PITA_169 megaCluster: 11 Residual: 0.29

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_169 11 0.29 12 0 0.803508 0.024

Members

Displaying 1 - 21 of 21
100503331 high mobility group nucleosomal binding domain 2 pseudogene

Details for - - high mobility group nucleosomal binding domain 2 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503331

Tuberculist Genomic Region

13682 eukaryotic translation initiation factor 4A2

Details for - - eukaryotic translation initiation factor 4A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13682

Tuberculist Genomic Region

20024 SUB1 homolog (S. cerevisiae)

Details for - - SUB1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20024

Tuberculist Genomic Region

20503 solute carrier family 16 (monocarboxylic acid transporters), member 7

Details for - - solute carrier family 16 (monocarboxylic acid transporters), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20503

Tuberculist Genomic Region

21933 tumor necrosis factor receptor superfamily, member 10b

Details for - - tumor necrosis factor receptor superfamily, member 10b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21933

Tuberculist Genomic Region

27398 mitochondrial ribosomal protein L2

Details for RP23-76I16.2 - mitochondrial ribosomal protein L2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27398

Tuberculist Genomic Region

329154 ankyrin repeat domain 44

Details for - - ankyrin repeat domain 44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329154

Tuberculist Genomic Region

331004 solute carrier family 9 (sodium/hydrogen exchanger), member 9

Details for - - solute carrier family 9 (sodium/hydrogen exchanger), member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 331004

Tuberculist Genomic Region

56424 STIP1 homology and U-Box containing protein 1

Details for - - STIP1 homology and U-Box containing protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56424

Tuberculist Genomic Region

58193 exostoses (multiple)-like 2

Details for - - exostoses (multiple)-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58193

Tuberculist Genomic Region

67629 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)

Details for - - SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67629

Tuberculist Genomic Region

12315 calmodulin 3

Details for - - calmodulin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12315

Tuberculist Genomic Region

12763 cytidine monophospho-N-acetylneuraminic acid hydroxylase

Details for RP23-80C18.1 - cytidine monophospho-N-acetylneuraminic acid hydroxylase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12763

Tuberculist Genomic Region

14456 growth arrest specific 6

Details for - - growth arrest specific 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14456

Tuberculist Genomic Region

16010 insulin-like growth factor binding protein 4

Details for RP23-333D2.6 - insulin-like growth factor binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16010

Tuberculist Genomic Region

19075 DNA primase, p49 subunit

Details for - - DNA primase, p49 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19075

Tuberculist Genomic Region

20405 SH3-domain GRB2-like 1

Details for - - SH3-domain GRB2-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20405

Tuberculist Genomic Region

20873 polo-like kinase 4

Details for - - polo-like kinase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20873

Tuberculist Genomic Region

73873 family with sequence similarity 161, member A

Details for RP23-160F12.1 - family with sequence similarity 161, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73873

Tuberculist Genomic Region

98828 cell division cycle 123

Details for RP23-307E15.1 - cell division cycle 123

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98828

Tuberculist Genomic Region

22137 Ttk protein kinase

Details for - - Ttk protein kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22137

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
FOXB1_forkhead_DBD_dimeric_18_1 0.2 0.0000161

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0014 AMAAAAGGAAAA NA 9.2 NAAGYTTTCTG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.3 CGCGGA NA NA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.68 CCGCGC NA NA 0.8 CTCAATGC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-374c 0.473684 0.0000734

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