PITA_192 megaCluster: 1 Residual: 0.21 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_192	1	0.21	15	0	0.912743	0

Members

Displaying 1 - 28 of 28

69660 transmembrane BAX inhibitor motif containing 1 Details for - - transmembrane BAX inhibitor motif containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69660 Tuberculist Genomic Region	75646 retinoic acid induced 14 Details for - - retinoic acid induced 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75646 Tuberculist Genomic Region
105203 cDNA sequence BC016423 Details for - - cDNA sequence BC016423 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105203 Tuberculist Genomic Region	12457 CCR4 carbon catabolite repression 4-like (S. cerevisiae) Details for - - CCR4 carbon catabolite repression 4-like (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12457 Tuberculist Genomic Region
12702 suppressor of cytokine signaling 3 Details for RP23-268N22.6 - suppressor of cytokine signaling 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12702 Tuberculist Genomic Region	12703 suppressor of cytokine signaling 1 Details for - - suppressor of cytokine signaling 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12703 Tuberculist Genomic Region
14766 G protein-coupled receptor 56 Details for - - G protein-coupled receptor 56 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14766 Tuberculist Genomic Region	15273 human immunodeficiency virus type I enhancer binding protein 2 Details for - - human immunodeficiency virus type I enhancer binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15273 Tuberculist Genomic Region
16491 potassium voltage-gated channel, shaker-related subfamily, member 3 Details for - - potassium voltage-gated channel, shaker-related subfamily, member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16491 Tuberculist Genomic Region	16656 human immunodeficiency virus type I enhancer binding protein 3 Details for RP23-98J9.1 - human immunodeficiency virus type I enhancer binding protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16656 Tuberculist Genomic Region
17909 myosin X Details for - - myosin X GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17909 Tuberculist Genomic Region	192656 receptor (TNFRSF)-interacting serine-threonine kinase 2 Details for RP23-378L22.1 - receptor (TNFRSF)-interacting serine-threonine kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 192656 Tuberculist Genomic Region
19730 ral guanine nucleotide dissociation stimulator Details for RP23-430H1.6 - ral guanine nucleotide dissociation stimulator GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19730 Tuberculist Genomic Region	20698 sphingosine kinase 1 Details for RP23-193A16.4 - sphingosine kinase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20698 Tuberculist Genomic Region
208266 DOT1-like, histone H3 methyltransferase (S. cerevisiae) Details for - - DOT1-like, histone H3 methyltransferase (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 208266 Tuberculist Genomic Region	216850 KDM1 lysine (K)-specific demethylase 6B Details for RP23-5O23.5 - KDM1 lysine (K)-specific demethylase 6B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216850 Tuberculist Genomic Region
217069 tripartite motif-containing 25 Details for RP23-176J13.7 - tripartite motif-containing 25 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217069 Tuberculist Genomic Region	230738 zinc finger CCCH type containing 12A Details for RP23-325M14.9 - zinc finger CCCH type containing 12A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230738 Tuberculist Genomic Region
23921 SH2B adaptor protein 2 Details for - - SH2B adaptor protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23921 Tuberculist Genomic Region	24088 toll-like receptor 2 Details for - - toll-like receptor 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 24088 Tuberculist Genomic Region
27279 tumor necrosis factor receptor superfamily, member 12a Details for - - tumor necrosis factor receptor superfamily, member 12a GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27279 Tuberculist Genomic Region	320790 chromodomain helicase DNA binding protein 7 Details for RP23-464N23.1 - chromodomain helicase DNA binding protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320790 Tuberculist Genomic Region
54720 regulator of calcineurin 1 Details for - - regulator of calcineurin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54720 Tuberculist Genomic Region	58250 carbohydrate sulfotransferase 11 Details for - - carbohydrate sulfotransferase 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 58250 Tuberculist Genomic Region
67876 coenzyme Q10 homolog B (S. cerevisiae) Details for - - coenzyme Q10 homolog B (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67876 Tuberculist Genomic Region	68166 spire homolog 1 (Drosophila) Details for - - spire homolog 1 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68166 Tuberculist Genomic Region
71409 formin-like 2 Details for RP23-282A22.1 - formin-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71409 Tuberculist Genomic Region	78103 RIKEN cDNA 8430431K14 gene Details for - - RIKEN cDNA 8430431K14 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78103 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_GKLF_02_M01588	1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
140	GGKGGCGGCGGC	SP1_MA0079.2, V$SP1SP3_Q4_M01219, V$SP1_Q6_M00196, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$SP1_Q2_01_M00933, V$SP1_02_M01303, V$SP1_Q6_01_M00931, V$SP1_03_M02281, V$ETF_Q6_M00695, V$EGR1_Q6_M01873, V$SP4_03_M02810, V$KROX_Q6_M00982, V$ZFP281_04_M02831, V$GC_01_M00255, V$ZNF219_01_M01122, V$RNF96_01_M01199, V$EGR1_06_M02744, V$ZFP281_01_M01597, V$ZBP89_Q4_M01816, V$EGR_Q6_M00807, Sp4.1, Zfp281.2, Egr1.1, Smad3.1, Bcl6b.2, Klf7.1, Zif268.1, Zfp740.1, Zfp410.1	2000	TTGTTTTGTTT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.36	CGGTCG	NA	1.5	CGCGNCGC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.93	CCNTCCCN	mmu-mir-92b-5p	7mer_a1		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-124	0.52	0.0000183

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