PITA_122 megaCluster: 10 Residual: 0.22

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_122 10 0.22 9 0 0.714862 0.504

Members

Displaying 1 - 32 of 32
12663 choroideremia-like

Details for - - choroideremia-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12663

Tuberculist Genomic Region

14865 glutathione S-transferase, mu 4

Details for RP23-214E3.8 - glutathione S-transferase, mu 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14865

Tuberculist Genomic Region

16211 karyopherin (importin) beta 1

Details for RP23-81D2.3 - karyopherin (importin) beta 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16211

Tuberculist Genomic Region

16553 kinesin family member 13A

Details for - - kinesin family member 13A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16553

Tuberculist Genomic Region

18749 protein kinase, cAMP dependent, catalytic, beta

Details for - - protein kinase, cAMP dependent, catalytic, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18749

Tuberculist Genomic Region

210710 growth factor receptor bound protein 2-associated protein 3

Details for RP23-184H6.3 - growth factor receptor bound protein 2-associated protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 210710

Tuberculist Genomic Region

21780 transcription factor A, mitochondrial

Details for - - transcription factor A, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21780

Tuberculist Genomic Region

218639 ADP-ribosylation factor-like 15

Details for - - ADP-ribosylation factor-like 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218639

Tuberculist Genomic Region

227059 solute carrier family 39 (zinc transporter), member 10

Details for - - solute carrier family 39 (zinc transporter), member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227059

Tuberculist Genomic Region

328186 predicted gene 10336

Details for - - predicted gene 10336

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328186

Tuberculist Genomic Region

329506 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2

Details for RP23-34E24.1 - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329506

Tuberculist Genomic Region

333433 glycerol-3-phosphate dehydrogenase 1-like

Details for - - glycerol-3-phosphate dehydrogenase 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 333433

Tuberculist Genomic Region

54486 hematopoietic prostaglandin D synthase

Details for - - hematopoietic prostaglandin D synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54486

Tuberculist Genomic Region

56442 serine incorporator 1

Details for - - serine incorporator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56442

Tuberculist Genomic Region

67241 structural maintenance of chromosomes 6

Details for - - structural maintenance of chromosomes 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67241

Tuberculist Genomic Region

68659 family with sequence similarity 198, member B

Details for - - family with sequence similarity 198, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68659

Tuberculist Genomic Region

69024 sorting nexin 15

Details for - - sorting nexin 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69024

Tuberculist Genomic Region

74205 acyl-CoA synthetase long-chain family member 3

Details for - - acyl-CoA synthetase long-chain family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74205

Tuberculist Genomic Region

18472 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1

Details for RP23-194P5.2 - platelet-activating factor acetylhydrolase, isoform 1b, subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18472

Tuberculist Genomic Region

19360 RAD50 homolog (S. cerevisiae)

Details for RP23-239O19.3 - RAD50 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19360

Tuberculist Genomic Region

210544 TBC1 domain family, member 31

Details for - - TBC1 domain family, member 31

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 210544

Tuberculist Genomic Region

22099 translin

Details for - - translin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22099

Tuberculist Genomic Region

229499 Fc receptor-like 1

Details for - - Fc receptor-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229499

Tuberculist Genomic Region

239743 kelch-like 6

Details for - - kelch-like 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 239743

Tuberculist Genomic Region

242474 transmembrane protein 245

Details for RP23-455B1.3 - transmembrane protein 245

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 242474

Tuberculist Genomic Region

432940 family with sequence similarity 105, member B

Details for - - family with sequence similarity 105, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432940

Tuberculist Genomic Region

56473 fatty acid desaturase 2

Details for - - fatty acid desaturase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56473

Tuberculist Genomic Region

66471 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E

Details for - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66471

Tuberculist Genomic Region

68323 nudix (nucleoside diphosphate linked moiety X)-type motif 22

Details for - - nudix (nucleoside diphosphate linked moiety X)-type motif 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68323

Tuberculist Genomic Region

70223 asparaginyl-tRNA synthetase

Details for - - asparaginyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70223

Tuberculist Genomic Region

71878 family with sequence similarity 83, member D

Details for RP23-119H5.1 - family with sequence similarity 83, member D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71878

Tuberculist Genomic Region

74131 SAM and SH3 domain containing 3

Details for RP23-351G20.2 - SAM and SH3 domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74131

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_SP1_Q6_M00196, V_SP1_Q2_01_M00933 1, 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000074 TTTNTYTTCTTT NA 5700 ATWNATWTNTTA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.11 CGTCGC NA 1.23 CGGNNCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.47 TCGTAC NA NA 0.65 NGAAATTG NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-142-3p 0.62069 0.0000277

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments