PITA_133 megaCluster: 1 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_133 1 0.24 9 0 0.513117 1

Members

Displaying 1 - 38 of 38
16362 interferon regulatory factor 1

Details for RP23-303F24.1 - interferon regulatory factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16362

Tuberculist Genomic Region

18128 notch 1

Details for RP23-306D20.12-001 - notch 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18128

Tuberculist Genomic Region

212772 ADP-ribosylation factor-like 14 effector protein

Details for RP23-12N7.2 - ADP-ribosylation factor-like 14 effector protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212772

Tuberculist Genomic Region

214944 MOB kinase activator 3B

Details for RP23-454N16.6 - MOB kinase activator 3B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214944

Tuberculist Genomic Region

233065 alkB, alkylation repair homolog 6 (E. coli)

Details for - - alkB, alkylation repair homolog 6 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233065

Tuberculist Genomic Region

240690 suppression of tumorigenicity 18

Details for - - suppression of tumorigenicity 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240690

Tuberculist Genomic Region

378462 MORN repeat containing 2

Details for - - MORN repeat containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 378462

Tuberculist Genomic Region

66598 RIKEN cDNA 3110001I22 gene

Details for - - RIKEN cDNA 3110001I22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66598

Tuberculist Genomic Region

70435 inverted formin, FH2 and WH2 domain containing

Details for - - inverted formin, FH2 and WH2 domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70435

Tuberculist Genomic Region

74442 sphingomyelin synthase 2

Details for - - sphingomyelin synthase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74442

Tuberculist Genomic Region

100504169 predicted gene, 20098

Details for - - predicted gene, 20098

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504169

Tuberculist Genomic Region

104709 phosphoinositide-3-kinase, regulatory subunit 6

Details for RP23-432M23.3 - phosphoinositide-3-kinase, regulatory subunit 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104709

Tuberculist Genomic Region

11936 FXYD domain-containing ion transport regulator 2

Details for - - FXYD domain-containing ion transport regulator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11936

Tuberculist Genomic Region

12633 CASP8 and FADD-like apoptosis regulator

Details for - - CASP8 and FADD-like apoptosis regulator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12633

Tuberculist Genomic Region

14362 frizzled homolog 1 (Drosophila)

Details for - - frizzled homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14362

Tuberculist Genomic Region

14744 G-protein coupled receptor 65

Details for - - G-protein coupled receptor 65

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14744

Tuberculist Genomic Region

15901 inhibitor of DNA binding 1

Details for RP23-106A3.1 - inhibitor of DNA binding 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15901

Tuberculist Genomic Region

15903 inhibitor of DNA binding 3

Details for RP23-118A9.1 - inhibitor of DNA binding 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15903

Tuberculist Genomic Region

170716 cytochrome P450, family 4, subfamily f, polypeptide 13

Details for - - cytochrome P450, family 4, subfamily f, polypeptide 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170716

Tuberculist Genomic Region

17261 myocyte enhancer factor 2D

Details for - - myocyte enhancer factor 2D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17261

Tuberculist Genomic Region

17354 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10

Details for RP23-349H7.1 - myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17354

Tuberculist Genomic Region

18591 platelet derived growth factor, B polypeptide

Details for - - platelet derived growth factor, B polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18591

Tuberculist Genomic Region

214459 formin binding protein 1-like

Details for - - formin binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214459

Tuberculist Genomic Region

22164 tumor necrosis factor (ligand) superfamily, member 4

Details for - - tumor necrosis factor (ligand) superfamily, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22164

Tuberculist Genomic Region

227696 phytanoyl-CoA dioxygenase domain containing 1

Details for RP23-395P6.1 - phytanoyl-CoA dioxygenase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227696

Tuberculist Genomic Region

23959 5' nucleotidase, ecto

Details for - - 5' nucleotidase, ecto

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23959

Tuberculist Genomic Region

240354 mucosa associated lymphoid tissue lymphoma translocation gene 1

Details for - - mucosa associated lymphoid tissue lymphoma translocation gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240354

Tuberculist Genomic Region

29815 breast cancer anti-estrogen resistance 3

Details for - - breast cancer anti-estrogen resistance 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29815

Tuberculist Genomic Region

387512 taste receptor, type 2, member 135

Details for - - taste receptor, type 2, member 135

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387512

Tuberculist Genomic Region

54519 amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein

Details for RP23-114M13.3 - amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54519

Tuberculist Genomic Region

68544 RIKEN cDNA 2310036O22 gene

Details for - - RIKEN cDNA 2310036O22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68544

Tuberculist Genomic Region

69573 hypoxia inducible lipid droplet associated

Details for - - hypoxia inducible lipid droplet associated

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69573

Tuberculist Genomic Region

70640 DCP2 decapping enzyme homolog (S. cerevisiae)

Details for - - DCP2 decapping enzyme homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70640

Tuberculist Genomic Region

73379 discoidin, CUB and LCCL domain containing 2

Details for RP24-293N14.1 - discoidin, CUB and LCCL domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73379

Tuberculist Genomic Region

76073 polycomb group ring finger 5

Details for - - polycomb group ring finger 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76073

Tuberculist Genomic Region

78655 eukaryotic translation initiation factor 3, subunit J1

Details for - - eukaryotic translation initiation factor 3, subunit J1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78655

Tuberculist Genomic Region

83921 transmembrane protein 2

Details for - - transmembrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83921

Tuberculist Genomic Region

223453 death-associated protein

Details for - - death-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223453

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_DR1_Q3_M00762 0.594595 0.00000116

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000000025 AARAAARAAAAA NA 0.04 NAGAGWGGNNAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.85 CGGAGC NA 0.98 GAACCCGC

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.47 CGTCGA NA NA 0.55 ACTCNTCG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-539-3p 0.272727 0.0000412

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