PITA_173 megaCluster: 11 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_173 11 0.17 12 0 0.804399 0.001

Members

Displaying 1 - 38 of 38
104776 aldehyde dehydrogenase family 6, subfamily A1

Details for - - aldehyde dehydrogenase family 6, subfamily A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104776

Tuberculist Genomic Region

100042480 NHS-like 2

Details for RP23-448C18.1 - NHS-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100042480

Tuberculist Genomic Region

109242 kinesin family member 24

Details for RP23-328E6.6 - kinesin family member 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109242

Tuberculist Genomic Region

12144 Bloom syndrome, RecQ helicase-like

Details for - - Bloom syndrome, RecQ helicase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12144

Tuberculist Genomic Region

14590 gamma-glutamyl hydrolase

Details for RP23-259B18.3 - gamma-glutamyl hydrolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14590

Tuberculist Genomic Region

15510 heat shock protein 1 (chaperonin)

Details for - - heat shock protein 1 (chaperonin)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15510

Tuberculist Genomic Region

16553 kinesin family member 13A

Details for - - kinesin family member 13A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16553

Tuberculist Genomic Region

16774 laminin, alpha 3

Details for - - laminin, alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16774

Tuberculist Genomic Region

17865 myeloblastosis oncogene-like 2

Details for RP23-335N12.7 - myeloblastosis oncogene-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17865

Tuberculist Genomic Region

18441 purinergic receptor P2Y, G-protein coupled 1

Details for - - purinergic receptor P2Y, G-protein coupled 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18441

Tuberculist Genomic Region

19387 RAN GTPase activating protein 1

Details for - - RAN GTPase activating protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19387

Tuberculist Genomic Region

20018 polymerase (RNA) I polypeptide D

Details for AL513345.2 - polymerase (RNA) I polypeptide D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20018

Tuberculist Genomic Region

20479 vacuolar protein sorting 4b (yeast)

Details for - - vacuolar protein sorting 4b (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20479

Tuberculist Genomic Region

21780 transcription factor A, mitochondrial

Details for - - transcription factor A, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21780

Tuberculist Genomic Region

21933 tumor necrosis factor receptor superfamily, member 10b

Details for - - tumor necrosis factor receptor superfamily, member 10b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21933

Tuberculist Genomic Region

225115 supervillin

Details for - - supervillin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225115

Tuberculist Genomic Region

228026 pyruvate dehydrogenase kinase, isoenzyme 1

Details for RP23-5K9.5 - pyruvate dehydrogenase kinase, isoenzyme 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228026

Tuberculist Genomic Region

228482 Rho GTPase activating protein 11A

Details for RP23-288M21.5 - Rho GTPase activating protein 11A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228482

Tuberculist Genomic Region

231329 polymerase (RNA) II (DNA directed) polypeptide B

Details for - - polymerase (RNA) II (DNA directed) polypeptide B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231329

Tuberculist Genomic Region

270906 proline rich 11

Details for RP23-352L3.4 - proline rich 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 270906

Tuberculist Genomic Region

50911 exosome component 9

Details for - - exosome component 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50911

Tuberculist Genomic Region

52679 E2F transcription factor 7

Details for - - E2F transcription factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52679

Tuberculist Genomic Region

56442 serine incorporator 1

Details for - - serine incorporator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56442

Tuberculist Genomic Region

58521 EP300 interacting inhibitor of differentiation 1

Details for RP23-323D9.2 - EP300 interacting inhibitor of differentiation 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58521

Tuberculist Genomic Region

67241 structural maintenance of chromosomes 6

Details for - - structural maintenance of chromosomes 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67241

Tuberculist Genomic Region

67755 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47

Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67755

Tuberculist Genomic Region

68598 DnaJ (Hsp40) homolog, subfamily C, member 8

Details for RP23-63D8.7 - DnaJ (Hsp40) homolog, subfamily C, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68598

Tuberculist Genomic Region

68879 PRP6 pre-mRNA splicing factor 6 homolog (yeast)

Details for RP23-138J20.4 - PRP6 pre-mRNA splicing factor 6 homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68879

Tuberculist Genomic Region

69399 RIKEN cDNA 1700025G04 gene

Details for - - RIKEN cDNA 1700025G04 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69399

Tuberculist Genomic Region

72479 hydroxysteroid dehydrogenase like 2

Details for RP23-6E12.1 - hydroxysteroid dehydrogenase like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72479

Tuberculist Genomic Region

74108 poly(A)-specific ribonuclease (deadenylation nuclease)

Details for - - poly(A)-specific ribonuclease (deadenylation nuclease)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74108

Tuberculist Genomic Region

77252 RIKEN cDNA 9430038I01 gene

Details for - - RIKEN cDNA 9430038I01 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77252

Tuberculist Genomic Region

78523 mitochondrial ribosomal protein L9

Details for - - mitochondrial ribosomal protein L9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78523

Tuberculist Genomic Region

83493 SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)

Details for - - SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83493

Tuberculist Genomic Region

12649 checkpoint kinase 1

Details for - - checkpoint kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12649

Tuberculist Genomic Region

20460 Scl/Tal1 interrupting locus

Details for RP23-295C20.5 - Scl/Tal1 interrupting locus

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20460

Tuberculist Genomic Region

13605 ect2 oncogene

Details for - - ect2 oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13605

Tuberculist Genomic Region

13682 eukaryotic translation initiation factor 4A2

Details for - - eukaryotic translation initiation factor 4A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13682

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Sp4.2 0.578947 0.0000208

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000000037 AAARAAAANAAA NA 310 AAAACMAAWTCT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.25 CGTCGG NA 1.42 CGCGNCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.47 GCNATA NA NA 0.58 GCTACANN NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-212, mmu-miR-132 0.741935 0.00000963

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-320 0.485714 0.0000156

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