PITA_101 megaCluster: 10 Residual: 0.16

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_101 10 0.16 15 0 0.951395 0

Members

Displaying 1 - 33 of 33
11428 aconitase 1

Details for RP23-9F23.1 - aconitase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11428

Tuberculist Genomic Region

22129 tetratricopeptide repeat domain 3

Details for - - tetratricopeptide repeat domain 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22129

Tuberculist Genomic Region

239743 kelch-like 6

Details for - - kelch-like 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 239743

Tuberculist Genomic Region

245688 retinoblastoma binding protein 7

Details for RP23-436I3.1 - retinoblastoma binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245688

Tuberculist Genomic Region

67738 peptidylprolyl isomerase D (cyclophilin D)

Details for - - peptidylprolyl isomerase D (cyclophilin D)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67738

Tuberculist Genomic Region

73086 ribosomal protein S6 kinase, polypeptide 5

Details for - - ribosomal protein S6 kinase, polypeptide 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73086

Tuberculist Genomic Region

98711 retinol dehydrogenase 10 (all-trans)

Details for - - retinol dehydrogenase 10 (all-trans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98711

Tuberculist Genomic Region

100088 regulator of chromosome condensation 1

Details for WI1-2643G14.3 - regulator of chromosome condensation 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100088

Tuberculist Genomic Region

104130 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11

Details for RP23-333P16.5 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104130

Tuberculist Genomic Region

107823 Wolf-Hirschhorn syndrome candidate 1 (human)

Details for - - Wolf-Hirschhorn syndrome candidate 1 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107823

Tuberculist Genomic Region

109658 taxilin alpha

Details for RP23-151A15.8 - taxilin alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109658

Tuberculist Genomic Region

11534 adenosine kinase

Details for - - adenosine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11534

Tuberculist Genomic Region

12499 ectonucleoside triphosphate diphosphohydrolase 5

Details for - - ectonucleoside triphosphate diphosphohydrolase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12499

Tuberculist Genomic Region

18102 NME/NM23 nucleoside diphosphate kinase 1

Details for RP23-378I13.1 - NME/NM23 nucleoside diphosphate kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18102

Tuberculist Genomic Region

20359 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B

Details for - - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20359

Tuberculist Genomic Region

211488 2-aminoethanethiol (cysteamine) dioxygenase

Details for - - 2-aminoethanethiol (cysteamine) dioxygenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211488

Tuberculist Genomic Region

21843 Tia1 cytotoxic granule-associated RNA binding protein-like 1

Details for - - Tia1 cytotoxic granule-associated RNA binding protein-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21843

Tuberculist Genomic Region

231327 phosphoribosyl pyrophosphate amidotransferase

Details for - - phosphoribosyl pyrophosphate amidotransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231327

Tuberculist Genomic Region

244962 sorting nexin 14

Details for AC116713.1 - sorting nexin 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244962

Tuberculist Genomic Region

320506 LMBR1 domain containing 2

Details for - - LMBR1 domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320506

Tuberculist Genomic Region

445007 nucleoporin 85

Details for RP23-392H19.11-001 - nucleoporin 85

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 445007

Tuberculist Genomic Region

50995 ubiquitin-like modifier activating enzyme 2

Details for RP23-349I9.1 - ubiquitin-like modifier activating enzyme 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50995

Tuberculist Genomic Region

52163 calcium/calmodulin-dependent protein kinase I

Details for - - calcium/calmodulin-dependent protein kinase I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52163

Tuberculist Genomic Region

56298 atlastin GTPase 2

Details for - - atlastin GTPase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56298

Tuberculist Genomic Region

64656 mitochondrial ribosomal protein S23

Details for RP23-199A2.5 - mitochondrial ribosomal protein S23

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64656

Tuberculist Genomic Region

66071 ethylmalonic encephalopathy 1

Details for - - ethylmalonic encephalopathy 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66071

Tuberculist Genomic Region

67163 coiled-coil domain containing 47

Details for RP23-81G14.10-001 - coiled-coil domain containing 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67163

Tuberculist Genomic Region

67472 mitochondrial fission regulator 1

Details for - - mitochondrial fission regulator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67472

Tuberculist Genomic Region

67475 ERO1-like beta (S. cerevisiae)

Details for - - ERO1-like beta (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67475

Tuberculist Genomic Region

68477 required for meiotic nuclear division 5 homolog A (S. cerevisiae)

Details for - - required for meiotic nuclear division 5 homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68477

Tuberculist Genomic Region

74196 tetratricopeptide repeat domain 27

Details for - - tetratricopeptide repeat domain 27

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74196

Tuberculist Genomic Region

75570 nonhomologous end-joining factor 1

Details for - - nonhomologous end-joining factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75570

Tuberculist Genomic Region

80905 polymerase (DNA directed), eta (RAD 30 related)

Details for - - polymerase (DNA directed), eta (RAD 30 related)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80905

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ZFP206_01_M01742 0.757576 0.0000000813

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.15 GCGCNTGCGCAC V$ZFP206_01_M01742, V$NRF1_Q6_M00652, NRF1_NRF_full_dimeric_12_1 58 ARAAASAAGAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.43 TCGCGG NA 1.33 NCGCGGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.48 TYGTTT NA NA 0.63 ANNTCGTT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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