PITA_139 megaCluster: 11 Residual: 0.28

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_139 11 0.28 15 0 0.853014 0

Members

Displaying 1 - 42 of 42
100042480 NHS-like 2

Details for RP23-448C18.1 - NHS-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100042480

Tuberculist Genomic Region

19224 arylsulfatase B

Details for - - arylsulfatase B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11881

Tuberculist Genomic Region

19387 prostaglandin-endoperoxide synthase 1

Details for RP23-454A14.3 - prostaglandin-endoperoxide synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19224

Tuberculist Genomic Region

231803 RAN GTPase activating protein 1

Details for - - RAN GTPase activating protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19387

Tuberculist Genomic Region

381318 methylphosphate capping enzyme

Details for - - methylphosphate capping enzyme

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231803

Tuberculist Genomic Region

56224 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)

Details for - - NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381318

Tuberculist Genomic Region

66622 tetraspanin 5

Details for - - tetraspanin 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56224

Tuberculist Genomic Region

67036 ubiquitin protein ligase E3 component n-recognin 7 (putative)

Details for - - ubiquitin protein ligase E3 component n-recognin 7 (putative)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66622

Tuberculist Genomic Region

74412 mitochondrial ribosomal protein L45

Details for RP23-157O10.1 - mitochondrial ribosomal protein L45

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67036

Tuberculist Genomic Region

108902 GLE1 RNA export mediator (yeast)

Details for RP23-443G7.5 - GLE1 RNA export mediator (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74412

Tuberculist Genomic Region

14385 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1

Details for - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108902

Tuberculist Genomic Region

14768 solute carrier family 37 (glucose-6-phosphate transporter), member 4

Details for - - solute carrier family 37 (glucose-6-phosphate transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14385

Tuberculist Genomic Region

15191 LanC (bacterial lantibiotic synthetase component C)-like 1

Details for AC133187.1 - LanC (bacterial lantibiotic synthetase component C)-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14768

Tuberculist Genomic Region

20918 hepatoma-derived growth factor

Details for - - hepatoma-derived growth factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15191

Tuberculist Genomic Region

214901 eukaryotic translation initiation factor 1

Details for RP23-392I3.1 - eukaryotic translation initiation factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20918

Tuberculist Genomic Region

219022 CTF18, chromosome transmission fidelity factor 18

Details for - - CTF18, chromosome transmission fidelity factor 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214901

Tuberculist Genomic Region

228033 tetratricopeptide repeat domain 5

Details for - - tetratricopeptide repeat domain 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 219022

Tuberculist Genomic Region

229841 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)

Details for RP23-146O7.1 - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228033

Tuberculist Genomic Region

232334 centromere protein E

Details for - - centromere protein E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229841

Tuberculist Genomic Region

232910 vestigial like 4 (Drosophila)

Details for - - vestigial like 4 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232334

Tuberculist Genomic Region

387175 adaptor-related protein complex 2, sigma 1 subunit

Details for - - adaptor-related protein complex 2, sigma 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232910

Tuberculist Genomic Region

66442 microRNA 15b

Details for - - microRNA 15b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387175

Tuberculist Genomic Region

66863 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)

Details for RP23-431D4.3 - SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66442

Tuberculist Genomic Region

73677 leucine-zipper-like transcriptional regulator, 1

Details for - - leucine-zipper-like transcriptional regulator, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66863

Tuberculist Genomic Region

94275 proteasome (prosome, macropain) subunit, alpha type, 8

Details for - - proteasome (prosome, macropain) subunit, alpha type, 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73677

Tuberculist Genomic Region

14651 melanoma antigen, family D, 1

Details for RP23-272D10.5 - melanoma antigen, family D, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94275

Tuberculist Genomic Region

12236 hydroxyacyl glutathione hydrolase

Details for - - hydroxyacyl glutathione hydrolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14651

Tuberculist Genomic Region

140500 budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)

Details for RP23-204G5.1 - budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12236

Tuberculist Genomic Region

16571 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3

Details for RP23-242K15.11-002 - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140500

Tuberculist Genomic Region

19366 kinesin family member 4

Details for RP23-213F21.3 - kinesin family member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16571

Tuberculist Genomic Region

208836 RAD54 like (S. cerevisiae)

Details for RP23-383D12.1 - RAD54 like (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19366

Tuberculist Genomic Region

209737 Fanconi anemia, complementation group I

Details for - - Fanconi anemia, complementation group I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208836

Tuberculist Genomic Region

54392 kinesin family member 15

Details for - - kinesin family member 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209737

Tuberculist Genomic Region

66934 non-SMC condensin I complex, subunit G

Details for - - non-SMC condensin I complex, subunit G

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54392

Tuberculist Genomic Region

71085 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)

Details for RP23-430P1.2 - DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66934

Tuberculist Genomic Region

76044 Rho GTPase activating protein 19

Details for - - Rho GTPase activating protein 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71085

Tuberculist Genomic Region

12704 non-SMC condensin II complex, subunit G2

Details for - - non-SMC condensin II complex, subunit G2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76044

Tuberculist Genomic Region

15366 citron

Details for - - citron

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12704

Tuberculist Genomic Region

18817 hyaluronan mediated motility receptor (RHAMM)

Details for RP23-382C18.3 - hyaluronan mediated motility receptor (RHAMM)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15366

Tuberculist Genomic Region

208628 polo-like kinase 1

Details for - - polo-like kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18817

Tuberculist Genomic Region

54141 kinetochore associated 1

Details for - - kinetochore associated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208628

Tuberculist Genomic Region

Details for RP23-185A18.13-001 - sperm associated antigen 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54141

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_E2F1_Q6_01_M00940 0.195122 0.0000386

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000019 TAAAAAACAAA NA 110 ANWGAAAKTTMA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.18 GACGCG NA 1.31 CTTGCGCG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.46 AGCCCG NA NA 0.75 GTCCNCCG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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