PITA_187 megaCluster: 8 Residual: 0.12 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_187	8	0.12	15	0	0.973449	0

Members

Displaying 1 - 19 of 19

11907 arginyltransferase 1 Details for - - arginyltransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11907 Tuberculist Genomic Region	230661 testis-specific kinase 2 Details for RP23-109A3.2 - testis-specific kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230661 Tuberculist Genomic Region
13666 eukaryotic translation initiation factor 2 alpha kinase 3 Details for - - eukaryotic translation initiation factor 2 alpha kinase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13666 Tuberculist Genomic Region	14245 lipin 1 Details for - - lipin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14245 Tuberculist Genomic Region
20822 TROVE domain family, member 2 Details for AL592403.2 - TROVE domain family, member 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20822 Tuberculist Genomic Region	212514 spindle and centriole associated protein 1 Details for - - spindle and centriole associated protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 212514 Tuberculist Genomic Region
22401 zinc finger matrin type 3 Details for - - zinc finger matrin type 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22401 Tuberculist Genomic Region	234865 nucleoporin 133 Details for - - nucleoporin 133 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 234865 Tuberculist Genomic Region
26385 G protein-coupled receptor kinase 6 Details for - - G protein-coupled receptor kinase 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26385 Tuberculist Genomic Region	272396 threonyl-tRNA synthetase-like 2 Details for - - threonyl-tRNA synthetase-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 272396 Tuberculist Genomic Region
30951 chromobox 8 Details for RP23-458A23.1 - chromobox 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 30951 Tuberculist Genomic Region	65098 zinc finger, AN1-type domain 6 Details for - - zinc finger, AN1-type domain 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 65098 Tuberculist Genomic Region
66455 canopy 4 homolog (zebrafish) Details for - - canopy 4 homolog (zebrafish) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66455 Tuberculist Genomic Region	66841 electron transferring flavoprotein, dehydrogenase Details for - - electron transferring flavoprotein, dehydrogenase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66841 Tuberculist Genomic Region
68183 breast carcinoma amplified sequence 2 Details for - - breast carcinoma amplified sequence 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68183 Tuberculist Genomic Region	68259 intraflagellar transport 80 Details for - - intraflagellar transport 80 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68259 Tuberculist Genomic Region
70652 transmembrane protein 144 Details for - - transmembrane protein 144 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70652 Tuberculist Genomic Region	73668 tetratricopeptide repeat domain 21B Details for RP23-353H5.2 - tetratricopeptide repeat domain 21B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73668 Tuberculist Genomic Region
75786 cytoskeleton associated protein 5 Details for RP23-176N9.2 - cytoskeleton associated protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75786 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
E2F3_E2F_DBD_dimeric_18_2	0.157895	0.0000695

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
1.1	GCCCCGCCCCCN	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP1_Q6_M00196, V$GC_01_M00255, V$SP1_Q4_01_M00932, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$SP1_Q2_01_M00933, V$SP1_03_M02281, V$KLF7_03_M02773, V$ZFP281_01_M01597, V$GKLF_02_M01588, V$SP1_02_M01303, V$SP2_01_M01783, V$MAZR_01_M00491, V$SP4_03_M02810, V$UF1H3BETA_Q6_M01068, V$SMAD4_04_M02898, V$SP1_01_M00008, V$SP1SP3_Q4_M01219, V$ZFP281_04_M02831, V$BCL6B_04_M02844, V$E2F3_Q6_M02089, V$MAZ_Q6_01_M02023, V$ZFP410_04_M02936, V$ZBP89_Q4_M01816, V$ETF_Q6_M00695, V$EGR1_Q6_M01873, V$CKROX_Q2_M01175, V$ZNF219_01_M01122, V$KROX_Q6_M00982, V$MAZ_Q6_M00649, V$KLF15_Q2_M01714, V$EGR1_06_M02744, V$SP4_04_M02914, V$CACD_01_M01113, V$ZFP740_03_M02834, Klf7.1, Sp4.1, Smad3.1, Zfp281.2, Bcl6b.2, Zfp410.1, Egr1.1, Zfp740.1, Sp4.2, SP4_C2H2_full_monomeric_17_1, SP1_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, KLF16_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, SP3_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, Klf12_C2H2_DBD_monomeric_15_1	230	TNTKTTCTAATT	Prrx2_MA0075.1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.47	TCGGCG	NA	1.85	TCGGCGCC	V$E2F2_04_M02846, V$E2F4_04_M02847, E2F2.2, E2F3.2

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.77	CGCGAT	NA	NA	0.91	GGCTTCTA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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