PITA_171 megaCluster: 2 Residual: 0.82

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_171 2 0.82 6 0.902 0.480798 1

Members

Displaying 1 - 44 of 44
108099 protein kinase, AMP-activated, gamma 2 non-catalytic subunit

Details for - - protein kinase, AMP-activated, gamma 2 non-catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108099

Tuberculist Genomic Region

140580 engulfment and cell motility 1

Details for - - engulfment and cell motility 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140580

Tuberculist Genomic Region

380840 LYR motif containing 4

Details for - - LYR motif containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380840

Tuberculist Genomic Region

66928 transmembrane protein 261

Details for RP24-200F10.1 - transmembrane protein 261

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66928

Tuberculist Genomic Region

68240 replication protein A3

Details for - - replication protein A3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68240

Tuberculist Genomic Region

100038522 DNA methyltransferase 3A, opposite strand

Details for - - DNA methyltransferase 3A, opposite strand

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100038522

Tuberculist Genomic Region

109169 IgA inducing protein

Details for - - IgA inducing protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109169

Tuberculist Genomic Region

110052 DEK oncogene (DNA binding)

Details for - - DEK oncogene (DNA binding)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110052

Tuberculist Genomic Region

110279 breakpoint cluster region

Details for - - breakpoint cluster region

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110279

Tuberculist Genomic Region

13618 endothelin receptor type B

Details for - - endothelin receptor type B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13618

Tuberculist Genomic Region

14137 farnesyl diphosphate farnesyl transferase 1

Details for - - farnesyl diphosphate farnesyl transferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14137

Tuberculist Genomic Region

14457 growth arrest specific 7

Details for RP23-338M9.2 - growth arrest specific 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14457

Tuberculist Genomic Region

14609 gap junction protein, alpha 1

Details for - - gap junction protein, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14609

Tuberculist Genomic Region

15953 interferon gamma inducible protein 47

Details for RP23-54N20.3 - interferon gamma inducible protein 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15953

Tuberculist Genomic Region

16411 integrin alpha X

Details for - - integrin alpha X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16411

Tuberculist Genomic Region

16835 low density lipoprotein receptor

Details for - - low density lipoprotein receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16835

Tuberculist Genomic Region

171170 muscleblind-like 3 (Drosophila)

Details for RP23-98P13.1 - muscleblind-like 3 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 171170

Tuberculist Genomic Region

17155 mannosidase 1, alpha

Details for - - mannosidase 1, alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17155

Tuberculist Genomic Region

18128 notch 1

Details for RP23-306D20.12-001 - notch 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18128

Tuberculist Genomic Region

18779 phospholipase A2 receptor 1

Details for - - phospholipase A2 receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18779

Tuberculist Genomic Region

19650 retinoblastoma-like 1 (p107)

Details for - - retinoblastoma-like 1 (p107)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19650

Tuberculist Genomic Region

20305 chemokine (C-C motif) ligand 6

Details for RP23-320E6.4 - chemokine (C-C motif) ligand 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20305

Tuberculist Genomic Region

21844 T cell lymphoma invasion and metastasis 1

Details for - - T cell lymphoma invasion and metastasis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21844

Tuberculist Genomic Region

21949 tumor necrosis factor (ligand) superfamily, member 8

Details for - - tumor necrosis factor (ligand) superfamily, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21949

Tuberculist Genomic Region

22033 TNF receptor-associated factor 5

Details for - - TNF receptor-associated factor 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22033

Tuberculist Genomic Region

233552 glycerophosphodiester phosphodiesterase domain containing 5

Details for - - glycerophosphodiester phosphodiesterase domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233552

Tuberculist Genomic Region

235505 CD109 antigen

Details for - - CD109 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235505

Tuberculist Genomic Region

246746 CD300 antigen like family member F

Details for RP23-342L24.3 - CD300 antigen like family member F

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246746

Tuberculist Genomic Region

26382 FYVE, RhoGEF and PH domain containing 2

Details for - - FYVE, RhoGEF and PH domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26382

Tuberculist Genomic Region

27053 asparagine synthetase

Details for - - asparagine synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27053

Tuberculist Genomic Region

353346 G protein-coupled receptor 141

Details for - - G protein-coupled receptor 141

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 353346

Tuberculist Genomic Region

66821 BCS1-like (yeast)

Details for - - BCS1-like (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66821

Tuberculist Genomic Region

67046 TBC1 domain family, member 7

Details for - - TBC1 domain family, member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67046

Tuberculist Genomic Region

67448 plexin domain containing 2

Details for RP23-281I20.1 - plexin domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67448

Tuberculist Genomic Region

68612 ubiquitin-conjugating enzyme E2C

Details for RP23-370H21.6 - ubiquitin-conjugating enzyme E2C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68612

Tuberculist Genomic Region

69941 RIKEN cDNA 2810408I11 gene

Details for - - RIKEN cDNA 2810408I11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69941

Tuberculist Genomic Region

70984 RIKEN cDNA 4931406C07 gene

Details for - - RIKEN cDNA 4931406C07 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70984

Tuberculist Genomic Region

71720 oxysterol binding protein-like 3

Details for - - oxysterol binding protein-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71720

Tuberculist Genomic Region

71946 endonuclease domain containing 1

Details for - - endonuclease domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71946

Tuberculist Genomic Region

78829 TSC22 domain family, member 4

Details for - - TSC22 domain family, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78829

Tuberculist Genomic Region

81913 BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)

Details for - - BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 81913

Tuberculist Genomic Region

83701 serrate RNA effector molecule homolog (Arabidopsis)

Details for - - serrate RNA effector molecule homolog (Arabidopsis)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83701

Tuberculist Genomic Region

94212 phosphoprotein associated with glycosphingolipid microdomains 1

Details for - - phosphoprotein associated with glycosphingolipid microdomains 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94212

Tuberculist Genomic Region

97165 high mobility group box 2

Details for - - high mobility group box 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 97165

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF1_Q6_01_M01881 0.414634 0.000000188

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.26 AWAAAMARAAA NA 54 CAGGCTCCTCC NA

Upstream Weeder Motif

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.58 GTACCAGT NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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