PITA_17 megaCluster: 1 Residual: 0.19 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_17	1	0.19	15	0	0.93486	0

Members

Displaying 1 - 31 of 31

108900 CD276 antigen Details for - - CD276 antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 102657 Tuberculist Genomic Region	11847 family with sequence similarity 72, member A Details for - - family with sequence similarity 72, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108900 Tuberculist Genomic Region
14283 arginase type II Details for - - arginase type II GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11847 Tuberculist Genomic Region	14674 fos-like antigen 1 Details for - - fos-like antigen 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14283 Tuberculist Genomic Region
15277 guanine nucleotide binding protein, alpha 13 Details for RP23-465A12.1 - guanine nucleotide binding protein, alpha 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14674 Tuberculist Genomic Region	18654 hexokinase 2 Details for - - hexokinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15277 Tuberculist Genomic Region
19696 placental growth factor Details for - - placental growth factor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18654 Tuberculist Genomic Region	214150 reticuloendotheliosis oncogene Details for - - reticuloendotheliosis oncogene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19696 Tuberculist Genomic Region
217151 argonaute RISC catalytic subunit 3 Details for RP23-113P22.6 - argonaute RISC catalytic subunit 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 214150 Tuberculist Genomic Region	218756 ADP-ribosylation factor-like 5C Details for RP23-309H19.3 - ADP-ribosylation factor-like 5C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217151 Tuberculist Genomic Region
240396 solute carrier family 4, sodium bicarbonate cotransporter, member 7 Details for - - solute carrier family 4, sodium bicarbonate cotransporter, member 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218756 Tuberculist Genomic Region	26570 mex3 homolog C (C. elegans) Details for - - mex3 homolog C (C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240396 Tuberculist Genomic Region
327987 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26570 Tuberculist Genomic Region	329562 mediator complex subunit 13 Details for RP23-50E4.3 - mediator complex subunit 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 327987 Tuberculist Genomic Region
380921 RIKEN cDNA A530013C23 gene Details for - - RIKEN cDNA A530013C23 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 329562 Tuberculist Genomic Region	387609 diacylglycerol kinase, eta Details for mCG_120030 - diacylglycerol kinase, eta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 380921 Tuberculist Genomic Region
54604 zinc fingers and homeoboxes 2 Details for - - zinc fingers and homeoboxes 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 387609 Tuberculist Genomic Region	57783 pecanex homolog (Drosophila) Details for - - pecanex homolog (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54604 Tuberculist Genomic Region
66597 TNFAIP3 interacting protein 1 Details for - - TNFAIP3 interacting protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 57783 Tuberculist Genomic Region	67246 tripartite motif-containing 13 Details for - - tripartite motif-containing 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66597 Tuberculist Genomic Region
67338 RIKEN cDNA 2810474O19 gene Details for RP23-214L4.1 - RIKEN cDNA 2810474O19 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67246 Tuberculist Genomic Region	67533 ring finger and FYVE like domain containing protein Details for RP23-316C11.8 - ring finger and FYVE like domain containing protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67338 Tuberculist Genomic Region
67579 PTPRF interacting protein, binding protein 1 (liprin beta 1) Details for - - PTPRF interacting protein, binding protein 1 (liprin beta 1) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67533 Tuberculist Genomic Region	69581 cytoplasmic polyadenylation element binding protein 4 Details for RP23-186D6.1 - cytoplasmic polyadenylation element binding protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67579 Tuberculist Genomic Region
723828 ras homolog gene family, member U Details for - - ras homolog gene family, member U GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69581 Tuberculist Genomic Region	74007 microRNA 222 Details for - - microRNA 222 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 723828 Tuberculist Genomic Region
74178 BTB (POZ) domain containing 11 Details for - - BTB (POZ) domain containing 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74007 Tuberculist Genomic Region	74198 serine/threonine kinase 40 Details for RP23-365D10.1 - serine/threonine kinase 40 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74178 Tuberculist Genomic Region
100504452 deltex 2 homolog (Drosophila) Details for - - deltex 2 homolog (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74198 Tuberculist Genomic Region	14630 predicted gene, 20235 Details for - - predicted gene, 20235 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100504452 Tuberculist Genomic Region
Details for - - glutamate-cysteine ligase, modifier subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14630 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_SP1_Q6_01_M00931, SP1_MA0079.2, V_SP1_03_M02281, V_SP4_03_M02810, V_MAZ_Q6_01_M02023, V_MUSCLE_INI_B_M00321, V_CKROX_Q2_M01175, V_SP4_Q5_M01273, Sp4.1, V_SP1_Q2_01_M00933, V_SP1_Q4_01_M00932	1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
12	AAAGCAAARNAA	NA	260	GGGGCGGGGCCG	Klf4_MA0039.2, SP1_MA0079.2, SP1_MA0079.1, V$GC_01_M00255, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$SP2_01_M01783, V$KLF7_03_M02773, V$SP4_Q5_M01273, V$SP1_Q2_01_M00933, V$SP1_01_M00008, V$SP1_02_M01303, V$SP4_03_M02810, V$KROX_Q6_M00982, V$SP1_03_M02281, V$E2F3_Q6_M02089, V$GKLF_02_M01588, V$UF1H3BETA_Q6_M01068, V$ZFP281_01_M01597, V$MAZR_01_M00491, V$SP4_04_M02914, V$SMAD4_04_M02898, V$ETF_Q6_M00695, V$CACD_01_M01113, V$EGR1_Q6_M01873, V$BCL6B_04_M02844, V$ZFP281_04_M02831, V$CKROX_Q2_M01175, V$EGR1_06_M02744, V$MAZ_Q6_01_M02023, V$ZFP410_04_M02936, V$SP1SP3_Q4_M01219, V$MAZ_Q6_M00649, Klf7.1, Sp4.1, Sp4.2, Smad3.1, Bcl6b.2, Egr1.1, Zfp281.2, Zfp410.1, Zfp740.1, Ascl2.2, Zif268.1, SP4_C2H2_full_monomeric_17_1, SP1_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, KLF16_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, SP3_C2H2_DBD_monomeric_11_1, Klf12_C2H2_DBD_monomeric_15_1, SP8_C2H2_DBD_monomeric_12_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.31	GTCCGC	NA	1.45	CGGNCCGC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.52	CGAATG	NA	NA	0.85	ATTTTNNA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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