PITA_146 megaCluster: 10 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_146 10 0.21 14 0 0.888119 0

Members

Displaying 1 - 24 of 24
20877 aurora kinase B

Details for RP23-19I2.1 - aurora kinase B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20877

Tuberculist Genomic Region

229473 RIKEN cDNA D930015E06 gene

Details for - - RIKEN cDNA D930015E06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229473

Tuberculist Genomic Region

235559 topoisomerase (DNA) II binding protein 1

Details for - - topoisomerase (DNA) II binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235559

Tuberculist Genomic Region

73341 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6

Details for RP23-372E6.1 - Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73341

Tuberculist Genomic Region

78658 non-SMC condensin II complex, subunit D3

Details for - - non-SMC condensin II complex, subunit D3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78658

Tuberculist Genomic Region

98828 cell division cycle 123

Details for RP23-307E15.1 - cell division cycle 123

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98828

Tuberculist Genomic Region

105670 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2

Details for - - regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105670

Tuberculist Genomic Region

108911 regulator of chromosome condensation 2

Details for RP23-275J10.2 - regulator of chromosome condensation 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108911

Tuberculist Genomic Region

110173 mannosidase, beta A, lysosomal

Details for - - mannosidase, beta A, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110173

Tuberculist Genomic Region

14104 fatty acid synthase

Details for RP23-99M13.6 - fatty acid synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14104

Tuberculist Genomic Region

14235 forkhead box M1

Details for - - forkhead box M1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14235

Tuberculist Genomic Region

17345 antigen identified by monoclonal antibody Ki 67

Details for - - antigen identified by monoclonal antibody Ki 67

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17345

Tuberculist Genomic Region

17864 myeloblastosis oncogene-like 1

Details for - - myeloblastosis oncogene-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17864

Tuberculist Genomic Region

18969 polymerase (DNA directed), alpha 2

Details for - - polymerase (DNA directed), alpha 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18969

Tuberculist Genomic Region

20460 Scl/Tal1 interrupting locus

Details for RP23-295C20.5 - Scl/Tal1 interrupting locus

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20460

Tuberculist Genomic Region

215387 non-SMC condensin I complex, subunit H

Details for - - non-SMC condensin I complex, subunit H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215387

Tuberculist Genomic Region

217216 cDNA sequence BC030867

Details for RP23-461C4.3 - cDNA sequence BC030867

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217216

Tuberculist Genomic Region

231506 lin-54 homolog (C. elegans)

Details for - - lin-54 homolog (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231506

Tuberculist Genomic Region

27401 S-phase kinase-associated protein 2 (p45)

Details for - - S-phase kinase-associated protein 2 (p45)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27401

Tuberculist Genomic Region

60411 centromere protein K

Details for - - centromere protein K

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60411

Tuberculist Genomic Region

68549 shugoshin-like 2 (S. pombe)

Details for - - shugoshin-like 2 (S. pombe)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68549

Tuberculist Genomic Region

71643 RIKEN cDNA 4930422G04 gene

Details for - - RIKEN cDNA 4930422G04 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71643

Tuberculist Genomic Region

74016 PHD finger protein 19

Details for RP23-9N11.3 - PHD finger protein 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74016

Tuberculist Genomic Region

74741 C2 calcium-dependent domain containing 5

Details for - - C2 calcium-dependent domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74741

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_HES1_Q2_M01009 0.708333 0.000000336

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
1600000 AWTTTCAAA V$TBX18_01_M01262 6600000 ATRTTARKAAWT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.42 CGCTCG NA 1.67 CCNCGCGG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.69 CNCGGTAA NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-1197 0.857143 0.0000225

3p UTR TargetScan

miRNAs percTargets pValue
NA

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