PITA_119 megaCluster: 4 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_119 4 0.19 9 0 0.571605 0.999

Members

Displaying 1 - 38 of 38
102132 RIKEN cDNA E230013L22 gene

Details for - - RIKEN cDNA E230013L22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102132

Tuberculist Genomic Region

12483 CD22 antigen

Details for - - CD22 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12483

Tuberculist Genomic Region

12862 cytochrome c oxidase subunit VIa polypeptide 2

Details for - - cytochrome c oxidase subunit VIa polypeptide 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12862

Tuberculist Genomic Region

12982 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

Details for - - colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12982

Tuberculist Genomic Region

14051 eyes absent 4 homolog (Drosophila)

Details for - - eyes absent 4 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14051

Tuberculist Genomic Region

16411 integrin alpha X

Details for - - integrin alpha X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16411

Tuberculist Genomic Region

16658 v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)

Details for RP23-333A18.1 - v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16658

Tuberculist Genomic Region

19158 cytohesin 2

Details for - - cytohesin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19158

Tuberculist Genomic Region

211550 TRAF-interacting protein with forkhead-associated domain

Details for - - TRAF-interacting protein with forkhead-associated domain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211550

Tuberculist Genomic Region

22318 vesicle-associated membrane protein 2

Details for RP23-26L6.8 - vesicle-associated membrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22318

Tuberculist Genomic Region

269003 Sin3A associated protein

Details for - - Sin3A associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269003

Tuberculist Genomic Region

27226 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)

Details for - - phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27226

Tuberculist Genomic Region

328309 predicted gene 9776

Details for - - predicted gene 9776

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328309

Tuberculist Genomic Region

381524 expressed sequence AI427809

Details for - - expressed sequence AI427809

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381524

Tuberculist Genomic Region

404336 olfactory receptor 1380

Details for RP23-58E13.7 - olfactory receptor 1380

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 404336

Tuberculist Genomic Region

52915 zinc finger, MIZ-type containing 2

Details for RP23-198N14.8 - zinc finger, MIZ-type containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52915

Tuberculist Genomic Region

66218 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9

Details for - - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66218

Tuberculist Genomic Region

66278 small integral membrane protein 20

Details for - - small integral membrane protein 20

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66278

Tuberculist Genomic Region

70240 UFM1-specific peptidase 1

Details for - - UFM1-specific peptidase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70240

Tuberculist Genomic Region

74211 pleckstrin homology domain containing, family F (with FYVE domain) member 2

Details for RP23-130H14.2 - pleckstrin homology domain containing, family F (with FYVE domain) member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71801

Tuberculist Genomic Region

74243 RIKEN cDNA 1700017B05 gene

Details for - - RIKEN cDNA 1700017B05 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74211

Tuberculist Genomic Region

76633 SLX4 interacting protein

Details for RP23-173O12.2 - SLX4 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74243

Tuberculist Genomic Region

81913 RIKEN cDNA 1700112E06 gene

Details for - - RIKEN cDNA 1700112E06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76633

Tuberculist Genomic Region

99543 BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)

Details for - - BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 81913

Tuberculist Genomic Region

14190 olfactomedin-like 3

Details for DN-252N9.4 - olfactomedin-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99543

Tuberculist Genomic Region

19731 fibrinogen-like protein 2

Details for - - fibrinogen-like protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14190

Tuberculist Genomic Region

212127 solute carrier family 39 (zinc transporter), member 7

Details for - - solute carrier family 39 (zinc transporter), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14977

Tuberculist Genomic Region

215772 jumonji, AT rich interactive domain 2

Details for - - jumonji, AT rich interactive domain 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16468

Tuberculist Genomic Region

244864 ral guanine nucleotide dissociation stimulator,-like 1

Details for - - ral guanine nucleotide dissociation stimulator,-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19731

Tuberculist Genomic Region

269800 proline and serine rich 1

Details for - - proline and serine rich 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212127

Tuberculist Genomic Region

387228 androglobin

Details for - - androglobin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215772

Tuberculist Genomic Region

434219 layilin

Details for - - layilin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244864

Tuberculist Genomic Region

67092 zinc finger protein 384

Details for - - zinc finger protein 384

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269800

Tuberculist Genomic Region

73893 microRNA 30d

Details for - - microRNA 30d

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387228

Tuberculist Genomic Region

80751 tripartite motif-containing 30C

Details for - - tripartite motif-containing 30C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434219

Tuberculist Genomic Region

Details for RP23-101F14.1 - glycine amidinotransferase (L-arginine:glycine amidinotransferase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67092

Tuberculist Genomic Region

Details for - - transmembrane protein 202

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73893

Tuberculist Genomic Region

Details for - - ring finger protein 34

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80751

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.43 CCCCGCCCCCC V$SP1SP3_Q4_M01219, V$ETF_Q6_M00695, V$CACBINDINGPROTEIN_Q6_M00720, V$FKLF_Q5_M01837, V$EGR_Q6_M00807, V$RNF96_01_M01199, Zbtb7b.1, Glis2.1, ZNF740_C2H2_full_monomeric_10_1, Zfp740_C2H2_DBD_monomeric_10_1 0.019 TTYTCYTTTGTT Sox4.2, Sox11.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.01 CCCGCA Gcm1.1, GCM2_GCM_DBD_monomeric_10_1 1.14 ANGCCGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.68 CGCGAT NA NA 0.77 GTCGCGCT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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