PITA_115 megaCluster: 8 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_115 8 0.24 15 0 0.897868 0

Members

Displaying 1 - 24 of 24
100532 RELT-like 1

Details for - - RELT-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100532

Tuberculist Genomic Region

12315 calmodulin 3

Details for - - calmodulin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12315

Tuberculist Genomic Region

12412 chromobox 1

Details for RP23-353J21.1 - chromobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12412

Tuberculist Genomic Region

14385 solute carrier family 37 (glucose-6-phosphate transporter), member 4

Details for - - solute carrier family 37 (glucose-6-phosphate transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14385

Tuberculist Genomic Region

15185 histone deacetylase 6

Details for RP23-198C2.1 - histone deacetylase 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15185

Tuberculist Genomic Region

15191 hepatoma-derived growth factor

Details for - - hepatoma-derived growth factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15191

Tuberculist Genomic Region

19366 RAD54 like (S. cerevisiae)

Details for RP23-383D12.1 - RAD54 like (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19366

Tuberculist Genomic Region

208194 endo/exonuclease (5'-3'), endonuclease G-like

Details for - - endo/exonuclease (5'-3'), endonuclease G-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208194

Tuberculist Genomic Region

212377 MMS22-like, DNA repair protein

Details for - - MMS22-like, DNA repair protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212377

Tuberculist Genomic Region

241627 WD repeat domain 76

Details for RP23-273B19.3 - WD repeat domain 76

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241627

Tuberculist Genomic Region

27214 DBF4 homolog (S. cerevisiae)

Details for - - DBF4 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27214

Tuberculist Genomic Region

330502 zinc finger protein 82

Details for - - zinc finger protein 82

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330502

Tuberculist Genomic Region

57373 A kinase (PRKA) interacting protein 1

Details for - - A kinase (PRKA) interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57373

Tuberculist Genomic Region

67144 leucine rich repeat containing 40

Details for - - leucine rich repeat containing 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67144

Tuberculist Genomic Region

68603 phosphomevalonate kinase

Details for - - phosphomevalonate kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68603

Tuberculist Genomic Region

83409 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2

Details for - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83409

Tuberculist Genomic Region

83815 centromere protein Q

Details for - - centromere protein Q

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83815

Tuberculist Genomic Region

103268 centrosomal protein 57-like 1

Details for - - centrosomal protein 57-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103268

Tuberculist Genomic Region

105377 ankyrin repeat domain 32

Details for - - ankyrin repeat domain 32

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105377

Tuberculist Genomic Region

12041 branched chain ketoacid dehydrogenase kinase

Details for - - branched chain ketoacid dehydrogenase kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12041

Tuberculist Genomic Region

19184 protease (prosome, macropain) 26S subunit, ATPase 5

Details for RP23-418O11.3 - protease (prosome, macropain) 26S subunit, ATPase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19184

Tuberculist Genomic Region

226594 RCSD domain containing 1

Details for - - RCSD domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226594

Tuberculist Genomic Region

69962 methyltransferase like 18

Details for - - methyltransferase like 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69962

Tuberculist Genomic Region

78752 chondroitin sulfate N-acetylgalactosaminyltransferase 2

Details for - - chondroitin sulfate N-acetylgalactosaminyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78752

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Sox8.1, V_SOX8_03_M02808 0.166667, 0.166667 0.0000261

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
200 AAATNTTTWWW NA 150 AAAANMAAACAN NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.64 TCGCGC V$ZFP161_04_M02933, V$E2F_03_M00516, V$E2F_Q6_01_M00920, V$E2F1_Q3_01_M00938, V$E2F_01_M00024, Zfp161.2, E2F2.1, E2F3.1, Zfp161.1 1.89 CGCGTCTG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 ACGCGG NA NA 0.81 TACRGCCT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments