PITA_104 megaCluster: 10 Residual: 0.13 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_104	10	0.13	15	0	0.968192	0

Members

Displaying 1 - 27 of 27

106795 transcription factor 19 Details for - - transcription factor 19 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106795 Tuberculist Genomic Region	109242 kinesin family member 24 Details for RP23-328E6.6 - kinesin family member 24 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109242 Tuberculist Genomic Region
17215 minichromosome maintenance deficient 3 (S. cerevisiae) Details for - - minichromosome maintenance deficient 3 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17215 Tuberculist Genomic Region	17216 minichromosome maintenance deficient 2 mitotin (S. cerevisiae) Details for - - minichromosome maintenance deficient 2 mitotin (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17216 Tuberculist Genomic Region
17864 myeloblastosis oncogene-like 1 Details for - - myeloblastosis oncogene-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17864 Tuberculist Genomic Region	18968 polymerase (DNA directed), alpha 1 Details for RP23-53K18.2 - polymerase (DNA directed), alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18968 Tuberculist Genomic Region
18969 polymerase (DNA directed), alpha 2 Details for - - polymerase (DNA directed), alpha 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18969 Tuberculist Genomic Region	215387 non-SMC condensin I complex, subunit H Details for - - non-SMC condensin I complex, subunit H GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 215387 Tuberculist Genomic Region
219072 HAUS augmin-like complex, subunit 4 Details for - - HAUS augmin-like complex, subunit 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 219072 Tuberculist Genomic Region	60411 centromere protein K Details for - - centromere protein K GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 60411 Tuberculist Genomic Region
66531 COX assembly mitochondrial protein 2 Details for - - COX assembly mitochondrial protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66531 Tuberculist Genomic Region	68549 shugoshin-like 2 (S. pombe) Details for - - shugoshin-like 2 (S. pombe) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68549 Tuberculist Genomic Region
106344 replication factor C (activator 1) 4 Details for - - replication factor C (activator 1) 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106344 Tuberculist Genomic Region	110749 chromatin assembly factor 1, subunit B (p60) Details for - - chromatin assembly factor 1, subunit B (p60) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110749 Tuberculist Genomic Region
12419 chromobox 5 Details for - - chromobox 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12419 Tuberculist Genomic Region	12649 checkpoint kinase 1 Details for - - checkpoint kinase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12649 Tuberculist Genomic Region
14056 enhancer of zeste homolog 2 (Drosophila) Details for - - enhancer of zeste homolog 2 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14056 Tuberculist Genomic Region	15201 helicase, lymphoid specific Details for - - helicase, lymphoid specific GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15201 Tuberculist Genomic Region
16728 L1 cell adhesion molecule Details for RP23-373N8.1 - L1 cell adhesion molecule GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16728 Tuberculist Genomic Region	17217 minichromosome maintenance deficient 4 homolog (S. cerevisiae) Details for - - minichromosome maintenance deficient 4 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17217 Tuberculist Genomic Region
18973 polymerase (DNA directed), epsilon Details for - - polymerase (DNA directed), epsilon GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18973 Tuberculist Genomic Region	20452 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 Details for - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20452 Tuberculist Genomic Region
218973 WD repeat and HMG-box DNA binding protein 1 Details for - - WD repeat and HMG-box DNA binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218973 Tuberculist Genomic Region	22390 WEE 1 homolog 1 (S. pombe) Details for - - WEE 1 homolog 1 (S. pombe) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22390 Tuberculist Genomic Region
70472 ATPase family, AAA domain containing 2 Details for - - ATPase family, AAA domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70472 Tuberculist Genomic Region	75216 centrosomal protein 128 Details for - - centrosomal protein 128 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75216 Tuberculist Genomic Region
76843 denticleless homolog (Drosophila) Details for - - denticleless homolog (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76843 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_E2F_03_M00516	0.444444	0.0000000000458

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.022	CGSTTCCCGCS	NA	51	AAAAAAAAGAAA	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.62	TCCCGC	V$E2F4_Q6_M02090	2.21	TTCCCGCG

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.59	TATTGC	NA	NA	0.72	GTAGTAGT	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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