TargetScan_229 megaCluster: 8 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_229 8 0.17 15 0 0.949176 0

Members

Displaying 1 - 30 of 30
11555 adrenergic receptor, beta 2

Details for - - adrenergic receptor, beta 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11555

Tuberculist Genomic Region

12068 blocked early in transport 1 homolog (S. cerevisiae)

Details for - - blocked early in transport 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12068

Tuberculist Genomic Region

14245 lipin 1

Details for - - lipin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14245

Tuberculist Genomic Region

18194 NAD(P) dependent steroid dehydrogenase-like

Details for RP23-307G22.4 - NAD(P) dependent steroid dehydrogenase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18194

Tuberculist Genomic Region

218138 GDP-mannose 4, 6-dehydratase

Details for RP23-459H16.3 - GDP-mannose 4, 6-dehydratase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218138

Tuberculist Genomic Region

22401 zinc finger matrin type 3

Details for - - zinc finger matrin type 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22401

Tuberculist Genomic Region

225326 phosphoinositide-3-kinase, class 3

Details for - - phosphoinositide-3-kinase, class 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225326

Tuberculist Genomic Region

237082 nuclear transport factor 2-like export factor 2

Details for RP23-161L11.3 - nuclear transport factor 2-like export factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237082

Tuberculist Genomic Region

241490 RNA binding motif protein 45

Details for RP23-211L7.2 - RNA binding motif protein 45

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241490

Tuberculist Genomic Region

27061 B cell receptor associated protein 31

Details for RP23-329M9.5 - B cell receptor associated protein 31

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27061

Tuberculist Genomic Region

320271 suppressor of cancer cell invasion

Details for RP23-322M5.1 - suppressor of cancer cell invasion

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320271

Tuberculist Genomic Region

50799 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

Details for - - solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50799

Tuberculist Genomic Region

52715 coiled-coil domain containing 43

Details for RP23-57F11.7 - coiled-coil domain containing 43

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52715

Tuberculist Genomic Region

54607 suppressor of cytokine signaling 6

Details for - - suppressor of cytokine signaling 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54607

Tuberculist Genomic Region

66146 transmembrane protein 57

Details for RP23-191E19.1 - transmembrane protein 57

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66146

Tuberculist Genomic Region

66880 arginine/serine-rich coiled-coil 1

Details for - - arginine/serine-rich coiled-coil 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66880

Tuberculist Genomic Region

67460 2,4-dienoyl CoA reductase 1, mitochondrial

Details for RP23-338J24.3 - 2,4-dienoyl CoA reductase 1, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67460

Tuberculist Genomic Region

67834 isocitrate dehydrogenase 3 (NAD+) alpha

Details for - - isocitrate dehydrogenase 3 (NAD+) alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67834

Tuberculist Genomic Region

69554 kelch domain containing 2

Details for - - kelch domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69554

Tuberculist Genomic Region

70652 transmembrane protein 144

Details for - - transmembrane protein 144

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70652

Tuberculist Genomic Region

74159 acyl-Coenzyme A binding domain containing 5

Details for RP23-280K4.2 - acyl-Coenzyme A binding domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74159

Tuberculist Genomic Region

74600 mitochondrial ribosomal protein L47

Details for - - mitochondrial ribosomal protein L47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74600

Tuberculist Genomic Region

75786 cytoskeleton associated protein 5

Details for RP23-176N9.2 - cytoskeleton associated protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75786

Tuberculist Genomic Region

11757 peroxiredoxin 3

Details for - - peroxiredoxin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11757

Tuberculist Genomic Region

23938 mitogen-activated protein kinase kinase 5

Details for - - mitogen-activated protein kinase kinase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23938

Tuberculist Genomic Region

52469 cytochrome C oxidase assembly factor 3

Details for RP23-281C18.10-001 - cytochrome C oxidase assembly factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52469

Tuberculist Genomic Region

14375 X-ray repair complementing defective repair in Chinese hamster cells 6

Details for - - X-ray repair complementing defective repair in Chinese hamster cells 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14375

Tuberculist Genomic Region

11907 arginyltransferase 1

Details for - - arginyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11907

Tuberculist Genomic Region

272396 threonyl-tRNA synthetase-like 2

Details for - - threonyl-tRNA synthetase-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 272396

Tuberculist Genomic Region

65098 zinc finger, AN1-type domain 6

Details for - - zinc finger, AN1-type domain 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65098

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Dlx1.1 0.133333 0.0000144

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.038 AAACAAAANMA NA 0.74 NGGAGGCGGAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.12 CCGCCT NA 1.24 CTCCGCCT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.58 AGGTCG NA NA 0.99 TTACNTNG NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-669h-3p, mmu-miR-669k 0.703704 0.0000695

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-466f-3p 0.518519 0.0000495

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