorly characterized" 217 "Oxyanion-translocating ATPase:Oxyanion-translocating ATPase:Homoserine acetyltransferase:Homoserine acetyltransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:homoserine O-acetyltransferase activity:ATP binding:anion transport:methionine biosynthetic process:arsenite-transmembrane transporting ATPase activity:antimonite-transporting ATPase activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Sulfur metabolism:Sulfur metabolism:Metabolic pathways:Metabolic pathways:arsA:arsA:homoserO_Ac_trn:homoserO_Ac_trn:Metabolism:Metabolism:Energy Metabolism:Amino Acid Metabolism:Amino Acid Metabolism:Global:Metabolism:Hypothetical proteins:Conserved:Amino acid biosynthesis:Aspartate family:Metabolism:Energy Metabolism:Conserved:Global:Aspartate family:Hypothetical proteins:Amino acid biosynthesis:Metabolism:Metabolism" 218 "Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:hydrolase activity:General function prediction only:General function prediction only:Poorly characterized:Poorly characterized" 219 "Cation transport ATPase:Cation transport ATPase:cation channel activity:ATP binding:metabolic process:cadmium-exporting ATPase activity:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism:metal ion transport:metal ion binding:metal ion transmembrane transporter activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ATPase-IB_hvy:ATPase-IB_hvy:Metabolism:Metabolism" 220 "Uncharacterized conserved protein:Uncharacterized conserved protein:Urocanate hydratase:Urocanate hydratase:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:regulation of DNA replication:regulation of transcription, DNA-dependent:histidine catabolic process:viral reproduction:urocanate hydratase activity:Histidine metabolism:Histidine metabolism:Metabolic pathways:Metabolic pathways:Function unknown:Function unknown:hutU:hutU:Metabolism:Amino Acid Metabolism:Global:Metabolism:Energy metabolism:Amino acids and amines:Metabolism:Poorly characterized:Amino Acid Metabolism:Global:Metabolism:Amino acids and amines:Energy metabolism:Metabolism:Metabolism:Poorly characterized" 221 "Ribosomal protein L14:Ribosomal protein L14:Ribosomal protein S14:Ribosomal protein S14:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Ribosomal protein S4E:Ribosomal protein S4E:Ribosomal protein L30/L7E:Ribosomal protein L30/L7E:RNA binding:structural constituent of ribosome:translation:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Ribosome:Ribosome:L30P_arch:L30P_arch:tspaseT_teng_C:tspaseT_teng_C:rpl14p_arch:rpl14p_arch:Transposon functions:Information storage and processing:Ribosomal proteins: synthesis and modification:Genetic Information Processing:Translation:Mobile and extrachromosomal element functions:Protein synthesis:Transposon functions:Information storage and processing:Genetic Information Processing:Translation:Protein synthesis:Ribosomal proteins: synthesis and modification:Mobile and extrachromosomal element functions" 222 "Transposase and inactivated derivatives:Transposase and inactivated derivatives:DNA binding:transposase activity:transposition, DNA-mediated:Replication, recombination and repair:Replication, recombination and repair:Information storage and processing:Information storage and processing" 223 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Aspartate oxidase:Phosphoglycerate dehydrogenase and related dehydrogenases:Phosphoglycerate dehydrogenase and related dehydrogenases:Nicotinate-nucleotide pyrophosphorylase:Nicotinate-nucleotide pyrophosphorylase:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Quinolinate synthase:Quinolinate synthase:Deoxyribodipyrimidine photolyase:Deoxyribodipyrimidine photolyase:Aspartate/tyrosine/aromatic aminotransferase:Aspartate/tyrosine/aromatic aminotransferase:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Amino acid transporters:Amino acid transporters:Peroxiredoxin:Peroxiredoxin:Phytoene dehydrogenase and related proteins:Phytoene dehydrogenase and related proteins:Phytoene/squalene synthetase:Phytoene/squalene synthetase:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:Amino acid transport and metabolism:Amino acid transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:beta-carotene 15,15'-monooxygenase activity:deoxyribodipyrimidine photo-lyase activity:L-aspartate:2-oxoglutarate aminotransferase activity:subtilase activity:monooxygenase activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:phosphoglycerate dehydrogenase activity:ion channel activity:ATP binding:electron transport:DNA repair:regulation of transcription, DNA-dependent:proteolysis:cellular aromatic compound metabolic process:ion transport:amino acid transport:response to stress:N-acetyltransferase activity:metabolic process:L-aspartate oxidase activity:nitrate reductase activity:quinolinate synthetase A activity:electron carrier activity:biosynthetic process:thiamine biosynthetic process:NAD biosynthetic process:amino acid transmembrane transporter activity:cellular response to phosphate starvation:antioxidant activity:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:transferase activity, transferring nitrogenous groups:1-aminocyclopropane-1-carboxylate synthase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:pyridoxal phosphate binding:chaperone mediated protein folding requiring cofactor:NAD binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadC:nadC:sensory_box:sensory_box:nadA:nadA:crtI_fam:crtI_fam:blh_monoox:blh_monoox:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Regulatory functions:Pyridine nucleotides:Other:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Regulatory functions:Small molecule interactions:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Pyridine nucleotides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Global" 224 "Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain:Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Cation transport ATPase:Cation transport ATPase:DNA binding:cation channel activity:ATP binding:GTP binding:DNA recombination:regulation of transcription, DNA-dependent:SRP-dependent cotranslational protein targeting to membrane:metabolic process:7S RNA binding:cadmium-exporting ATPase activity:DNA integration:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism:ATPase activity:metal ion transport:metal ion binding:metal ion transmembrane transporter activity:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ATPase-IB_hvy:ATPase-IB_hvy:Defense mechanisms:Defense mechanisms:Information storage and processing:Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Cellular processes and signaling" 225 "ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ABC-type transport system involved in Fe-S cluster assembly, permease component:ABC-type transport system involved in Fe-S cluster assembly, permease component:Signal transduction histidine kinase:Signal transduction histidine kinase:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):protein binding:ATP binding:regulation of transcription, DNA-dependent:transport:iron-sulfur cluster assembly:ATPase activity:peptidyl-histidine phosphorylation:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:sufB:sufB:sufD:sufD:Other:Cellular processes and signaling:Regulatory functions:Other:Small molecule interactions:Cellular processes and signaling:Biosynthesis of cofactors, prosthetic groups, and carriers:Regulatory functions:Small molecule interactions:Biosynthesis of cofactors, prosthetic groups, and carriers" 226 "Energy production and conversion:Energy production and conversion:ABC-type phosphate transport system, periplasmic component:ABC-type phosphate transport system, periplasmic component:ABC-type Co2+ transport system, permease component:ABC-type Co2+ transport system, permease component:Protein-tyrosine-phosphatase:Protein-tyrosine-phosphatase:ABC-type sugar transport system, permease component:ABC-type sugar transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type cobalt transport system, permease component CbiQ and related transporters:ABC-type cobalt transport system, permease component CbiQ and related transporters:Phosphate uptake regulator:Phosphate uptake regulator:Na+-dependent transporters of the SNF family:Na+-dependent transporters of the SNF family:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type phosphate transport system, ATPase component:ABC-type phosphate transport system, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:Uncharacterized conserved protein containing a ferredoxin-like domain:Uncharacterized conserved protein containing a ferredoxin-like domain:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type sugar transport systems, permease components:ABC-type sugar transport systems, permease components:Micrococcal nuclease (thermonuclease) homologs:Micrococcal nuclease (thermonuclease) homologs:Alkaline phosphatase:Alkaline phosphatase:ABC-type cobalt transport system, periplasmic component:ABC-type cobalt transport system, periplasmic component:Plastocyanin:Plastocyanin:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleic acid binding:sequence-specific DNA binding transcription factor activity:alkaline phosphatase activity:metalloendopeptidase activity:nuclease activity:protein tyrosine phosphatase activity:transporter activity:inorganic phosphate transmembrane transporter activity:neurotransmitter:sodium symporter activity:binding:copper ion binding:ATP binding:electron transport:regulation of transcription, DNA-dependent:protein dephosphorylation:proteolysis:transport:phosphate ion transport:cobalt ion transport:neurotransmitter transport:metabolic process:electron carrier activity:cobalamin biosynthetic process:folic acid-containing compound biosynthetic process:cobalt ion transmembrane transporter activity:peptide transporter activity:phosphate ion transmembrane-transporting ATPase activity:peptide transport:specific transcriptional repressor activity:ATPase activity:5-formyltetrahydrofolate cyclo-ligase activity:ATPase activity, coupled to transmembrane movement of substances:negative regulation of transcription, DNA-dependent:iron-sulfur cluster binding:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Aminobenzoate degradation:Aminobenzoate degradation:Folate biosynthesis:Folate biosynthesis:Metabolic pathways:Metabolic pathways:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Two-component system:Two-component system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:cbiM:cbiM:3a0107s01c2:3a0107s01c2:3a0107s02c:3a0107s02c:oligo_HPY:oligo_HPY:phoU_full:phoU_full:ptsS_2:ptsS_2:phosphate_pstC:phosphate_pstC:CbiQ_TIGR:CbiQ_TIGR:Metabolism:Cellular processes and signaling:Information storage and processing:Metabolism of Cofactors and Vitamins:Biosynthesis of cofactors, prosthetic groups, and carriers:Environmental Information Processing:Heme, porphyrin, and cobalamin:Cations and iron carrying compounds:Anions:Amino acids, peptides and amines:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Membrane Transport:Transport and binding proteins:Signal Transduction:Xenobiotics Biodegradation and Metabolism:Global:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Transport and binding proteins:Amino acids, peptides and amines:Anions:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized" 227 "Energy production and conversion:Energy production and conversion:Cell division GTPase:Cell division GTPase:ABC-type Co2+ transport system, permease component:ABC-type Co2+ transport system, permease component:ABC-type cobalt transport system, permease component CbiQ and related transporters:ABC-type cobalt transport system, permease component CbiQ and related transporters:Precorrin-3B methylase:Precorrin-3B methylase:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit A:Archaeal/vacuolar-type H+-ATPase subunit B:Archaeal/vacuolar-type H+-ATPase subunit B:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit I:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit E:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit F:Archaeal/vacuolar-type H+-ATPase subunit C:Archaeal/vacuolar-type H+-ATPase subunit C:RNase P/RNase MRP subunit p29:RNase P/RNase MRP subunit p29:Cobalamin biosynthesis protein CbiG:Cobalamin biosynthesis protein CbiG:Uncharacterized conserved protein:Uncharacterized conserved protein:Precorrin-6B methylase 2:Precorrin-6B methylase 2:Precorrin-2 methylase:Precorrin-2 methylase:Precorrin-4 methylase:Precorrin-4 methylase:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:hydrogen-transporting two-sector ATPase activity:ribonuclease P activity:structural molecule activity:ATP binding:GTP binding:electron transport:cobalt ion transport:microtubule-based process:tRNA processing:metabolic process:protein methyltransferase activity:cobalamin biosynthetic process:cobalt ion transmembrane transporter activity:ATP synthesis coupled proton transport:proton transport:oxidoreductase activity:lyase activity:precorrin-2 C20-methyltransferase activity:precorrin-3B C17-methyltransferase activity:gas vesicle organization:precorrin-6Y C5,15-methyltransferase (decarboxylating) activity:precorrin-4 C11-methyltransferase activity:metal ion binding:hydrogen ion transporting ATP synthase activity, rotational mechanism:proton-transporting ATPase activity, rotational mechanism:NAD binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Methane metabolism:Methane metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:ABC transporters:ABC transporters:Function unknown:Function unknown:cbiM:cbiM:ATP_syn_B_arch:ATP_syn_B_arch:ATP_syn_A_arch:ATP_syn_A_arch:cobJ_cbiH:cobJ_cbiH:CbiQ_TIGR:CbiQ_TIGR:CbiT:CbiT:AhaC:AhaC:AhaH:AhaH:Biosynthesis of cofactors, prosthetic groups, and carriers:Cations and iron carrying compounds:ATP-proton motive force interconversion:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Metabolism of Cofactors and Vitamins:Energy Metabolism:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Transport and binding proteins:Energy metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:ATP-proton motive force interconversion:Transport and binding proteins:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 228 "" 229 "Glutaredoxin and related proteins:Glutaredoxin and related proteins:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Peroxiredoxin:Peroxiredoxin:Bacteriorhodopsin:Bacteriorhodopsin:signal transducer activity:ion channel activity:protein binding:electron transport:regulation of transcription, DNA-dependent:ion transport:chemotaxis:signal transduction:electron carrier activity:protein disulfide oxidoreductase activity:vesicle-mediated transport:antioxidant activity:oxidoreductase activity:cell redox homeostasis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:Poorly characterized:Cellular processes and signaling:Poorly characterized:Cellular processes and signaling" 230 "Undecaprenyl pyrophosphate synthase:Undecaprenyl pyrophosphate synthase:Amino acid transporters:Amino acid transporters:Amino acid transport and metabolism:Amino acid transport and metabolism:sequence-specific DNA binding transcription factor activity:regulation of transcription, DNA-dependent:amino acid transport:response to stress:metabolic process:di-trans,poly-cis-decaprenylcistransferase activity:amino acid transmembrane transporter activity:Lipid transport and metabolism:Lipid transport and metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:uppS:uppS:Metabolism:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Global:Metabolism:Metabolism" 231 "nucleic acid binding:methyltransferase activity:methylation" 232 "Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted integral membrane protein:Predicted integral membrane protein:Predicted ATPase:Predicted ATPase:Na+/proline symporter:Na+/proline symporter:Predicted aminopeptidases:Predicted aminopeptidases:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:transporter activity:DNA recombination:proteolysis:transport:metabolic process:peptidase activity:DNA integration:oxidoreductase activity, acting on the CH-CH group of donors:Replication, recombination and repair:Replication, recombination and repair:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00374:TIGR00374:F420_cofD:F420_cofD:crt_membr_arch:crt_membr_arch:Information storage and processing:Conserved:Hypothetical proteins:Conserved:Hypothetical proteins:Poorly characterized:Metabolism:Poorly characterized:Information storage and processing:Metabolism" 233 "Short-chain dehydrogenases of various substrate specificities:Short-chain dehydrogenases of various substrate specificities:Deoxyinosine 3'endonuclease (endonuclease V):Deoxyinosine 3'endonuclease (endonuclease V):Membrane protein involved in the export of O-antigen and teichoic acid:Membrane protein involved in the export of O-antigen and teichoic acid:polysaccharide biosynthetic process:DNA repair:drug transmembrane transport:metabolic process:drug transmembrane transporter activity:antiporter activity:oxidoreductase activity:deoxyribonuclease V activity:Replication, recombination and repair:Replication, recombination and repair:General function prediction only:General function prediction only:Poorly characterized:Information storage and processing:Information storage and processing:Poorly characterized" 234 "Undecaprenyl pyrophosphate synthase:Undecaprenyl pyrophosphate synthase:Dephospho-CoA kinase:Dephospho-CoA kinase:SAM-dependent methyltransferases:SAM-dependent methyltransferases:GMP synthase - Glutamine amidotransferase domain:GMP synthase - Glutamine amidotransferase domain:Isopentenyldiphosphate isomerase:Isopentenyldiphosphate isomerase:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleic acid binding:catalytic activity:GMP synthase (glutamine-hydrolyzing) activity:isopentenyl-diphosphate delta-isomerase activity:DNA modification:protein methylation:glutamine metabolic process:metabolic process:methyltransferase activity:protein methyltransferase activity:isoprenoid biosynthetic process:lipid biosynthetic process:cyclopropane-fatty-acyl-phospholipid synthase activity:di-trans,poly-cis-decaprenylcistransferase activity:hydrolase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:uppS:uppS:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Cell envelope:Metabolism:Poorly characterized:Metabolism:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Metabolism:Poorly characterized:Global" 235 "Energy production and conversion:Energy production and conversion:Fe-S oxidoreductase:Fe-S oxidoreductase:sequence-specific DNA binding transcription factor activity:electron transport:regulation of transcription, DNA-dependent:electron carrier activity:iron-sulfur cluster binding:Metabolism:Metabolism" 236 "Energy production and conversion:Energy production and conversion:Prolyl-tRNA synthetase:Prolyl-tRNA synthetase:RecA/RadA recombinase:RecA/RadA recombinase:Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain:Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain:Chromosome segregation ATPases:Chromosome segregation ATPases:Uncharacterized conserved protein:Uncharacterized conserved protein:Holliday junction resolvase - archaeal type:Holliday junction resolvase - archaeal type:DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger):DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger):Ribosomal protein L37AE/L43A:Ribosomal protein L37AE/L43A:Succinate dehydrogenase/fumarate reductase, cytochrome b subunit:Succinate dehydrogenase/fumarate reductase, cytochrome b subunit:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:succinate dehydrogenase activity:DNA binding:damaged DNA binding:RNA binding:structural constituent of ribosome:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:nuclease activity:proline-tRNA ligase activity:protein binding:ATP binding:tricarboxylic acid cycle:electron transport:DNA metabolic process:DNA repair:DNA recombination:transcription, DNA-dependent:translation:prolyl-tRNA aminoacylation:DNA-dependent ATPase activity:hydrolase activity:manganese ion binding:sequence-specific DNA binding:chromosome organization:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Butanoate metabolism:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:RNA polymerase:RNA polymerase:Function unknown:Function unknown:L37a:L37a:proS_fam_I:proS_fam_I:SMC_prok_B:SMC_prok_B:recomb_radA:recomb_radA:succ_dehyd_cytB:succ_dehyd_cytB:Global:Metabolism:Energy metabolism:tRNA aminoacylation:DNA metabolism:DNA replication, recombination, and repair:Chromosome-associated proteins:Protein synthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy Metabolism:Carbohydrate Metabolism:TCA cycle:Ribosomal proteins: synthesis and modification:Energy metabolism:DNA metabolism:Protein synthesis:Chromosome-associated proteins:DNA replication, recombination, and repair:TCA cycle:Global:Genetic Information Processing:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Energy Metabolism:Translation:Nucleotide Metabolism:Transcription:Nucleotide Metabolism:Genetic Information Processing:Transcription:Translation" 237 "Energy production and conversion:Energy production and conversion:ABC-type cobalt transport system, ATPase component:ABC-type cobalt transport system, ATPase component:Plastocyanin:Plastocyanin:copper ion binding:ATP binding:electron transport:cobalt ion transport:electron carrier activity:ATPase activity:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:ABC transporters:cbiO:cbiO:Membrane Transport:Environmental Information Processing:Transport and binding proteins:Cations and iron carrying compounds:Metabolism:Cations and iron carrying compounds:Transport and binding proteins:Metabolism:Membrane Transport:Environmental Information Processing" 238 "Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Transcriptional regulators:Transcriptional regulators:Site-specific recombinase XerD:Site-specific recombinase XerD:DNA binding:sequence-specific DNA binding transcription factor activity:ATP binding:DNA recombination:regulation of transcription, DNA-dependent:DNA integration:nucleoside-triphosphatase activity:sequence-specific DNA binding:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:TIGR02928:TIGR02928:Cellular processes and signaling:DNA replication, recombination, and repair:DNA metabolism:Cellular processes and signaling:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing" 239 "DNA or RNA helicases of superfamily II:DNA or RNA helicases of superfamily II:Uncharacterized conserved protein:Uncharacterized conserved protein:nucleic acid binding:DNA binding:helicase activity:ATP binding:methyltransferase activity:hydrolase activity:methylation:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Function unknown:Function unknown:Information storage and processing:Information storage and processing:Poorly characterized:Poorly characterized" 240 "Energy production and conversion:Energy production and conversion:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:ATPases of the AAA+ class:ATPases of the AAA+ class:ATP binding:DNA repair:DNA recombination:four-way junction helicase activity:oxidoreductase activity:nucleoside-triphosphatase activity:molybdenum ion binding:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:CDC48:CDC48:Metabolism:Metabolism:Cellular processes and signaling:Cellular processes and signaling" 241 "Predicted archaeal kinase (sugar kinase superfamily):Predicted archaeal kinase (sugar kinase superfamily):Predicted metal-dependent hydrolase:Predicted metal-dependent hydrolase:ATP binding:N-acetyltransferase activity:metabolic process:kinase activity:phosphorylation:General function prediction only:General function prediction only:Poorly characterized:Poorly characterized" 242 "IMP dehydrogenase/GMP reductase:IMP dehydrogenase/GMP reductase:Uncharacterized Zn-finger containing protein:Uncharacterized Zn-finger containing protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Predicted membrane protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:IMP dehydrogenase activity:GMP biosynthetic process:Purine metabolism:Purine metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:IMP_dehydrog:IMP_dehydrog:Purine ribonucleotide biosynthesis:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Purine ribonucleotide biosynthesis:Global:Purines, pyrimidines, nucleosides, and nucleotides:Metabolism:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides" 243 "Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted integral membrane protein:Predicted integral membrane protein:Predicted ATPase:Predicted ATPase:Na+/proline symporter:Na+/proline symporter:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Chitinase:Chitinase:Predicted membrane-bound mannosyltransferase:Predicted membrane-bound mannosyltransferase:Site-specific recombinase XerD:Site-specific recombinase XerD:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:mannosyltransferase activity:DNA binding:peroxidase activity:phospholipase A2 activity:transporter activity:calcium ion binding:chitin catabolic process:electron transport:DNA recombination:protein O-linked glycosylation:phospholipid metabolic process:transport:response to oxidative stress:endochitinase activity:DNA integration:lipid catabolic process:hydrolase activity:heme binding:carbohydrate binding:cation binding:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00374:TIGR00374:F420_cofD:F420_cofD:TIGR03663:TIGR03663:Metabolism:Hypothetical proteins:Conserved:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Hypothetical proteins:Conserved:Poorly characterized" 244 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Aspartate oxidase:Phosphoglycerate dehydrogenase and related dehydrogenases:Phosphoglycerate dehydrogenase and related dehydrogenases:Nicotinate-nucleotide pyrophosphorylase:Nicotinate-nucleotide pyrophosphorylase:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Amino acid transporters:Amino acid transporters:Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Predicted RNA-binding protein:Predicted RNA-binding protein:Phytoene/squalene synthetase:Phytoene/squalene synthetase:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:Amino acid transport and metabolism:Amino acid transport and metabolism:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:beta-carotene 15,15'-monooxygenase activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:phosphoglycerate dehydrogenase activity:ion channel activity:ATP binding:electron transport:regulation of transcription, DNA-dependent:ion transport:amino acid transport:response to stress:N-acetyltransferase activity:metabolic process:L-aspartate oxidase activity:nitrate reductase activity:electron carrier activity:biosynthetic process:NAD biosynthetic process:amino acid transmembrane transporter activity:cellular response to phosphate starvation:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:chaperone mediated protein folding requiring cofactor:NAD binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadC:nadC:sensory_box:sensory_box:CarR_dom_SF:CarR_dom_SF:blh_monoox:blh_monoox:Pyridine nucleotides:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Regulatory functions:Small molecule interactions:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Regulatory functions" 245 "Uncharacterized conserved protein:Uncharacterized conserved protein:zinc ion binding:Function unknown:Function unknown:Poorly characterized:Poorly characterized" 246 "3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:Na+/proline symporter:Na+/proline symporter:Metal-dependent hydrolases of the beta-lactamase superfamily III:Metal-dependent hydrolases of the beta-lactamase superfamily III:Transcriptional regulators:Transcriptional regulators:Amino acid transport and metabolism:Amino acid transport and metabolism:sequence-specific DNA binding transcription factor activity:alkylbase DNA N-glycosylase activity:transporter activity:base-excision repair:regulation of transcription, DNA-dependent:transport:hydrolase activity:sequence-specific DNA binding:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Base excision repair:Base excision repair:General function prediction only:General function prediction only:sss:sss:Replication and Repair:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Metabolism:Poorly characterized:Genetic Information Processing:Poorly characterized:Metabolism:Information storage and processing:Transport and binding proteins:Cations and iron carrying compounds:Genetic Information Processing:Replication and Repair" 247 "Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Restriction endonuclease S subunits:Restriction endonuclease S subunits:Predicted metal-dependent hydrolase:Predicted metal-dependent hydrolase:DNA binding:helicase activity:ATP binding:DNA modification:Type I site-specific deoxyribonuclease activity:DNA restriction-modification system:regulation of cell cycle:General function prediction only:General function prediction only:hsdR:hsdR:Defense mechanisms:Defense mechanisms:Restriction/modification:Cellular processes and signaling:Poorly characterized:Cellular processes and signaling:DNA metabolism:Restriction/modification:Poorly characterized:DNA metabolism" 248 "" 249 "Tryptophan synthase beta chain:Tryptophan synthase beta chain:Tryptophan synthase alpha chain:Tryptophan synthase alpha chain:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn2+/Zn2+ transport systems, permease components:ABC-type Mn/Zn transport systems, ATPase component:ABC-type Mn/Zn transport systems, ATPase component:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Site-specific recombinase XerC:Site-specific recombinase XerC:Amino acid transport and metabolism:Amino acid transport and metabolism:DNA binding:tryptophan synthase activity:transporter activity:sugar:hydrogen symporter activity:binding:ATP binding:DNA recombination:tryptophan metabolic process:transport:DNA integration:ATPase activity:pyridoxal phosphate binding:ATPase activity, coupled to transmembrane movement of substances:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:ABC transporters:ABC transporters:trpA:trpA:trpB:trpB:Defense mechanisms:Defense mechanisms:Membrane Transport:Amino Acid Metabolism:Membrane Transport:Metabolism:Metabolism:Environmental Information Processing:Global:Aromatic amino acid family:Amino acid biosynthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Amino Acid Metabolism:Environmental Information Processing:Global:Metabolism:Amino acid biosynthesis:Aromatic amino acid family:Information storage and processing:Cellular processes and signaling:Metabolism" 250 "Uncharacterized conserved protein:Uncharacterized conserved protein:sequence-specific DNA binding transcription factor activity:protein binding:transcription, DNA-dependent:Function unknown:Function unknown:Poorly characterized:Poorly characterized" 251 "Thymidylate kinase:Thymidylate kinase:DNA mismatch repair enzyme (predicted ATPase):DNA mismatch repair enzyme (predicted ATPase):Nucleotidyltransferase/DNA polymerase involved in DNA repair:Nucleotidyltransferase/DNA polymerase involved in DNA repair:FOG: CBS domain:FOG: CBS domain:Organic radical activating enzymes:Organic radical activating enzymes:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:Predicted membrane-associated Zn-dependent proteases 1:Predicted membrane-associated Zn-dependent proteases 1:Superfamily I DNA and RNA helicases and helicase subunits:Superfamily I DNA and RNA helicases and helicase subunits:Glycosyltransferases, probably involved in cell wall biogenesis:Glycosyltransferases, probably involved in cell wall biogenesis:Transcriptional regulators:Transcriptional regulators:Pyrimidine reductase, riboflavin biosynthesis:Pyrimidine reductase, riboflavin biosynthesis:Sugar phosphate permease:Sugar phosphate permease:Arylsulfatase A and related enzymes:Arylsulfatase A and related enzymes:Predicted aminoglycoside phosphotransferase:Predicted aminoglycoside phosphotransferase:Predicted DNA binding protein:Predicted DNA binding protein:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Predicted O-methyltransferase:Predicted O-methyltransferase:Predicted acyltransferase:Predicted acyltransferase:Predicted transcriptional regulator:Predicted transcriptional regulator:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleic acid binding:sequence-specific DNA binding transcription factor activity:catalytic activity:DNA-directed DNA polymerase activity:cysteine-type endopeptidase activity:metalloendopeptidase activity:thymidylate kinase activity:signal transducer activity:transporter activity:protein binding:ATP binding:dTDP biosynthetic process:dTTP biosynthetic process:DNA repair:mismatch repair:regulation of transcription, DNA-dependent:proteolysis:transport:potassium ion transport:signal transduction:metabolic process:O-methyltransferase activity:zinc ion binding:cation transmembrane transporter activity:sulfuric ester hydrolase activity:5-amino-6-(5-phosphoribosylamino)uracil reductase activity:riboflavin biosynthetic process:transferase activity:transferase activity, transferring acyl groups:hydrolase activity:manganese ion binding:mismatched DNA binding:sequence-specific DNA binding:NADP binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Riboflavin metabolism:Riboflavin metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:DTMP_kinase:DTMP_kinase:ribD_Cterm:ribD_Cterm:sensory_box:sensory_box:mutl:mutl:Metabolism:Poorly characterized:Purines, pyrimidines, nucleosides, and nucleotides:Metabolism:Metabolism:Small molecule interactions:Metabolism:Global:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Global:Nucleotide and nucleoside interconversions:DNA metabolism:Regulatory functions:DNA replication, recombination, and repair:Purines, pyrimidines, nucleosides, and nucleotides:Regulatory functions:Nucleotide and nucleoside interconversions:Small molecule interactions:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling" 252 "Energy production and conversion:Energy production and conversion:Glutamyl- and glutaminyl-tRNA synthetases:Glutamyl- and glutaminyl-tRNA synthetases:Phenylalanyl-tRNA synthetase beta subunit:Phenylalanyl-tRNA synthetase beta subunit:4-hydroxybenzoate polyprenyltransferase and related prenyltransferases:4-hydroxybenzoate polyprenyltransferase and related prenyltransferases:Glycosyltransferase:Glycosyltransferase:Glycerol-3-phosphate dehydrogenase:Glycerol-3-phosphate dehydrogenase:Phosphoglyceromutase:Phosphoglyceromutase:MoxR-like ATPases:MoxR-like ATPases:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Peroxiredoxin:Peroxiredoxin:Predicted metal-dependent hydrolase:Predicted metal-dependent hydrolase:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted membrane protein:Predicted membrane protein:Predicted ATPases of PP-loop superfamily:Predicted ATPases of PP-loop superfamily:Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding):Outer membrane lipoprotein-sorting protein:Outer membrane lipoprotein-sorting protein:Histidine ammonia-lyase:Histidine ammonia-lyase:Uncharacterized protein related to deoxyribodipyrimidine photolyase:Uncharacterized protein related to deoxyribodipyrimidine photolyase:Predicted DNA binding protein:Predicted DNA binding protein:Signal transduction histidine kinase, nitrogen specific:Signal transduction histidine kinase, nitrogen specific:Acyl CoA:acetate/3-ketoacid CoA transferase:Acyl CoA:acetate/3-ketoacid CoA transferase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:sequence-specific DNA binding transcription factor activity:catalytic activity:DNA photolyase activity:glycerol-3-phosphate dehydrogenase activity:histidine ammonia-lyase activity:methylmalonyl-CoA mutase activity:prenyltransferase activity:protein histidine kinase activity:glutamate-tRNA ligase activity:phenylalanine-tRNA ligase activity:signal transducer activity:inorganic phosphate transmembrane transporter activity:ATP binding:glucose catabolic process:glycerol-3-phosphate metabolic process:DNA repair:DNA recombination:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:glutamyl-tRNA aminoacylation:phenylalanyl-tRNA aminoacylation:cellular amino acid metabolic process:histidine catabolic process:glycerol ether metabolic process:phosphate ion transport:chemotaxis:signal transduction:metabolic process:CoA-transferase activity:electron carrier activity:biosynthetic process:protein disulfide oxidoreductase activity:DNA integration:antioxidant activity:ammonia ligase activity:oxidoreductase activity:ATPase activity:sigma factor activity:peptidyl-histidine phosphorylation:manganese ion binding:cobalamin binding:cellular metabolic process:cell redox homeostasis:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity:metal ion binding:coenzyme binding:peroxiredoxin activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Ubiquinone and other terpenoid-quinone biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Histidine metabolism:Histidine metabolism:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Propanoate metabolism:Propanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Nitrogen metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:MJ0570_dom:MJ0570_dom:gltX_arch:gltX_arch:pheT_arch:pheT_arch:acid_CoA_mut_C:acid_CoA_mut_C:hutH:hutH:pgm_bpd_ind:pgm_bpd_ind:Small molecule interactions:Glycolysis/gluconeogenesis:Amino acids and amines:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Carbohydrate Metabolism:Lipid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Cellular processes and signaling:Amino Acid Metabolism:Information storage and processing:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Global:Metabolism:Energy metabolism:Amino acids and amines:Glycolysis/gluconeogenesis:Regulatory functions:Small molecule interactions:Protein synthesis:tRNA aminoacylation:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein synthesis:Regulatory functions:Energy metabolism:tRNA aminoacylation" 253 "Glutamate decarboxylase and related PLP-dependent proteins:Glutamate decarboxylase and related PLP-dependent proteins:Transcription antiterminator:Transcription antiterminator:Uncharacterized conserved protein:Uncharacterized conserved protein:Asparagine synthase (glutamine-hydrolyzing):Asparagine synthase (glutamine-hydrolyzing):Metal-dependent proteases with possible chaperone activity:Metal-dependent proteases with possible chaperone activity:Predicted metal-dependent phosphoesterases (PHP family):Predicted metal-dependent phosphoesterases (PHP family):Cytidylate kinase:Cytidylate kinase:Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain:Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain:DNA-directed RNA polymerase, subunit L:DNA-directed RNA polymerase, subunit L:Predicted membrane protein:Predicted membrane protein:Methylmalonyl-CoA mutase, N-terminal domain/subunit:Methylmalonyl-CoA mutase, N-terminal domain/subunit:Ribosomal protein S27AE:Ribosomal protein S27AE:Uncharacterized protein (ATP-grasp superfamily):Uncharacterized protein (ATP-grasp superfamily):Protein-L-isoaspartate carboxylmethyltransferase:Protein-L-isoaspartate carboxylmethyltransferase:Predicted RNA-binding protein, contains TRAM domain:Predicted RNA-binding protein, contains TRAM domain:Predicted DNA binding protein:Predicted DNA binding protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted flavin-nucleotide-binding protein:Predicted flavin-nucleotide-binding protein:ABC-type spermidine/putrescine transport systems, ATPase components:ABC-type spermidine/putrescine transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:DNA binding:transcription elongation regulator activity:structural constituent of ribosome:translation initiation factor activity:catalytic activity:DNA-directed DNA polymerase activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:asparagine synthase (glutamine-hydrolyzing) activity:cytidylate kinase activity:methylmalonyl-CoA mutase activity:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity:shikimate kinase activity:transporter activity:ATP binding:nucleobase-containing compound metabolic process:DNA replication:transcription, DNA-dependent:regulation of transcription, DNA-dependent:translation:translational initiation:protein modification process:proteolysis:asparagine biosynthetic process:transport:metabolic process:zinc ion binding:O-sialoglycoprotein endopeptidase activity:FMN binding:hydrolase activity:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances:carboxy-lyase activity:ATPase activity:nucleoside-triphosphatase activity:carboxylic acid metabolic process:pyridoxal phosphate binding:phosphopantetheine binding:cobalamin binding:protein dimerization activity:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Tyrosine metabolism:Tyrosine metabolism:Propanoate metabolism:Propanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Ribosome:Ribosome:RNA polymerase:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00162:TIGR00162:gcp_kae1:gcp_kae1:L26e_arch:L26e_arch:YbgI_SA1388:YbgI_SA1388:acid_CoA_mut_N:acid_CoA_mut_N:fkbM_fam:fkbM_fam:cyt_kin_arch:cyt_kin_arch:tyr_de_CO2_Arch:tyr_de_CO2_Arch:Protein fate:Protein synthesis:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Degradation of proteins, peptides, and glycopeptides:Hypothetical proteins:Conserved:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Other:General:Conserved:Degradation of proteins, peptides, and glycopeptides:Carbohydrate Metabolism:Ribosomal proteins: synthesis and modification:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Translation:Transcription:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism:Poorly characterized:Amino Acid Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Genetic Information Processing:Transcription:Translation:Biosynthesis of cofactors, prosthetic groups, and carriers:Environmental Information Processing:Membrane Transport:Unknown function:Global:Metabolism:Hypothetical proteins" 254 "Arginase/agmatinase/formimionoglutamate hydrolase, arginase family:Arginase/agmatinase/formimionoglutamate hydrolase, arginase family:Molybdopterin biosynthesis enzyme:Molybdopterin biosynthesis enzyme:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Nucleoside-diphosphate-sugar epimerases:Nucleoside-diphosphate-sugar epimerases:Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Glycine/D-amino acid oxidases (deaminating):Glycine/D-amino acid oxidases (deaminating):UDP-glucose 4-epimerase:UDP-glucose 4-epimerase:ABC-type multidrug transport system, ATPase and permease components:ABC-type multidrug transport system, ATPase and permease components:Imidazolonepropionase and related amidohydrolases:Imidazolonepropionase and related amidohydrolases:Uncharacterized protein, putative amidase:Uncharacterized protein, putative amidase:Fibrillarin-like rRNA methylase:Fibrillarin-like rRNA methylase:Predicted metal-dependent hydrolase of the TIM-barrel fold:Predicted metal-dependent hydrolase of the TIM-barrel fold:Cation transport ATPase:Cation transport ATPase:Predicted membrane protein:Predicted membrane protein:Molybdenum cofactor biosynthesis enzyme:Molybdenum cofactor biosynthesis enzyme:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted transcriptional regulator:Predicted transcriptional regulator:Predicted DNA binding protein:Predicted DNA binding protein:Predicted integral membrane protein:Predicted integral membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:DNA binding:sequence-specific DNA binding transcription factor activity:RNA binding:catalytic activity:UDP-glucose 4-epimerase activity:copper-exporting ATPase activity:helicase activity:monooxygenase activity:hormone activity:ATP binding:carbohydrate metabolic process:electron transport:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:rRNA processing:histidine catabolic process:cellular aromatic compound metabolic process:Mo-molybdopterin cofactor biosynthetic process:transport:sarcosine oxidase activity:metabolic process:cellular amino acid biosynthetic process:o-succinylbenzoate-CoA ligase activity:Type I site-specific deoxyribonuclease activity:biosynthetic process:DNA restriction-modification system:disulfide oxidoreductase activity:oxidoreductase activity:specific transcriptional repressor activity:hydro-lyase activity:sigma factor activity:histidine catabolic process to glutamate and formamide:metal ion transport:ATPase activity, coupled to transmembrane movement of substances:cellular metabolic process:negative regulation of transcription, DNA-dependent:metal ion binding:metal ion transmembrane transporter activity:creatininase activity:formimidoylglutamase activity:imidazolonepropionase activity:coenzyme binding:4 iron, 4 sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Galactose metabolism:Galactose metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Histidine metabolism:Histidine metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Sulfur relay system:Sulfur relay system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:molyb_syn:molyb_syn:hsdR:hsdR:hutI:hutI:hutG:hutG:ATPase-IB_hvy:ATPase-IB_hvy:moaA_archaeal:moaA_archaeal:Defense mechanisms:Defense mechanisms:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:DNA metabolism:Energy metabolism:Molybdopterin:Restriction/modification:Amino acids and amines:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Genetic Information Processing:Carbohydrate Metabolism:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Global:Metabolism:Amino Acid Metabolism:Carbohydrate Metabolism:Energy metabolism:Amino acids and amines:DNA metabolism:Restriction/modification:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism" 255 "Energy production and conversion:Energy production and conversion:Uncharacterized conserved protein:Uncharacterized conserved protein:Phenylalanyl-tRNA synthetase alpha subunit:Phenylalanyl-tRNA synthetase alpha subunit:Glutamine phosphoribosylpyrophosphate amidotransferase:Glutamine phosphoribosylpyrophosphate amidotransferase:Fumarase:Fumarase:Seryl-tRNA synthetase:Seryl-tRNA synthetase:Cell division GTPase:Cell division GTPase:Cytidine deaminase:Cytidine deaminase:Predicted glutamine amidotransferase involved in pyridoxine biosynthesis:Predicted glutamine amidotransferase involved in pyridoxine biosynthesis:Uridylate kinase:Uridylate kinase:Single-stranded DNA-specific exonuclease:Single-stranded DNA-specific exonuclease:Dehydrogenases (flavoproteins):Dehydrogenases (flavoproteins):Uncharacterized membrane protein (homolog of Drosophila rhomboid):Uncharacterized membrane protein (homolog of Drosophila rhomboid):Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Phosphomannomutase:Phosphomannomutase:Predicted membrane protein:Predicted membrane protein:Signal recognition particle 19 kDa protein:Signal recognition particle 19 kDa protein:Predicted transcriptional regulators:Predicted transcriptional regulators:Transcriptional regulators:Transcriptional regulators:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Archaeal S-adenosylmethionine synthetase:Archaeal S-adenosylmethionine synthetase:Uncharacterized conserved protein:Uncharacterized conserved protein:Ribosomal protein S19E (S16A):Ribosomal protein S19E (S16A):Uncharacterized conserved protein:Uncharacterized conserved protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleic acid binding:sequence-specific DNA binding transcription factor activity:structural constituent of ribosome:amidophosphoribosyltransferase activity:cytidine deaminase activity:fumarate hydratase activity:methionine adenosyltransferase activity:phosphomannomutase activity:phenylalanine-tRNA ligase activity:serine-tRNA ligase activity:signal transducer activity:ATP binding:carbohydrate metabolic process:fumarate metabolic process:pyrimidine nucleotide biosynthetic process:regulation of transcription, DNA-dependent:translation:phenylalanyl-tRNA aminoacylation:seryl-tRNA aminoacylation:arginine catabolic process:SRP-dependent cotranslational protein targeting to membrane:one-carbon metabolic process:chemotaxis:signal transduction:tRNA processing:zinc ion binding:7S RNA binding:cellular amino acid biosynthetic process:arginine decarboxylase activity:uridylate kinase activity:purine base biosynthetic process:nucleoside metabolic process:thiamine biosynthetic process:oxidoreductase activity:hydrolase activity:intramolecular transferase activity, phosphotransferases:antibiotic biosynthetic process:manganese ion binding:sequence-specific DNA binding:cytidine metabolic process:methionine adenosyltransferase regulator activity:flavin adenine dinucleotide binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Fructose and mannose metabolism:Fructose and mannose metabolism:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Vitamin B6 metabolism:Vitamin B6 metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Ribosome:Ribosome:DNA replication:DNA replication:Protein export:Protein export:Nucleotide excision repair:Nucleotide excision repair:Mismatch repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00106:TIGR00106:sensory_box:sensory_box:serS:serS:pheS:pheS:OPT_sfam:OPT_sfam:purF:purF:cyt_deam_tetra:cyt_deam_tetra:GG-red-SF:GG-red-SF:pyrH_arch:pyrH_arch:PLP_synth_Pdx2:PLP_synth_Pdx2:Arch_GlmM:Arch_GlmM:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Salvage of nucleosides and nucleotides:Regulatory functions:Small molecule interactions:Protein synthesis:tRNA aminoacylation:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridoxine:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Purine ribonucleotide biosynthesis:Metabolism:Metabolism:Salvage of nucleosides and nucleotides:Genetic Information Processing:Global:Amino sugars:Nucleotide and nucleoside interconversions:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Protein synthesis:Regulatory functions:Purines, pyrimidines, nucleosides, and nucleotides:Central intermediary metabolism:Chlorophyll and bacteriochlorphyll:Pyridoxine:General:tRNA aminoacylation:Small molecule interactions:Nucleotide Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Genetic Information Processing:Translation:Metabolism:Poorly characterized:Folding Sorting and Degradation:Metabolism:Replication and Repair:Cellular processes and signaling:Information storage and processing:Metabolism of Cofactors and Vitamins:Global:Metabolism:Translation:Folding Sorting and Degradation:Replication and Repair:Central intermediary metabolism:Amino sugars:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Purine ribonucleotide biosynthesis" 256 "Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:Predicted methyltransferase:Predicted methyltransferase:catalytic activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:General function prediction only:General function prediction only:Metabolism:Poorly characterized:Metabolism:Poorly characterized" 257 "Carbamoylphosphate synthase small subunit:Carbamoylphosphate synthase small subunit:Serine/threonine protein kinase:Serine/threonine protein kinase:Predicted membrane-associated Zn-dependent proteases 1:Predicted membrane-associated Zn-dependent proteases 1:Isopentenyldiphosphate isomerase:Isopentenyldiphosphate isomerase:Transcriptional regulators:Transcriptional regulators:Predicted transcriptional regulators:Predicted transcriptional regulators:Site-specific recombinase XerD:Site-specific recombinase XerD:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:DNA binding:sequence-specific DNA binding transcription factor activity:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity:metalloendopeptidase activity:isopentenyl-diphosphate delta-isomerase activity:protein serine/threonine kinase activity:ATP binding:DNA recombination:regulation of transcription, DNA-dependent:protein phosphorylation:proteolysis:glutamine metabolic process:nitrogen compound metabolic process:zinc ion binding:isoprenoid biosynthetic process:biosynthetic process:DNA integration:hydrolase activity:sequence-specific DNA binding:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:CPSaseIIsmall:CPSaseIIsmall:Amino Acid Metabolism:Nucleotide Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Nucleotide Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Global:Metabolism of Terpenoids and Polyketides:Metabolism" 258 "Energy production and conversion:Energy production and conversion:Riboflavin synthase beta-chain:Riboflavin synthase beta-chain:NTP pyrophosphohydrolases including oxidative damage repair enzymes:NTP pyrophosphohydrolases including oxidative damage repair enzymes:Sugar kinases, ribokinase family:Sugar kinases, ribokinase family:Signal transduction histidine kinase:Signal transduction histidine kinase:Dehydrogenases (flavoproteins):Dehydrogenases (flavoproteins):Permeases of the drug/metabolite transporter (DMT) superfamily:Permeases of the drug/metabolite transporter (DMT) superfamily:NAD-dependent aldehyde dehydrogenases:NAD-dependent aldehyde dehydrogenases:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Phosphatidylserine synthase:Phosphatidylserine synthase:Glycosyltransferases, probably involved in cell wall biogenesis:Glycosyltransferases, probably involved in cell wall biogenesis:Phytoene dehydrogenase and related proteins:Phytoene dehydrogenase and related proteins:Mn-dependent transcriptional regulator:Mn-dependent transcriptional regulator:Archaeal flagellins:Archaeal flagellins:Predicted transcriptional regulators:Predicted transcriptional regulators:Zn-dependent proteases:Zn-dependent proteases:Threonine aldolase:Threonine aldolase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Protein affecting phage T7 exclusion by the F plasmid:Protein affecting phage T7 exclusion by the F plasmid:Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta):Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta):Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:sequence-specific DNA binding transcription factor activity:CDP-diacylglycerol-serine O-phosphatidyltransferase activity:acetyl-CoA carboxylase activity:bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity:metalloendopeptidase activity:monooxygenase activity:dolichyl-phosphate beta-D-mannosyltransferase activity:propionyl-CoA carboxylase activity:riboflavin synthase activity:ribokinase activity:threonine aldolase activity:structural molecule activity:iron ion binding:ATP binding:D-ribose metabolic process:electron transport:regulation of transcription, DNA-dependent:proteolysis:cellular amino acid metabolic process:fatty acid biosynthetic process:cellular aromatic compound metabolic process:cellular component movement:signal transduction:metabolic process:methyltransferase activity:zinc ion binding:phospholipid biosynthetic process:succinate-semialdehyde dehydrogenase [NAD(P)+] activity:riboflavin biosynthetic process:oxidoreductase activity:hydrolase activity:ATPase activity:peptidyl-histidine phosphorylation:pyridoxal phosphate binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Pentose phosphate pathway:Pentose phosphate pathway:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Tyrosine metabolism:Tyrosine metabolism:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Glyoxylate and dicarboxylate metabolism:Glyoxylate and dicarboxylate metabolism:Propanoate metabolism:Propanoate metabolism:Butanoate metabolism:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Riboflavin metabolism:Riboflavin metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:lumazine-synth:lumazine-synth:GG-red-SF:GG-red-SF:arch_flag_Nterm:arch_flag_Nterm:crtI_fam:crtI_fam:Defense mechanisms:Defense mechanisms:Chlorophyll and bacteriochlorphyll:Riboflavin, FMN, and FAD:Other:Global:Metabolism:Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Riboflavin, FMN, and FAD:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers" 259 "Energy production and conversion:Energy production and conversion:Xaa-Pro aminopeptidase:Xaa-Pro aminopeptidase:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Imidazoleglycerol-phosphate synthase:Imidazoleglycerol-phosphate synthase:Orotidine-5'-phosphate decarboxylase:Orotidine-5'-phosphate decarboxylase:Dihydropteroate synthase and related enzymes:Dihydropteroate synthase and related enzymes:Di- and tricarboxylate transporters:Di- and tricarboxylate transporters:Dehydrogenases (flavoproteins):Dehydrogenases (flavoproteins):Predicted membrane-associated Zn-dependent proteases 1:Predicted membrane-associated Zn-dependent proteases 1:Cytochrome c biogenesis protein:Cytochrome c biogenesis protein:ABC-type multidrug transport system, permease component:ABC-type multidrug transport system, permease component:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes:Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes:Predicted GTPase:Predicted GTPase:Mn-dependent transcriptional regulator:Mn-dependent transcriptional regulator:Highly conserved protein containing a thioredoxin domain:Highly conserved protein containing a thioredoxin domain:Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit:Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit:1,4-dihydroxy-2-naphthoate octaprenyltransferase:1,4-dihydroxy-2-naphthoate octaprenyltransferase:Mevalonate kinase:Mevalonate kinase:tRNA nucleotidyltransferase (CCA-adding enzyme):tRNA nucleotidyltransferase (CCA-adding enzyme):N2,N2-dimethylguanosine tRNA methyltransferase:N2,N2-dimethylguanosine tRNA methyltransferase:Eukaryotic-type DNA primase, large subunit:Eukaryotic-type DNA primase, large subunit:Uncharacterized conserved protein:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:histidine biosynthetic process:imidazoleglycerol-phosphate synthase activity:tRNA 3'-terminal CCA addition:sequence-specific DNA binding transcription factor activity:RNA binding:catalytic activity:DNA primase activity:FMN adenylyltransferase activity:dihydropteroate synthase activity:metalloendopeptidase activity:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity:galactokinase activity:mevalonate kinase activity:orotidine-5'-phosphate decarboxylase activity:prenyltransferase activity:tRNA (guanine-N2-)-methyltransferase activity:tRNA adenylyltransferase activity:iron ion binding:ATP binding:GTP binding:galactose metabolic process:'de novo' pyrimidine base biosynthetic process:pyrimidine nucleotide biosynthetic process:DNA replication, synthesis of RNA primer:regulation of transcription, DNA-dependent:proteolysis:transport:potassium ion transport:sodium ion transport:tRNA processing:metabolic process:metalloexopeptidase activity:zinc ion binding:isoprenoid biosynthetic process:cation transmembrane transporter activity:menaquinone biosynthetic process:folic acid-containing compound biosynthetic process:ferrous iron transmembrane transporter activity:citrate transmembrane transporter activity:ferrous iron transport:citrate transport:carotenoid biosynthetic process:tRNA cytidylyltransferase activity:oxidoreductase activity:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen:cytochrome complex assembly:ATPase activity, coupled to transmembrane movement of substances:carbohydrate phosphorylation:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fatty acid biosynthesis:Fatty acid biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Pyrimidine metabolism:Pyrimidine metabolism:Histidine metabolism:Histidine metabolism:Folate biosynthesis:Folate biosynthesis:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Biosynthesis of unsaturated fatty acids:Biosynthesis of unsaturated fatty acids:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:TRM1:TRM1:mevalon_kin:mevalon_kin:hisF:hisF:menA:menA:pyrF_sub2:pyrF_sub2:F420_cofG:F420_cofG:cca_archaeal:cca_archaeal:Defense mechanisms:Defense mechanisms:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Menaquinone and ubiquinone:Amino acid biosynthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Central intermediary metabolism:Other:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA and rRNA base modification:Amino acid biosynthesis:Histidine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Central intermediary metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Histidine family:tRNA and rRNA base modification:Pyrimidine ribonucleotide biosynthesis:Other:Global:Metabolism" 260 "Energy production and conversion:Energy production and conversion:Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain:Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain:3,4-dihydroxy-2-butanone 4-phosphate synthase:3,4-dihydroxy-2-butanone 4-phosphate synthase:AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful):AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful):Phosphoribosylamine-glycine ligase:Phosphoribosylamine-glycine ligase:Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase:Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase:Acetyl-CoA acetyltransferase:Acetyl-CoA acetyltransferase:5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase:5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase:Riboflavin synthase alpha chain:Riboflavin synthase alpha chain:Glutamate dehydrogenase/leucine dehydrogenase:Glutamate dehydrogenase/leucine dehydrogenase:Predicted flavoprotein:Predicted flavoprotein:Acetyltransferases:Acetyltransferases:ABC-type Fe3+-hydroxamate transport system, periplasmic component:ABC-type Fe3+-hydroxamate transport system, periplasmic component:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Uncharacterized ABC-type transport system, permease component:Uncharacterized ABC-type transport system, permease component:Kef-type K+ transport systems, predicted NAD-binding component:Kef-type K+ transport systems, predicted NAD-binding component:Uncharacterized membrane protein, required for N-linked glycosylation:Uncharacterized membrane protein, required for N-linked glycosylation:Na+/H+-dicarboxylate symporters:Na+/H+-dicarboxylate symporters:Transcriptional regulator of a riboflavin/FAD biosynthetic operon:Transcriptional regulator of a riboflavin/FAD biosynthetic operon:Predicted transcriptional regulators:Predicted transcriptional regulators:Leucyl aminopeptidase (aminopeptidase T):Leucyl aminopeptidase (aminopeptidase T):Uncharacterized conserved protein:Uncharacterized conserved protein:Archaeal IMP cyclohydrolase:Archaeal IMP cyclohydrolase:TRAP-type uncharacterized transport system, fused permease components:TRAP-type uncharacterized transport system, fused permease components:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:IMP cyclohydrolase activity:acetyl-CoA C-acyltransferase activity:aminopeptidase activity:glutamate dehydrogenase [NAD(P)+] activity:methenyltetrahydrofolate cyclohydrolase activity:methylenetetrahydrofolate dehydrogenase (NADP+) activity:oligosaccharyl transferase activity:dolichyl-diphosphooligosaccharide-protein glycotransferase activity:phosphoribosylamine-glycine ligase activity:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity:phosphoribosylformylglycinamidine synthase activity:phosphoribosylaminoimidazolecarboxamide formyltransferase activity:phosphoribosylglycinamide formyltransferase activity:pyruvate dehydrogenase (acetyl-transferring) activity:riboflavin synthase activity:transporter activity:iron ion transmembrane transporter activity:ATP binding:purine nucleotide biosynthetic process:IMP biosynthetic process:'de novo' IMP biosynthetic process:protein glycosylation:proteolysis:cellular amino acid metabolic process:transport:potassium ion transport:high-affinity iron ion transport:dicarboxylic acid transport:N-acetyltransferase activity:metabolic process:riboflavin kinase activity:phospholipid biosynthetic process:3,4-dihydroxy-2-butanone-4-phosphate synthase activity:purine base biosynthetic process:riboflavin biosynthetic process:folic acid-containing compound biosynthetic process:phosphotransferase activity, for other substituted phosphate groups:sodium:dicarboxylate symporter activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Fatty acid metabolism:Fatty acid metabolism:Purine metabolism:Purine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Geraniol degradation:Geraniol degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Arginine and proline metabolism:Arginine and proline metabolism:Benzoate degradation:Benzoate degradation:alpha-Linolenic acid metabolism:alpha-Linolenic acid metabolism:Pyruvate metabolism:Pyruvate metabolism:Butanoate metabolism:Butanoate metabolism:One carbon pool by folate:One carbon pool by folate:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Riboflavin metabolism:Riboflavin metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:ribE:ribE:ribB:ribB:purD:purD:FGAM_synth_II:FGAM_synth_II:purO_arch:purO_arch:AcCoA-C-Actrans:AcCoA-C-Actrans:TRAP_fused:TRAP_fused:Transport and binding proteins:Other:Purine ribonucleotide biosynthesis:Unknown substrate:Riboflavin, FMN, and FAD:Fatty acid and phospholipid metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Transport and binding proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism:Metabolism:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Fatty acid and phospholipid metabolism:Other:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Global:Unknown substrate:Biosynthesis of cofactors, prosthetic groups, and carriers:Riboflavin, FMN, and FAD:Information storage and processing:Metabolism:Poorly characterized:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Environmental Information Processing" 261 "Energy production and conversion:Energy production and conversion:Ribosomal protein S10:Ribosomal protein S10:Isoleucyl-tRNA synthetase:Isoleucyl-tRNA synthetase:Phosphoglycerate dehydrogenase and related dehydrogenases:Phosphoglycerate dehydrogenase and related dehydrogenases:Methionyl-tRNA synthetase:Methionyl-tRNA synthetase:3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes:3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes:Cell division GTPase:Cell division GTPase:Glycine cleavage system T protein (aminomethyltransferase):Glycine cleavage system T protein (aminomethyltransferase):Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit:Hemolysins and related proteins containing CBS domains:Hemolysins and related proteins containing CBS domains:Predicted HD superfamily hydrolase:Predicted HD superfamily hydrolase:Na+/H+ antiporter:Na+/H+ antiporter:Uncharacterized protein, possibly involved in aromatic compounds catabolism:Uncharacterized protein, possibly involved in aromatic compounds catabolism:Methylase involved in ubiquinone/menaquinone biosynthesis:Methylase involved in ubiquinone/menaquinone biosynthesis:Predicted membrane protein:Predicted membrane protein:GTPases:GTPases:Uncharacterized conserved protein:Uncharacterized conserved protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:tRNA binding:polysaccharide biosynthetic process:structural constituent of ribosome:catalytic activity:GTPase activity:aminomethyltransferase activity:glycine cleavage system:phosphoglycerate dehydrogenase activity:sulfate adenylyltransferase (ATP) activity:isoleucine-tRNA ligase activity:methionine-tRNA ligase activity:signal transducer activity:ATP binding:GTP binding:translation:isoleucyl-tRNA aminoacylation:methionyl-tRNA aminoacylation:glycine catabolic process:L-serine biosynthetic process:transport:sodium ion transport:regulation of pH:chemotaxis:microtubule-based process:signal transduction:metabolic process:methyltransferase activity:sodium:hydrogen antiporter activity:amino acid binding:thiamine pyrophosphate binding:2-oxoglutarate synthase activity:NAD binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell motility:Cell motility:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Ubiquinone and other terpenoid-quinone biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Selenocompound metabolism:Selenocompound metabolism:One carbon pool by folate:One carbon pool by folate:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Nitrogen metabolism:Nitrogen metabolism:Sulfur metabolism:Sulfur metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:HDIG:HDIG:unchar_dom_1:unchar_dom_1:ileS:ileS:metG:metG:gcvT:gcvT:PGDH:PGDH:PorB_KorB:PorB_KorB:GTP_HflX:GTP_HflX:tRNA aminoacylation:Amino acids and amines:tRNA aminoacylation:General:Serine family:Energy metabolism:Protein synthesis:Unknown function:Amino acid biosynthesis:Metabolism:Metabolism:Translation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Global:Metabolism:Energy metabolism:Amino acids and amines:Protein synthesis:Global:Unknown function:General:Amino acid biosynthesis:Serine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy Metabolism:Carbohydrate Metabolism:Genetic Information Processing" 262 "Energy production and conversion:Energy production and conversion:Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:NAD synthase:NAD synthase:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:ABC-type antimicrobial peptide transport system, permease component:ABC-type antimicrobial peptide transport system, permease component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Signal transduction histidine kinase:Signal transduction histidine kinase:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:BioD-like N-terminal domain of phosphotransacetylase:BioD-like N-terminal domain of phosphotransacetylase:Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain:Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain:NADH dehydrogenase, FAD-containing subunit:NADH dehydrogenase, FAD-containing subunit:S-layer domain:S-layer domain:Subtilisin-like serine proteases:Subtilisin-like serine proteases:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Acetyltransferases, including N-acetylases of ribosomal proteins:Acetyltransferases, including N-acetylases of ribosomal proteins:Predicted transcriptional regulators:Predicted transcriptional regulators:Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain):Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain):Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Cytochrome P450:Cytochrome P450:Nitrate/nitrite transporter:Nitrate/nitrite transporter:Predicted iron-dependent peroxidase:Predicted iron-dependent peroxidase:Arylsulfatase A and related enzymes:Arylsulfatase A and related enzymes:Uncharacterized conserved protein:Uncharacterized conserved protein:ABC-type oligopeptide transport system, ATPase component:ABC-type oligopeptide transport system, ATPase component:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:6-phosphofructokinase activity:NAD+ kinase activity:NAD+ synthase (glutamine-hydrolyzing) activity:NADH dehydrogenase activity:acetate-CoA ligase activity:acyl-CoA dehydrogenase activity:prolyl oligopeptidase activity:subtilase activity:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity:glycine cleavage system:glycine dehydrogenase (decarboxylating) activity:monooxygenase activity:signal transducer activity:transporter activity:iron ion binding:ATP binding:glycolysis:electron transport:proteolysis:glycine metabolic process:transport:chemotaxis:signal transduction:metabolic process:transaminase activity:sulfuric ester hydrolase activity:NAD+ synthase activity:phosphate acetyltransferase activity:cobalamin biosynthetic process:NAD biosynthetic process:peptide transporter activity:peptide transport:ATPase activity:peptidyl-histidine phosphorylation:heme binding:pyridoxal phosphate binding:cobyrinic acid a,c-diamide synthase activity:glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity:flavin adenine dinucleotide binding:NADP binding:NAD binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Oxidative phosphorylation:Oxidative phosphorylation:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Geraniol degradation:Geraniol degradation:Pyruvate metabolism:Pyruvate metabolism:Naphthalene degradation:Naphthalene degradation:Propanoate metabolism:Propanoate metabolism:Methane metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Nitrogen metabolism:Nitrogen metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadE:nadE:GAPDH-II_archae:GAPDH-II_archae:Defense mechanisms:Defense mechanisms:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Global:Environmental Information Processing:Metabolism:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Metabolism:Global:Membrane Transport:Environmental Information Processing:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Pyridine nucleotides" 263 "Energy production and conversion:Energy production and conversion:Aspartyl/asparaginyl-tRNA synthetases:Aspartyl/asparaginyl-tRNA synthetases:Translation initiation factor 1 (eIF-1/SUI1) and related proteins:Translation initiation factor 1 (eIF-1/SUI1) and related proteins:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Xanthosine triphosphate pyrophosphatase:Xanthosine triphosphate pyrophosphatase:Phosphoribosyl-ATP pyrophosphohydrolase:Phosphoribosyl-ATP pyrophosphohydrolase:GMP synthase, PP-ATPase domain/subunit:GMP synthase, PP-ATPase domain/subunit:Carbamate kinase:Carbamate kinase:Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit:Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Putative intracellular protease/amidase:Putative intracellular protease/amidase:ABC-type antimicrobial peptide transport system, ATPase component:ABC-type antimicrobial peptide transport system, ATPase component:Uncharacterized conserved protein:Uncharacterized conserved protein:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes:DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes:Uncharacterized conserved protein, contains double-stranded beta-helix domain:Uncharacterized conserved protein, contains double-stranded beta-helix domain:Pterin-4a-carbinolamine dehydratase:Pterin-4a-carbinolamine dehydratase:Predicted ornithine cyclodeaminase, mu-crystallin homolog:Predicted ornithine cyclodeaminase, mu-crystallin homolog:Uncharacterized small protein:Uncharacterized small protein:Predicted transcriptional regulator:Predicted transcriptional regulator:Plastocyanin:Plastocyanin:Predicted transcriptional regulator:Predicted transcriptional regulator:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:histidine biosynthetic process:nucleic acid binding:sequence-specific DNA binding transcription factor activity:translation initiation factor activity:GMP synthase (glutamine-hydrolyzing) activity:NAD+ synthase (glutamine-hydrolyzing) activity:fructose-bisphosphate aldolase activity:phosphoribosyl-ATP diphosphatase activity:tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity:aspartate-tRNA ligase activity:copper ion binding:ATP binding:electron transport:GMP biosynthetic process:regulation of transcription, DNA-dependent:translational initiation:aspartyl-tRNA aminoacylation:arginine metabolic process:tRNA processing:4-alpha-hydroxytetrahydrobiopterin dehydratase activity:NADH dehydrogenase (ubiquinone) activity:metabolic process:ornithine cyclodeaminase activity:cellular amino acid biosynthetic process:carbamate kinase activity:electron carrier activity:NAD biosynthetic process:specific transcriptional repressor activity:ATPase activity:nucleoside-triphosphatase activity:ATP synthesis coupled electron transport:negative regulation of transcription, DNA-dependent:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Pentose phosphate pathway:Fructose and mannose metabolism:Fructose and mannose metabolism:Purine metabolism:Purine metabolism:Arginine and proline metabolism:Arginine and proline metabolism:Histidine metabolism:Histidine metabolism:Thiamine metabolism:Thiamine metabolism:Nitrogen metabolism:Nitrogen metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:DNA replication:DNA replication:Nucleotide excision repair:Nucleotide excision repair:Mismatch repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00042:TIGR00042:aspS_arch:aspS_arch:arcC:arcC:guaA_Cterm:guaA_Cterm:SUI1_rel:SUI1_rel:tspaseT_teng_C:tspaseT_teng_C:halo_cynanin:halo_cynanin:histidine_hisI:histidine_hisI:Defense mechanisms:Defense mechanisms:Amino acids and amines:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation:Translation factors:Mobile and extrachromosomal element functions:Transposon functions:Amino acid biosynthesis:Histidine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Mobile and extrachromosomal element functions:Protein synthesis:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Histidine family:Transposon functions:Translation factors:tRNA aminoacylation:DNA replication, recombination, and repair:Purine ribonucleotide biosynthesis:Amino acids and amines:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Translation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Replication and Repair:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Global:Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy metabolism" 264 "Energy production and conversion:Energy production and conversion:Acetyltransferase (isoleucine patch superfamily):Acetyltransferase (isoleucine patch superfamily):Molybdopterin biosynthesis enzyme:Molybdopterin biosynthesis enzyme:Predicted epimerase, PhzC/PhzF homolog:Predicted epimerase, PhzC/PhzF homolog:Predicted Fe-S oxidoreductases:Predicted Fe-S oxidoreductases:Phosphatidylglycerophosphate synthase:Phosphatidylglycerophosphate synthase:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Predicted sugar phosphatases of the HAD superfamily:Predicted sugar phosphatases of the HAD superfamily:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Cation transport ATPase:Cation transport ATPase:Signal transduction histidine kinase regulating citrate/malate metabolism:Signal transduction histidine kinase regulating citrate/malate metabolism:Predicted DNA binding protein:Predicted DNA binding protein:3-hydroxy-3-methylglutaryl CoA synthase:3-hydroxy-3-methylglutaryl CoA synthase:Ketosteroid isomerase-related protein:Ketosteroid isomerase-related protein:Signal transduction histidine kinase:Signal transduction histidine kinase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:two-component signal transduction system (phosphorelay):sequence-specific DNA binding transcription factor activity:catalytic activity:copper-exporting ATPase activity:hydroxymethylglutaryl-CoA synthase activity:protein histidine kinase activity:signal transducer activity:protein binding:ATP binding:transcription initiation, DNA-dependent:regulation of transcription, DNA-dependent:Mo-molybdopterin cofactor biosynthetic process:response to stress:signal transduction:metabolic process:zinc ion binding:isoprenoid biosynthetic process:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity:cellular amino acid biosynthetic process:phospholipid biosynthetic process:biosynthetic process:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism:proton transport:transferase activity, transferring acyl groups:phosphotransferase activity, for other substituted phosphate groups:hydrolase activity:hydro-lyase activity:peptidyl-histidine phosphorylation:metal ion transport:metal ion binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Butanoate metabolism:Butanoate metabolism:Terpenoid backbone biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Basal transcription factors:Basal transcription factors:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:molyb_syn:molyb_syn:sensory_box:sensory_box:PhzF_family:PhzF_family:HAD-SF-IIA:HAD-SF-IIA:ATPase-IB_hvy:ATPase-IB_hvy:F420_NP1902A:F420_NP1902A:Htur_1727_fam:Htur_1727_fam:rSAM_more_4Fe4S:rSAM_more_4Fe4S:Small molecule interactions:Enzymes of unknown specificity:Regulatory functions:Cellular processes:Unknown function:Global:Genetic Information Processing:Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Transcription:Global:Metabolism:Regulatory functions:Small molecule interactions:Cellular processes:Toxin production and resistance:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Transcription:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Carbohydrate Metabolism:Toxin production and resistance" 265 "Chromatin structure and dynamics:Chromatin structure and dynamics:Energy production and conversion:Energy production and conversion:Xaa-Pro aminopeptidase:Xaa-Pro aminopeptidase:Hydrogenase maturation factor:Hydrogenase maturation factor:Phosphoribosylpyrophosphate synthetase:Phosphoribosylpyrophosphate synthetase:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components:Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):Histone acetyltransferase:Histone acetyltransferase:Highly conserved protein containing a thioredoxin domain:Highly conserved protein containing a thioredoxin domain:Cdc6-related protein, AAA superfamily ATPase:Cdc6-related protein, AAA superfamily ATPase:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Predicted nucleic-acid-binding protein containing a Zn-ribbon:Predicted nuclease of the RecB family:Predicted nuclease of the RecB family:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Sugar phosphate permease:Sugar phosphate permease:Leucyl aminopeptidase (aminopeptidase T):Leucyl aminopeptidase (aminopeptidase T):Predicted hydrolase of the alpha/beta superfamily:Predicted hydrolase of the alpha/beta superfamily:Predicted membrane protein:Predicted membrane protein:Signal transduction histidine kinase:Signal transduction histidine kinase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:nucleotide binding:magnesium ion binding:catalytic activity:UDP-N-acetylglucosamine diphosphorylase activity:aminopeptidase activity:X-Pro dipeptidase activity:histone acetyltransferase activity:mannose-6-phosphate isomerase activity:ribose phosphate diphosphokinase activity:transporter activity:ATP binding:mannose metabolic process:proteolysis:creatine metabolic process:transport:potassium ion transport:signal transduction:N-acetyltransferase activity:metabolic process:cation transmembrane transporter activity:biosynthetic process:nucleoside metabolic process:nucleotide biosynthetic process:iron-chelate-transporting ATPase activity:transferase activity, transferring acyl groups:nucleotidyltransferase activity:hydrolase activity:creatinase activity:nucleoside-triphosphatase activity:glucosamine-1-phosphate N-acetyltransferase activity:cellular metabolic process:coenzyme binding:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Pentose phosphate pathway:Purine metabolism:Purine metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00697:TIGR00697:ELP3:ELP3:ribP_PPkin:ribP_PPkin:TIGR02928:TIGR02928:oxido_grp_1:oxido_grp_1:Arch_glmU:Arch_glmU:Conserved:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Hypothetical proteins:Transcription:DNA-dependent RNA polymerase:DNA metabolism:Transcription:DNA replication, recombination, and repair:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Enzymes of unknown specificity:Conserved:DNA-dependent RNA polymerase:DNA replication, recombination, and repair:Purine ribonucleotide biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Metabolism:Purine ribonucleotide biosynthesis:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Nucleotide Metabolism:Carbohydrate Metabolism:Unknown function:Global:Membrane Transport:Environmental Information Processing:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Hypothetical proteins" 266 "Energy production and conversion:Energy production and conversion:Succinyl-CoA synthetase, beta subunit:Succinyl-CoA synthetase, beta subunit:Molecular chaperone (small heat shock protein):Molecular chaperone (small heat shock protein):Tyrosyl-tRNA synthetase:Tyrosyl-tRNA synthetase:Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit:Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit:Ribosomal protein L16/L10E:Ribosomal protein L16/L10E:Ribonucleotide reductase, beta subunit:Ribonucleotide reductase, beta subunit:Citrate synthase:Citrate synthase:Na+-driven multidrug efflux pump:Na+-driven multidrug efflux pump:Universal stress protein UspA and related nucleotide-binding proteins:Universal stress protein UspA and related nucleotide-binding proteins:Rhodanese-related sulfurtransferase:Rhodanese-related sulfurtransferase:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Sec-independent protein secretion pathway component TatC:Sec-independent protein secretion pathway component TatC:Multisubunit Na+/H+ antiporter, MnhC subunit:Multisubunit Na+/H+ antiporter, MnhC subunit:GTPase SAR1 and related small G proteins:GTPase SAR1 and related small G proteins:Rad3-related DNA helicases:Rad3-related DNA helicases:S-layer domain:S-layer domain:Ribosomal protein L15E:Ribosomal protein L15E:Protein-disulfide isomerase:Protein-disulfide isomerase:Acetyltransferases, including N-acetylases of ribosomal proteins:Acetyltransferases, including N-acetylases of ribosomal proteins:Multisubunit Na+/H+ antiporter, MnhF subunit:Multisubunit Na+/H+ antiporter, MnhF subunit:Uncharacterized conserved protein:Uncharacterized conserved protein:tRNA(1-methyladenosine) methyltransferase and related methyltransferases:tRNA(1-methyladenosine) methyltransferase and related methyltransferases:Copper chaperone:Copper chaperone:Rhodanese-related sulfurtransferase:Rhodanese-related sulfurtransferase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:ABC-type antimicrobial peptide transport system, permease component:ABC-type antimicrobial peptide transport system, permease component:Nucleotide transport and metabolism:Nucleotide transport and metabolism:nucleic acid binding:DNA binding:structural constituent of ribosome:catalytic activity:DNA topoisomerase (ATP-hydrolyzing) activity:GTPase activity:ATP-dependent DNA helicase activity:citrate (Si)-synthase activity:ribonucleoside-diphosphate reductase activity:succinate-CoA ligase (ADP-forming) activity:thiosulfate sulfurtransferase activity:tyrosine-tRNA ligase activity:transporter activity:ATP binding:GTP binding:mitochondrial electron transport, NADH to ubiquinone:nucleobase-containing compound metabolic process:DNA topological change:DNA unwinding involved in replication:translation:tyrosyl-tRNA aminoacylation:transport:ion transport:drug transmembrane transport:response to stress:small GTPase mediated signal transduction:ATP-dependent helicase activity:N-acetyltransferase activity:NADH dehydrogenase (ubiquinone) activity:metabolic process:deoxyribonucleoside diphosphate metabolic process:ion transmembrane transporter activity:drug transmembrane transporter activity:antiporter activity:tRNA (adenine-N1-)-methyltransferase activity:metal ion transport:metal ion binding:transition metal ion binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Glyoxylate and dicarboxylate metabolism:Glyoxylate and dicarboxylate metabolism:Propanoate metabolism:Propanoate metabolism:C5-Branched dibasic acid metabolism:C5-Branched dibasic acid metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:ABC transporters:ABC transporters:Ribosome:Ribosome:Protein export:Protein export:Bacterial secretion system:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:small_GTP:small_GTP:tyrS:tyrS:matE:matE:sucCoAbeta:sucCoAbeta:gyrA:gyrA:cit_synth_II:cit_synth_II:TatC-Arch:TatC-Arch:arch_flag_Nterm:arch_flag_Nterm:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Transport and binding proteins:Other:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:DNA metabolism:Energy metabolism:General:Translation:Other:tRNA aminoacylation:DNA replication, recombination, and repair:TCA cycle:Global:Genetic Information Processing:Protein synthesis:Environmental Information Processing:Genetic Information Processing:Metabolism:Global:Membrane Transport:Folding Sorting and Degradation:Translation:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Information storage and processing:Transport and binding proteins:Nucleotide Metabolism:Unknown function:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Metabolism:Metabolism:Membrane Transport:Environmental Information Processing:Folding Sorting and Degradation:Energy metabolism:TCA cycle:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation" 267 "Energy production and conversion:Energy production and conversion:Predicted ATPase of the PP-loop superfamily implicated in cell cycle control:Predicted ATPase of the PP-loop superfamily implicated in cell cycle control:Mismatch repair ATPase (MutS family):Mismatch repair ATPase (MutS family):Methylated DNA-protein cysteine methyltransferase:Methylated DNA-protein cysteine methyltransferase:Glycerol dehydrogenase and related enzymes:Glycerol dehydrogenase and related enzymes:Predicted epimerase, PhzC/PhzF homolog:Predicted epimerase, PhzC/PhzF homolog:Deoxyribodipyrimidine photolyase:Deoxyribodipyrimidine photolyase:Glycosyltransferase:Glycosyltransferase:Predicted phosphatases:Predicted phosphatases:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Restriction endonuclease S subunits:Restriction endonuclease S subunits:Ferredoxin:Ferredoxin:Superfamily II helicase:Superfamily II helicase:Sulfur transfer protein involved in thiamine biosynthesis:Sulfur transfer protein involved in thiamine biosynthesis:Molybdenum cofactor biosynthesis enzyme:Molybdenum cofactor biosynthesis enzyme:Predicted transcriptional regulator:Predicted transcriptional regulator:Predicted DNA binding protein:Predicted DNA binding protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:magnesium ion binding:nucleic acid binding:DNA binding:damaged DNA binding:catalytic activity:3-dehydroquinate synthase activity:deoxyribodipyrimidine photo-lyase activity:methylated-DNA-[protein]-cysteine S-methyltransferase activity:cysteine-type endopeptidase activity:inorganic diphosphatase activity:signal transducer activity:ATP binding:electron transport:DNA repair:mismatch repair:DNA modification:proteolysis:glycerol ether metabolic process:Mo-molybdopterin cofactor biosynthetic process:phosphate-containing compound metabolic process:signal transduction:ATP-dependent helicase activity:metabolic process:methyltransferase activity:phosphoglycolate phosphatase activity:Type I site-specific deoxyribonuclease activity:electron carrier activity:biosynthetic process:aromatic amino acid family biosynthetic process:protein disulfide oxidoreductase activity:specific transcriptional repressor activity:transferase activity:mismatched DNA binding:cell redox homeostasis:negative regulation of transcription, DNA-dependent:metal ion binding:glycerol-1-phosphate dehydrogenase [NAD(P)+] activity:iron-sulfur cluster binding:4 iron, 4 sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Mismatch repair:Mismatch repair:Sulfur relay system:Sulfur relay system:General function prediction only:General function prediction only:sensory_box:sensory_box:TIGR00269:TIGR00269:PhzF_family:PhzF_family:mutS1:mutS1:tspaseT_teng_C:tspaseT_teng_C:moaA_archaeal:moaA_archaeal:Defense mechanisms:Defense mechanisms:DNA metabolism:Regulatory functions:Molybdopterin:Conserved:Transposon functions:Toxin production and resistance:DNA replication, recombination, and repair:Small molecule interactions:Genetic Information Processing:Replication and Repair:Folding Sorting and Degradation:Biosynthesis of cofactors, prosthetic groups, and carriers:Hypothetical proteins:Mobile and extrachromosomal element functions:Cellular processes:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Regulatory functions:Small molecule interactions:DNA metabolism:DNA replication, recombination, and repair:Cellular processes:Toxin production and resistance:Mobile and extrachromosomal element functions:Transposon functions:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 268 "Energy production and conversion:Energy production and conversion:Oxyanion-translocating ATPase:Oxyanion-translocating ATPase:2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway):2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway):Ribonucleotide reductase, alpha subunit:Ribonucleotide reductase, alpha subunit:DNA mismatch repair enzyme (predicted ATPase):DNA mismatch repair enzyme (predicted ATPase):Predicted divalent heavy-metal cations transporter:Predicted divalent heavy-metal cations transporter:Ferredoxin:Ferredoxin:Predicted transcriptional regulators:Predicted transcriptional regulators:Predicted nucleoside-diphosphate-sugar epimerases:Predicted nucleoside-diphosphate-sugar epimerases:Na+-dependent transporters of the SNF family:Na+-dependent transporters of the SNF family:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Uncharacterized conserved protein:Uncharacterized conserved protein:Deoxyinosine 3'endonuclease (endonuclease V):Deoxyinosine 3'endonuclease (endonuclease V):Uncharacterized conserved protein:Uncharacterized conserved protein:Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain):Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain):tRNA nucleotidyltransferase (CCA-adding enzyme):tRNA nucleotidyltransferase (CCA-adding enzyme):Predicted archaeal kinase (sugar kinase superfamily):Predicted archaeal kinase (sugar kinase superfamily):Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Predicted nucleic acid-binding protein, contains PIN domain:Predicted nucleic acid-binding protein, contains PIN domain:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted endonuclease containing a URI domain:Predicted endonuclease containing a URI domain:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted DNA binding protein:Predicted DNA binding protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:nucleotide binding:tRNA 3'-terminal CCA addition:DNA binding:sequence-specific DNA binding transcription factor activity:RNA binding:catalytic activity:FMN adenylyltransferase activity:NAD+ kinase activity:acyl-CoA dehydrogenase activity:dihydrolipoyl dehydrogenase activity:subtilase activity:nuclease activity:endonuclease activity:ribonucleoside-diphosphate reductase activity:tRNA adenylyltransferase activity:neurotransmitter:sodium symporter activity:protein binding:ATP binding:electron transport:DNA replication:DNA repair:mismatch repair:regulation of transcription, DNA-dependent:protein folding:proteolysis:anion transport:neurotransmitter transport:metabolic process:electron carrier activity:purine ribonucleoside monophosphate biosynthetic process:DNA restriction-modification system:disulfide oxidoreductase activity:arsenite-transmembrane transporting ATPase activity:kinase activity:phosphorylation:tRNA cytidylyltransferase activity:oxidoreductase activity:hydrolase activity:deaminase activity:mismatched DNA binding:heat shock protein binding:cobalamin binding:antimonite-transporting ATPase activity:deoxyribonuclease V activity:cell redox homeostasis:flavin adenine dinucleotide binding:coenzyme binding:unfolded protein binding:iron-sulfur cluster binding:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Geraniol degradation:Geraniol degradation:Naphthalene degradation:Naphthalene degradation:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:arsA:arsA:mutl:mutl:NrdJ_Z:NrdJ_Z:cca_archaeal:cca_archaeal:2'-Deoxyribonucleotide metabolism:Global:Metabolism:Metabolism:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:2'-Deoxyribonucleotide metabolism:DNA metabolism:DNA replication, recombination, and repair:Hypothetical proteins:Conserved:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Nucleotide Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Hypothetical proteins:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Conserved:DNA replication, recombination, and repair" 269 "Adenylosuccinate lyase:Adenylosuccinate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Anthranilate/para-aminobenzoate synthases component I:Anthranilate/para-aminobenzoate synthases component I:Zn-dependent protease with chaperone function:Zn-dependent protease with chaperone function:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Uncharacterized conserved protein:Uncharacterized conserved protein:Flp pilus assembly protein TadC:Flp pilus assembly protein TadC:Predicted membrane protein:Predicted membrane protein:Arylsulfatase A and related enzymes:Arylsulfatase A and related enzymes:Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon:Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon:Predicted DNA binding protein:Predicted DNA binding protein:Predicted membrane protein:Predicted membrane protein:Ketosteroid isomerase-related protein:Ketosteroid isomerase-related protein:Kynureninase:Kynureninase:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:catalytic activity:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity:anthranilate synthase activity:branched-chain-amino-acid transaminase activity:metalloendopeptidase activity:signal transducer activity:proteolysis:tryptophan catabolic process:chemotaxis:signal transduction:metabolic process:zinc ion binding:transaminase activity:sulfuric ester hydrolase activity:biosynthetic process:protein secretion:NAD biosynthetic process:oxidoreductase activity:antibiotic biosynthetic process:pyridoxal phosphate binding:kynureninase activity:4-amino-4-deoxychorismate synthase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Pentose phosphate pathway:Purine metabolism:Purine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Tryptophan metabolism:Tryptophan metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Bacterial chemotaxis:Bacterial chemotaxis:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:PabB-clade2:PabB-clade2:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Poorly characterized:Environmental Information Processing:Metabolism:Metabolism:Cellular Processes:Cell Motility:Signal Transduction:Metabolism of Cofactors and Vitamins:Signal Transduction:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cellular Processes:Global:Environmental Information Processing:Global:Cell Motility:Information storage and processing:Cellular processes and signaling:Metabolism" 270 "Energy production and conversion:Energy production and conversion:Cysteine synthase:Cysteine synthase:Glutamate decarboxylase and related PLP-dependent proteins:Glutamate decarboxylase and related PLP-dependent proteins:Homoserine kinase:Homoserine kinase:Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase):Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase):Mismatch repair ATPase (MutS family):Mismatch repair ATPase (MutS family):Glycosyltransferase:Glycosyltransferase:Nucleoside-diphosphate-sugar epimerases:Nucleoside-diphosphate-sugar epimerases:Ca2+/Na+ antiporter:Ca2+/Na+ antiporter:Cytochrome c biogenesis protein:Cytochrome c biogenesis protein:Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:Predicted exporters of the RND superfamily:Predicted exporters of the RND superfamily:ABC-type multidrug transport system, ATPase and permease components:ABC-type multidrug transport system, ATPase and permease components:Uncharacterized conserved protein:Uncharacterized conserved protein:Multisubunit Na+/H+ antiporter, MnhG subunit:Multisubunit Na+/H+ antiporter, MnhG subunit:Uncharacterized protein, putative amidase:Uncharacterized protein, putative amidase:Transcriptional regulators:Transcriptional regulators:Glycosyl transferases, related to UDP-glucuronosyltransferase:Glycosyl transferases, related to UDP-glucuronosyltransferase:Predicted metal-dependent hydrolase of the TIM-barrel fold:Predicted metal-dependent hydrolase of the TIM-barrel fold:Nitrate/nitrite transporter:Nitrate/nitrite transporter:Transposase and inactivated derivatives, IS5 family:Transposase and inactivated derivatives, IS5 family:Predicted acyltransferase:Predicted acyltransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:DNA binding:damaged DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:cysteine synthase activity:homoserine kinase activity:transposase activity:signal transducer activity:transporter activity:monovalent cation:hydrogen antiporter activity:ATP binding:mismatch repair:transposition, DNA-mediated:regulation of transcription, DNA-dependent:cysteine biosynthetic process from serine:threonine metabolic process:transport:chemotaxis:signal transduction:metabolic process:methyltransferase activity:biosynthetic process:proton transport:phosphorylation:transferase activity:transferase activity, transferring acyl groups:carboxy-lyase activity:cytochrome complex assembly:carboxylic acid metabolic process:pyridoxal phosphate binding:mismatched DNA binding:ATPase activity, coupled to transmembrane movement of substances:sequence-specific DNA binding:cellular metabolic process:creatininase activity:coenzyme binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Tyrosine metabolism:Tyrosine metabolism:Selenocompound metabolism:Selenocompound metabolism:Sulfur metabolism:Sulfur metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Mismatch repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:thrB:thrB:TIGR00367:TIGR00367:2A067:2A067:mutS1:mutS1:CPA3_mnhG_phaG:CPA3_mnhG_phaG:tyr_de_CO2_Arch:tyr_de_CO2_Arch:Defense mechanisms:Defense mechanisms:General:Unknown function:Transport and binding proteins:DNA metabolism:Other:Aspartate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Replication and Repair:Global:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Transport and binding proteins:Unknown substrate:Cations and iron carrying compounds:Unknown function:General:Amino acid biosynthesis:Aspartate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Cations and iron carrying compounds:Unknown substrate:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Amino acid biosynthesis" 271 "Energy production and conversion:Energy production and conversion:Na+/H+ antiporter:Na+/H+ antiporter:Predicted DNA binding protein:Predicted DNA binding protein:Signal transduction histidine kinase:Signal transduction histidine kinase:two-component sensor activity:DNA binding:ATP binding:DNA recombination:sodium ion transport:regulation of pH:signal transduction:DNA integration:sodium:hydrogen antiporter activity:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:Poorly characterized:Cellular processes and signaling:Metabolism:Cellular processes and signaling:Metabolism:Poorly characterized" 272 "Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Restriction endonuclease:Restriction endonuclease:nucleic acid binding:DNA binding:endonuclease activity:zinc ion binding:DNA restriction-modification system:Replication, recombination and repair:Replication, recombination and repair:Defense mechanisms:Defense mechanisms:Information storage and processing:Cellular processes and signaling:Information storage and processing:Cellular processes and signaling" 273 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Aspartate oxidase:Chloride channel protein EriC:Chloride channel protein EriC:Nicotinate-nucleotide pyrophosphorylase:Nicotinate-nucleotide pyrophosphorylase:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Quinolinate synthase:Quinolinate synthase:Deoxyribodipyrimidine photolyase:Deoxyribodipyrimidine photolyase:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:ATPases of the AAA+ class:ATPases of the AAA+ class:Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Predicted oxidoreductases (related to aryl-alcohol dehydrogenases):Isochorismate synthase:Isochorismate synthase:Phytoene dehydrogenase and related proteins:Phytoene dehydrogenase and related proteins:Phytoene/squalene synthetase:Phytoene/squalene synthetase:Predicted transcriptional regulators:Predicted transcriptional regulators:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Predicted membrane protein:Predicted membrane protein:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):cell killing:catalytic activity:beta-carotene 15,15'-monooxygenase activity:deoxyribodipyrimidine photo-lyase activity:subtilase activity:monooxygenase activity:nicotinate-nucleotide diphosphorylase (carboxylating) activity:ion channel activity:voltage-gated chloride channel activity:ATP binding:electron transport:DNA repair:regulation of transcription, DNA-dependent:proteolysis:cellular aromatic compound metabolic process:ion transport:chloride transport:N-acetyltransferase activity:metabolic process:L-aspartate oxidase activity:isochorismate synthase activity:nitrate reductase activity:quinolinate synthetase A activity:electron carrier activity:biosynthetic process:thiamine biosynthetic process:NAD biosynthetic process:cellular response to phosphate starvation:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:ATPase activity:nucleoside-triphosphatase activity:molybdenum ion binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Biosynthesis of siderophore group nonribosomal peptides:Biosynthesis of siderophore group nonribosomal peptides:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:nadC:nadC:sensory_box:sensory_box:isochor_syn:isochor_syn:nadA:nadA:crtI_fam:crtI_fam:CarR_dom_SF:CarR_dom_SF:blh_monoox:blh_monoox:Poorly characterized:Metabolism:Global:Cellular processes and signaling:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Regulatory functions:Pyridine nucleotides:Menaquinone and ubiquinone:Other:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Regulatory functions:Pyridine nucleotides:Menaquinone and ubiquinone:Other:Biosynthesis of cofactors, prosthetic groups, and carriers:Small molecule interactions:Metabolism" 274 "Energy production and conversion:Energy production and conversion:Adenylosuccinate lyase:Adenylosuccinate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Anthranilate/para-aminobenzoate synthases component I:Anthranilate/para-aminobenzoate synthases component I:Aspartate/tyrosine/aromatic aminotransferase:Aspartate/tyrosine/aromatic aminotransferase:Glycosyltransferases involved in cell wall biogenesis:Glycosyltransferases involved in cell wall biogenesis:Exopolyphosphatase-related proteins:Exopolyphosphatase-related proteins:Predicted sugar phosphatases of the HAD superfamily:Predicted sugar phosphatases of the HAD superfamily:Flavodoxin reductases (ferredoxin-NADPH reductases) family 1:Flavodoxin reductases (ferredoxin-NADPH reductases) family 1:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Serine acetyltransferase:Serine acetyltransferase:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Threonine dehydrogenase and related Zn-dependent dehydrogenases:Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit:Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit:Uncharacterized conserved protein:Uncharacterized conserved protein:Archaeal flagella assembly protein J:Archaeal flagella assembly protein J:Signal transduction histidine kinase regulating citrate/malate metabolism:Signal transduction histidine kinase regulating citrate/malate metabolism:Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon:Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:RNA binding:catalytic activity:4-nitrophenylphosphatase activity:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity:anthranilate synthase activity:branched-chain-amino-acid transaminase activity:phosphogluconate dehydrogenase (decarboxylating) activity:ATP binding:pentose-phosphate shunt:electron transport:regulation of transcription, DNA-dependent:cysteine biosynthetic process from serine:potassium ion transport:signal transduction:metabolic process:zinc ion binding:serine O-acetyltransferase activity:biosynthetic process:protein secretion:oxidoreductase activity:transferase activity, transferring nitrogenous groups:hydrolase activity:peptidyl-histidine phosphorylation:manganese ion binding:pyridoxal phosphate binding:cellular metabolic process:4-amino-4-deoxychorismate synthase activity:coenzyme binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Pentose phosphate pathway:Pentose phosphate pathway:Purine metabolism:Purine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Valine leucine and isoleucine biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Pantothenate and CoA biosynthesis:Pantothenate and CoA biosynthesis:Sulfur metabolism:Sulfur metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:cysE:cysE:HAD-SF-IIA:HAD-SF-IIA:PabB-clade2:PabB-clade2:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Poorly characterized:Regulatory functions:Serine family:Enzymes of unknown specificity:Small molecule interactions:Global:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Regulatory functions:Small molecule interactions:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Serine family:Information storage and processing:Cellular processes and signaling:Metabolism:Amino acid biosynthesis:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Unknown function" 275 "20S proteasome, alpha and beta subunits:20S proteasome, alpha and beta subunits:Uncharacterized conserved protein:Uncharacterized conserved protein:endopeptidase activity:threonine-type endopeptidase activity:proteasome endopeptidase activity:ubiquitin-dependent protein catabolic process:potassium ion transport:cation transmembrane transporter activity:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Proteasome:Proteasome:Function unknown:Function unknown:arc_protsome_A:arc_protsome_A:Folding Sorting and Degradation:Protein fate:Degradation of proteins, peptides, and glycopeptides:Cellular processes and signaling:Poorly characterized:Genetic Information Processing:Folding Sorting and Degradation:Degradation of proteins, peptides, and glycopeptides:Protein fate:Cellular processes and signaling:Poorly characterized:Genetic Information Processing" 276 "" 277 "Cobalamin-5-phosphate synthase:Cobalamin-5-phosphate synthase:Predicted metal-dependent hydrolase:Predicted metal-dependent hydrolase:cobalamin 5'-phosphate synthase activity:cobalamin biosynthetic process:adenosylcobinamide-GDP ribazoletransferase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Metabolic pathways:General function prediction only:General function prediction only:Metabolism of Cofactors and Vitamins:Global:Metabolism:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Global:Metabolism:Poorly characterized:Metabolism" 278 "Energy production and conversion:Energy production and conversion:Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit:Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit:Putative archaeal flagellar protein C:Putative archaeal flagellar protein C:succinate dehydrogenase activity:ciliary or flagellar motility:tricarboxylic acid cycle:electron transport:electron carrier activity:iron-sulfur cluster binding:Cell motility:Cell motility:Citrate cycle (TCA cycle):Citrate cycle (TCA cycle):Oxidative phosphorylation:Oxidative phosphorylation:Butanoate metabolism:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Carbon fixation pathways in prokaryotes:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:dhsB:dhsB:Carbohydrate Metabolism:Energy Metabolism:Global:Metabolism:Energy metabolism:TCA cycle:Cellular processes and signaling:Metabolism:Global:TCA cycle:Energy metabolism:Metabolism:Metabolism:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism" 279 "NMD protein affecting ribosome stability and mRNA decay:NMD protein affecting ribosome stability and mRNA decay:Restriction endonuclease:Restriction endonuclease:K+-transporting ATPase, A chain:K+-transporting ATPase, A chain:K+-transporting ATPase, c chain:K+-transporting ATPase, c chain:Predicted methyltransferase:Predicted methyltransferase:DNA binding:serine-type carboxypeptidase activity:endonuclease activity:proteolysis:potassium ion transport:zinc ion binding:potassium-transporting ATPase activity:DNA restriction-modification system:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:Two-component system:General function prediction only:General function prediction only:kdpA:kdpA:Defense mechanisms:Defense mechanisms:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Transport and binding proteins:Cations and iron carrying compounds:Environmental Information Processing:Signal Transduction:Poorly characterized:Environmental Information Processing:Signal Transduction:Metabolism" 280 "Pseudouridylate synthase:Pseudouridylate synthase:Nucleoside-diphosphate-sugar epimerases:Nucleoside-diphosphate-sugar epimerases:dTDP-glucose pyrophosphorylase:dTDP-glucose pyrophosphorylase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:pseudouridine synthesis:RNA binding:UDP-glucose 4-epimerase activity:pseudouridylate synthase activity:carbohydrate metabolic process:glucose-1-phosphate thymidylyltransferase activity:biosynthetic process:pseudouridine synthase activity:oxidoreductase activity:racemase and epimerase activity, acting on carbohydrates and derivatives:cellular metabolic process:coenzyme binding:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Galactose metabolism:Galactose metabolism:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Streptomycin biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism:Global:Carbohydrate Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Biosynthesis of Other Secondary Metabolites:Global:Metabolism" 281 "Methyl-accepting chemotaxis protein:Methyl-accepting chemotaxis protein:signal transducer activity:chemotaxis:signal transduction:Cell motility:Cell motility:Signal transduction mechanisms:Signal transduction mechanisms:Cellular processes and signaling:Cellular processes and signaling" 282 "Energy production and conversion:Energy production and conversion:Glycosyltransferase:Glycosyltransferase:Nucleoside-diphosphate-sugar epimerases:Nucleoside-diphosphate-sugar epimerases:SAM-dependent methyltransferases:SAM-dependent methyltransferases:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Glycerol-3-phosphate dehydrogenase:Glycerol-3-phosphate dehydrogenase:Methionine synthase II (cobalamin-independent):Methionine synthase II (cobalamin-independent):Dehydrogenases (flavoproteins):Dehydrogenases (flavoproteins):Predicted sugar phosphatases of the HAD superfamily:Predicted sugar phosphatases of the HAD superfamily:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Glycosyltransferases, probably involved in cell wall biogenesis:Glycosyltransferases, probably involved in cell wall biogenesis:Mn-dependent transcriptional regulator:Mn-dependent transcriptional regulator:Predicted P-loop ATPase fused to an acetyltransferase:Predicted P-loop ATPase fused to an acetyltransferase:Uracil-DNA glycosylase:Uracil-DNA glycosylase:1,4-dihydroxy-2-naphthoate octaprenyltransferase:1,4-dihydroxy-2-naphthoate octaprenyltransferase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:ATP-dependent DNA ligase:ATP-dependent DNA ligase:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Membrane protein involved in the export of O-antigen and teichoic acid:Membrane protein involved in the export of O-antigen and teichoic acid:Choline dehydrogenase and related flavoproteins:Choline dehydrogenase and related flavoproteins:Signal transduction histidine kinase regulating citrate/malate metabolism:Signal transduction histidine kinase regulating citrate/malate metabolism:Transposase and inactivated derivatives:Transposase and inactivated derivatives:Uncharacterized membrane protein:Uncharacterized membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:two-component sensor activity:polysaccharide biosynthetic process:DNA binding:sequence-specific DNA binding transcription factor activity:4-nitrophenylphosphatase activity:5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity:DNA ligase (ATP) activity:glycerol-3-phosphate dehydrogenase activity:prenyltransferase activity:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity:transporter activity:iron ion binding:ATP binding:carbohydrate metabolic process:glycerol-3-phosphate metabolic process:DNA replication:DNA repair:DNA recombination:regulation of transcription, DNA-dependent:protein modification process:transport:potassium ion transport:drug transmembrane transport:signal transduction:metabolic process:methyltransferase activity:zinc ion binding:cation transmembrane transporter activity:cellular amino acid biosynthetic process:biosynthetic process:methionine biosynthetic process:menaquinone biosynthetic process:drug transmembrane transporter activity:antiporter activity:carotenoid biosynthetic process:oxidoreductase activity:oxidoreductase activity, acting on CH-OH group of donors:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen:hydrolase activity:racemase and epimerase activity, acting on carbohydrates and derivatives:ATPase activity:peptidyl-histidine phosphorylation:cellular metabolic process:coenzyme binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Galactose metabolism:Galactose metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Amino sugar and nucleotide sugar metabolism:Amino sugar and nucleotide sugar metabolism:Glycerophospholipid metabolism:Glycerophospholipid metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:DNA replication:DNA replication:Base excision repair:Base excision repair:Nucleotide excision repair:Nucleotide excision repair:Mismatch repair:Mismatch repair:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:dnl1:dnl1:menA:menA:HAD-SF-IIA:HAD-SF-IIA:oxido_grp_1:oxido_grp_1:Chlor_Arch_YYY:Chlor_Arch_YYY:Defense mechanisms:Defense mechanisms:Metabolism of Cofactors and Vitamins:Lipid Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:DNA metabolism:Regulatory functions:Menaquinone and ubiquinone:Enzymes of unknown specificity:DNA replication, recombination, and repair:Small molecule interactions:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Metabolism of Cofactors and Vitamins:Metabolism:Carbohydrate Metabolism:Lipid Metabolism:Global:Regulatory functions:Small molecule interactions:DNA metabolism:DNA replication, recombination, and repair:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Replication and Repair:Genetic Information Processing" 283 "Energy production and conversion:Energy production and conversion:Nucleoside diphosphate kinase:Nucleoside diphosphate kinase:Acetyl-CoA acetyltransferase:Acetyl-CoA acetyltransferase:Zn-dependent protease with chaperone function:Zn-dependent protease with chaperone function:Superoxide dismutase:Superoxide dismutase:Chemotaxis signal transduction protein:Chemotaxis signal transduction protein:BioD-like N-terminal domain of phosphotransacetylase:BioD-like N-terminal domain of phosphotransacetylase:DNA or RNA helicases of superfamily II:DNA or RNA helicases of superfamily II:Cytochrome b subunit of the bc complex:Cytochrome b subunit of the bc complex:Uncharacterized archaeal Zn-finger protein:Uncharacterized archaeal Zn-finger protein:Uncharacterized archaeal coiled-coil protein:Uncharacterized archaeal coiled-coil protein:Ribosomal protein HS6-type (S12/L30/L7a):Ribosomal protein HS6-type (S12/L30/L7a):Heme/copper-type cytochrome/quinol oxidases, subunit 2:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Predicted metal-binding protein:Predicted metal-binding protein:Predicted transcription factor, homolog of eukaryotic MBF1:Predicted transcription factor, homolog of eukaryotic MBF1:Ribosomal protein S28E/S33:Ribosomal protein S28E/S33:Uncharacterized conserved protein:Uncharacterized conserved protein:Putative archaeal flagellar protein C:Putative archaeal flagellar protein C:Predicted exonuclease:Predicted exonuclease:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:Nucleotide transport and metabolism:Nucleotide transport and metabolism:ciliary or flagellar motility:nucleic acid binding:DNA binding:structural constituent of ribosome:catalytic activity:acetyl-CoA C-acetyltransferase activity:acetyl-CoA C-acyltransferase activity:ATP-dependent DNA helicase activity:cytochrome-c oxidase activity:metalloendopeptidase activity:nucleoside diphosphate kinase activity:phosphoserine phosphatase activity:superoxide dismutase activity:signal transducer activity:copper ion binding:protein binding:ATP binding:electron transport:GTP biosynthetic process:UTP biosynthetic process:CTP biosynthetic process:nucleotide-excision repair:regulation of transcription, DNA-dependent:translation:proteolysis:superoxide metabolic process:chemotaxis:signal transduction:phosphate acetyltransferase activity:cobalamin biosynthetic process:aa3-type cytochrome c oxidase:ba3-type cytochrome c oxidase:caa3-type cytochrome c oxidase:cbb3-type cytochrome c oxidase:vesicle-mediated transport:oxidoreductase activity:heme binding:cobyrinic acid a,c-diamide synthase activity:ribosome biogenesis:sequence-specific DNA binding:metal ion binding:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fatty acid metabolism:Fatty acid metabolism:Oxidative phosphorylation:Oxidative phosphorylation:Purine metabolism:Purine metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Glycine serine and threonine metabolism:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine degradation:Geraniol degradation:Geraniol degradation:Benzoate degradation:Benzoate degradation:alpha-Linolenic acid metabolism:alpha-Linolenic acid metabolism:Methane metabolism:Methane metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Two-component system:Two-component system:Bacterial chemotaxis:Bacterial chemotaxis:Ribosome:Ribosome:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00270:TIGR00270:CoxB:CoxB:rpl7ae:rpl7ae:Translation:Cell Motility:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Cellular Processes:Global:Electron transport:Conserved:Energy metabolism:Hypothetical proteins:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Translation:Environmental Information Processing:Signal Transduction:Cellular Processes:Cell Motility:Global:Metabolism:Energy metabolism:Electron transport:Hypothetical proteins:Conserved:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Signal Transduction" 284 "Arginase/agmatinase/formimionoglutamate hydrolase, arginase family:Arginase/agmatinase/formimionoglutamate hydrolase, arginase family:Cysteine synthase:Cysteine synthase:RIO-like serine/threonine protein kinase fused to N-terminal HTH domain:RIO-like serine/threonine protein kinase fused to N-terminal HTH domain:Predicted sugar phosphatases of the HAD superfamily:Predicted sugar phosphatases of the HAD superfamily:Isochorismate synthase:Isochorismate synthase:Imidazolonepropionase and related amidohydrolases:Imidazolonepropionase and related amidohydrolases:Predicted metal-dependent protease of the PAD1/JAB1 superfamily:Predicted metal-dependent protease of the PAD1/JAB1 superfamily:Protein implicated in ribosomal biogenesis, Nop56p homolog:Protein implicated in ribosomal biogenesis, Nop56p homolog:Archaeal flagellins:Archaeal flagellins:Uncharacterized homolog of PrgY (pheromone shutdown protein):Uncharacterized homolog of PrgY (pheromone shutdown protein):GAF domain-containing protein:GAF domain-containing protein:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Outer membrane lipoprotein-sorting protein:Outer membrane lipoprotein-sorting protein:Histidine ammonia-lyase:Histidine ammonia-lyase:Urocanate hydratase:Urocanate hydratase:Uncharacterized conserved protein:Uncharacterized conserved protein:Kynureninase:Kynureninase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:6-phosphofructokinase activity:NAD+ kinase activity:cysteine synthase activity:histidine ammonia-lyase activity:protein kinase CK2 activity:protein tyrosine kinase activity:structural molecule activity:ATP binding:glycolysis:protein phosphorylation:cysteine biosynthetic process from serine:histidine catabolic process:tryptophan catabolic process:cellular component movement:metabolic process:transaminase activity:isochorismate synthase activity:biosynthetic process:NAD biosynthetic process:urocanate hydratase activity:ammonia ligase activity:hydrolase activity:histidine catabolic process to glutamate and formamide:pyridoxal phosphate binding:kynureninase activity:metal ion binding:formimidoylglutamase activity:imidazolonepropionase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Ubiquinone and other terpenoid-quinone biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Cysteine and methionine metabolism:Cysteine and methionine metabolism:Histidine metabolism:Histidine metabolism:Tryptophan metabolism:Tryptophan metabolism:Selenocompound metabolism:Selenocompound metabolism:Nitrogen metabolism:Nitrogen metabolism:Sulfur metabolism:Sulfur metabolism:Biosynthesis of siderophore group nonribosomal peptides:Biosynthesis of siderophore group nonribosomal peptides:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:isochor_syn:isochor_syn:hutI:hutI:hutH:hutH:hutG:hutG:hutU:hutU:HAD-SF-IIA:HAD-SF-IIA:arch_flag_Nterm:arch_flag_Nterm:Metabolism:Amino acids and amines:Enzymes of unknown specificity:Menaquinone and ubiquinone:Energy metabolism:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Energy metabolism:Amino acids and amines:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Global" 285 "Energy production and conversion:Energy production and conversion:3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase:Integral membrane protein possibly involved in chromosome condensation:Integral membrane protein possibly involved in chromosome condensation:Prephenate dehydrogenase:Prephenate dehydrogenase:Thiamine biosynthesis ATP pyrophosphatase:Thiamine biosynthesis ATP pyrophosphatase:Cytosine deaminase and related metal-dependent hydrolases:Cytosine deaminase and related metal-dependent hydrolases:Zn-dependent hydrolases, including glyoxylases:Zn-dependent hydrolases, including glyoxylases:Anthranilate/para-aminobenzoate synthases component II:Anthranilate/para-aminobenzoate synthases component II:FOG: CBS domain:FOG: CBS domain:Predicted hydrolases of the HAD superfamily:Predicted hydrolases of the HAD superfamily:K+ transport systems, NAD-binding component:K+ transport systems, NAD-binding component:Uridine kinase:Uridine kinase:NAD-dependent aldehyde dehydrogenases:NAD-dependent aldehyde dehydrogenases:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase component:Highly conserved protein containing a thioredoxin domain:Highly conserved protein containing a thioredoxin domain:Transcriptional regulators:Transcriptional regulators:Acyl-CoA dehydrogenases:Acyl-CoA dehydrogenases:Pyrimidine reductase, riboflavin biosynthesis:Pyrimidine reductase, riboflavin biosynthesis:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases:Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain):Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain):Predicted DNA binding protein:Predicted DNA binding protein:Site-specific recombinase XerD:Site-specific recombinase XerD:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:alkylbase DNA N-glycosylase activity:acyl-CoA dehydrogenase activity:anthranilate synthase activity:mannose-6-phosphate isomerase activity:prephenate dehydrogenase (NADP+) activity:aminoacyl-tRNA ligase activity:uridine kinase activity:voltage-gated chloride channel activity:ATP binding:GTP binding:mannose metabolic process:electron transport:base-excision repair:DNA recombination:regulation of transcription, DNA-dependent:translation:glutamine metabolic process:tyrosine biosynthetic process:potassium ion transport:chloride transport:microtubule-based process:N-acetyltransferase activity:metabolic process:methyltransferase activity:cation transmembrane transporter activity:5-amino-6-(5-phosphoribosylamino)uracil reductase activity:guanine deaminase activity:prephenate dehydrogenase activity:succinate-semialdehyde dehydrogenase [NAD(P)+] activity:biosynthetic process:thiamine biosynthetic process:riboflavin biosynthetic process:DNA integration:oxidoreductase activity:hydrolase activity:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds:ATPase activity:sequence-specific DNA binding:transition metal ion binding:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity:flavin adenine dinucleotide binding:NADP binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Geraniol degradation:Geraniol degradation:Tyrosine metabolism:Tyrosine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Novobiocin biosynthesis:Naphthalene degradation:Naphthalene degradation:Butanoate metabolism:Butanoate metabolism:Thiamine metabolism:Thiamine metabolism:Riboflavin metabolism:Riboflavin metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Microbial metabolism in diverse environments:Base excision repair:Base excision repair:Sulfur relay system:Sulfur relay system:General function prediction only:General function prediction only:gatE_arch:gatE_arch:ribD_Cterm:ribD_Cterm:udk:udk:trpG_papA:trpG_papA:SPP-like:SPP-like:F420_NP1902A:F420_NP1902A:Defense mechanisms:Defense mechanisms:Xenobiotics Biodegradation and Metabolism:Nucleotide Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Salvage of nucleosides and nucleotides:Protein synthesis:tRNA aminoacylation:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Enzymes of unknown specificity:tRNA aminoacylation:Salvage of nucleosides and nucleotides:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Folding Sorting and Degradation:Carbohydrate Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Information storage and processing:Cellular processes and signaling:Metabolism of Cofactors and Vitamins:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Translation:Xenobiotics Biodegradation and Metabolism:Biosynthesis of Other Secondary Metabolites:Carbohydrate Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Global:Replication and Repair:Folding Sorting and Degradation:Translation:Genetic Information Processing:Unknown function" 286 "Oxyanion-translocating ATPase:Oxyanion-translocating ATPase:FOG: WD40-like repeat:FOG: WD40-like repeat:Erythromycin esterase homolog:Erythromycin esterase homolog:Uncharacterized protein conserved in archaea:Uncharacterized protein conserved in archaea:ATP binding:electron transport:anion transport:arsenite-transmembrane transporting ATPase activity:antimonite-transporting ATPase activity:response to antibiotic:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:arsA:arsA:arch_flag_Nterm:arch_flag_Nterm:Poorly characterized:Poorly characterized:Metabolism:Hypothetical proteins:Conserved:Hypothetical proteins:Conserved:Metabolism" 287 "Sugar kinases, ribokinase family:Sugar kinases, ribokinase family:Predicted transcriptional regulators:Predicted transcriptional regulators:Predicted membrane protein:Predicted membrane protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:polysaccharide biosynthetic process:transport:gas vesicle organization:Transcription:Transcription:Function unknown:Function unknown:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Poorly characterized" 288 "Hemolysins and related proteins containing CBS domains:Hemolysins and related proteins containing CBS domains:Highly conserved protein containing a thioredoxin domain:Highly conserved protein containing a thioredoxin domain:Transcriptional regulator:Transcriptional regulator:DNA binding:catalytic activity:mannose-6-phosphate isomerase activity:mannose metabolic process:regulation of transcription, DNA-dependent:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:Cellular processes and signaling:Information storage and processing:Information storage and processing:Poorly characterized:Cellular processes and signaling:Poorly characterized" 289 "Energy production and conversion:Energy production and conversion:Anaerobic dehydrogenases, typically selenocysteine-containing:Anaerobic dehydrogenases, typically selenocysteine-containing:Fe-S-cluster-containing hydrogenase components 1:Fe-S-cluster-containing hydrogenase components 1:Acetyltransferases:Acetyltransferases:Phytoene/squalene synthetase:Phytoene/squalene synthetase:FOG: PAS/PAC domain:FOG: PAS/PAC domain:Uncharacterized component of anaerobic dehydrogenases:Uncharacterized component of anaerobic dehydrogenases:Bacteriorhodopsin:Bacteriorhodopsin:Polysulphide reductase:Polysulphide reductase:two-component sensor activity:two-component response regulator activity:two-component signal transduction system (phosphorelay):beta-carotene 15,15'-monooxygenase activity:ion channel activity:electron transport:regulation of transcription, DNA-dependent:ion transport:N-acetyltransferase activity:metabolic process:nitrate reductase activity:electron carrier activity:biosynthetic process:oxidoreductase activity:geranylgeranyl-diphosphate geranylgeranyltransferase activity:molybdenum ion binding:chaperone mediated protein folding requiring cofactor:iron-sulfur cluster binding:Lipid transport and metabolism:Lipid transport and metabolism:Carotenoid biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:sensory_box:blh_monoox:blh_monoox:Regulatory functions:Small molecule interactions:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism:Cellular processes and signaling:Global:Regulatory functions:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Poorly characterized:Metabolism:Metabolism of Terpenoids and Polyketides" 290 "hormone activity:zinc ion binding" 291 "Archaeal flagellins:Archaeal flagellins:Putative archaeal flagellar protein D/E:Putative archaeal flagellar protein D/E:ciliary or flagellar motility:structural molecule activity:cellular component movement:Cell motility:Cell motility:Cellular processes and signaling:Cellular processes and signaling" 292 "" 293 "Ca2+/Na+ antiporter:Ca2+/Na+ antiporter:dTDP-glucose pyrophosphorylase:dTDP-glucose pyrophosphorylase:Predicted transcriptional regulator:Predicted transcriptional regulator:sequence-specific DNA binding transcription factor activity:regulation of transcription, DNA-dependent:glucose-1-phosphate thymidylyltransferase activity:biosynthetic process:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Streptomycin biosynthesis:Streptomycin biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:Global:Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Global:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Cellular processes and signaling:Information storage and processing:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites" 294 "Carbamoylphosphate synthase small subunit:Carbamoylphosphate synthase small subunit:Predicted membrane protein:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity:ATP binding:glutamine metabolic process:nitrogen compound metabolic process:biosynthetic process:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Metabolic pathways:Metabolic pathways:Function unknown:Function unknown:OPT_sfam:OPT_sfam:CPSaseIIsmall:CPSaseIIsmall:Nucleotide Metabolism:Global:Amino Acid Metabolism:Metabolism:Global:Metabolism:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Metabolism:Poorly characterized:Amino Acid Metabolism:Nucleotide Metabolism:Pyrimidine ribonucleotide biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Metabolism:Poorly characterized:Metabolism" 295 "Predicted ATPase:Predicted ATPase:Type IV secretory pathway, VirB4 components:Type IV secretory pathway, VirB4 components:Uncharacterized conserved protein:Uncharacterized conserved protein:DNA binding:transposase activity:transposition, DNA-mediated:General function prediction only:General function prediction only:Function unknown:Function unknown:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Poorly characterized:Cellular processes and signaling:Poorly characterized:Cellular processes and signaling" 296 "Uroporphyrinogen-III methylase:Uroporphyrinogen-III methylase:Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Uridylate kinase:Uridylate kinase:Predicted metal-dependent phosphoesterases (PHP family):Predicted metal-dependent phosphoesterases (PHP family):dTDP-D-glucose 4,6-dehydratase:dTDP-D-glucose 4,6-dehydratase:Lysyl-tRNA synthetase (class I):Lysyl-tRNA synthetase (class I):Transcriptional regulators:Transcriptional regulators:Uroporphyrinogen-III synthase:Uroporphyrinogen-III synthase:DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS:DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:DNA binding:sequence-specific DNA binding transcription factor activity:catalytic activity:DNA-directed DNA polymerase activity:DNA-directed RNA polymerase activity:DNA-directed RNA polymerase I activity:DNA-directed RNA polymerase II activity:DNA-directed RNA polymerase III activity:lysine-tRNA ligase activity:uroporphyrin-III C-methyltransferase activity:uroporphyrinogen-III synthase activity:ATP binding:electron transport:pyrimidine nucleotide biosynthetic process:DNA replication:regulation of transcription, DNA-dependent:lysyl-tRNA aminoacylation:porphyrin-containing compound biosynthetic process:zinc ion binding:cellular amino acid biosynthetic process:inositol monophosphate phosphatase activity:uridylate kinase activity:electron carrier activity:transcription regulator activity:tetrapyrrole biosynthetic process:sequence-specific DNA binding:cellular metabolic process:coenzyme binding:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Pyrimidine metabolism:Pyrimidine metabolism:Streptomycin biosynthesis:Streptomycin biosynthesis:Inositol phosphate metabolism:Inositol phosphate metabolism:Porphyrin and chlorophyll metabolism:Porphyrin and chlorophyll metabolism:Aminoacyl-tRNA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:lysS_arch:lysS_arch:TFS_arch:TFS_arch:cobA_cysG_Cterm:cobA_cysG_Cterm:pyrH_arch:pyrH_arch:Nucleotide and nucleoside interconversions:Transcription:Transcription factors:Protein synthesis:tRNA aminoacylation:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Genetic Information Processing:Global:Nucleotide and nucleoside interconversions:Transcription factors:tRNA aminoacylation:Heme, porphyrin, and cobalamin:Purines, pyrimidines, nucleosides, and nucleotides:Transcription:Protein synthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Translation:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Biosynthesis of Other Secondary Metabolites:Genetic Information Processing:Translation:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides" 297 "ATPases involved in chromosome partitioning:ATPases involved in chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:cobalamin biosynthetic process:cobyrinic acid a,c-diamide synthase activity:lp_hng_hel_AbrB:lp_hng_hel_AbrB:DNA interactions:Regulatory functions:DNA interactions:Cellular processes and signaling:Regulatory functions:Cellular processes and signaling" 298 "Glutamine amidotransferase:Glutamine amidotransferase:tRNA and rRNA cytosine-C5-methylases:tRNA and rRNA cytosine-C5-methylases:Phosphate/sulphate permeases:Phosphate/sulphate permeases:Predicted divalent heavy-metal cations transporter:Predicted divalent heavy-metal cations transporter:Predicted ATPase:Predicted ATPase:Carbamoylphosphate synthase small subunit:Carbamoylphosphate synthase small subunit:Uncharacterized conserved protein:Uncharacterized conserved protein:Na+/proline symporter:Na+/proline symporter:Nicotinamide mononucleotide adenylyltransferase:Nicotinamide mononucleotide adenylyltransferase:Mismatch repair ATPase (MutS family):Mismatch repair ATPase (MutS family):Eukaryotic-type DNA primase, catalytic (small) subunit:Eukaryotic-type DNA primase, catalytic (small) subunit:Transcriptional regulators:Transcriptional regulators:Zn-dependent proteases:Zn-dependent proteases:Predicted membrane protein:Predicted membrane protein:Chitinase:Chitinase:Predicted NAD/FAD-dependent oxidoreductase:Predicted NAD/FAD-dependent oxidoreductase:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted membrane-bound mannosyltransferase:Predicted membrane-bound mannosyltransferase:Site-specific recombinase XerD:Site-specific recombinase XerD:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:mannosyltransferase activity:histidine biosynthetic process:nicotinamide-nucleotide adenylyltransferase activity:DNA binding:sequence-specific DNA binding transcription factor activity:RNA binding:DNA primase activity:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity:metalloendopeptidase activity:peroxidase activity:phospholipase A2 activity:pseudouridylate synthase activity:transporter activity:inorganic phosphate transmembrane transporter activity:calcium ion binding:ATP binding:chitin catabolic process:electron transport:DNA replication, synthesis of RNA primer:mismatch repair:DNA recombination:regulation of transcription, DNA-dependent:protein O-linked glycosylation:proteolysis:glutamine metabolic process:phospholipid metabolic process:nitrogen compound metabolic process:transport:phosphate ion transport:response to oxidative stress:metabolic process:endochitinase activity:biosynthetic process:NAD biosynthetic process:pseudouridine synthase activity:DNA integration:lipid catabolic process:oxidoreductase activity:oxidoreductase activity, acting on the CH-CH group of donors:transferase activity, transferring pentosyl groups:heme binding:metal ion transport:carbohydrate binding:mismatched DNA binding:tRNA pseudouridine synthesis:cation binding:sequence-specific DNA binding:metal ion transmembrane transporter activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Alanine aspartate and glutamate metabolism:Histidine metabolism:Histidine metabolism:Nicotinate and nicotinamide metabolism:Nicotinate and nicotinamide metabolism:Metabolic pathways:Metabolic pathways:Biosynthesis of secondary metabolites:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:tRNA_TruD_broad:tRNA_TruD_broad:cyt_tran_rel:cyt_tran_rel:primase_sml:primase_sml:CPSaseIIsmall:CPSaseIIsmall:IMP_synth_hisH:IMP_synth_hisH:TIGR03663:TIGR03663:Amino acid biosynthesis:Histidine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Pyrimidine ribonucleotide biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Amino acid biosynthesis:Protein synthesis:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Histidine family:tRNA and rRNA base modification:Metabolism:DNA replication, recombination, and repair:Pyrimidine ribonucleotide biosynthesis:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Information storage and processing:Global:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Poorly characterized:Metabolism:DNA metabolism:Cellular processes and signaling:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification" 299 "Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins:Predicted membrane protein:Predicted membrane protein:nucleotide binding:nucleic acid binding:protein binding:metabolic process:methyltransferase activity:Replication, recombination and repair:Replication, recombination and repair:Function unknown:Function unknown:Information storage and processing:Information storage and processing:Poorly characterized:Poorly characterized" 300 "Uncharacterized conserved protein:Uncharacterized conserved protein:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:ABC-type sulfate transport system, permease component:ABC-type sulfate transport system, permease component:HD superfamily phosphohydrolases:HD superfamily phosphohydrolases:Metal-dependent hydrolases of the beta-lactamase superfamily III:Metal-dependent hydrolases of the beta-lactamase superfamily III:catalytic activity:transporter activity:transport:hydrolase activity:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:ABC transporters:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:Mo_ABC_porter:Mo_ABC_porter:Cellular processes and signaling:Environmental Information Processing:Membrane Transport:Environmental Information Processing:Poorly characterized:Membrane Transport:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism"