PITA_202 megaCluster: 2 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_202 2 0.26 15 0 0.877167 0

Members

Displaying 1 - 24 of 24
19271 protein tyrosine phosphatase, receptor type, J

Details for RP24-113P16.2 - protein tyrosine phosphatase, receptor type, J

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19271

Tuberculist Genomic Region

380916 leucine-rich repeats and calponin homology (CH) domain containing 1

Details for - - leucine-rich repeats and calponin homology (CH) domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380916

Tuberculist Genomic Region

76089 Rap guanine nucleotide exchange factor (GEF) 2

Details for - - Rap guanine nucleotide exchange factor (GEF) 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76089

Tuberculist Genomic Region

12494 CD38 antigen

Details for - - CD38 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12494

Tuberculist Genomic Region

13805 endoglin

Details for RP23-17P12.4 - endoglin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13805

Tuberculist Genomic Region

140559 immunoglobulin superfamily, member 8

Details for - - immunoglobulin superfamily, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140559

Tuberculist Genomic Region

16542 kinase insert domain protein receptor

Details for - - kinase insert domain protein receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16542

Tuberculist Genomic Region

170768 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

Details for RP23-428M4.3 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170768

Tuberculist Genomic Region

17130 SMAD family member 6

Details for - - SMAD family member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17130

Tuberculist Genomic Region

17937 Ngfi-A binding protein 2

Details for - - Ngfi-A binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17937

Tuberculist Genomic Region

17948 NLR family, apoptosis inhibitory protein 2

Details for RP23-333E24.2 - NLR family, apoptosis inhibitory protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17948

Tuberculist Genomic Region

18032 nuclear factor I/X

Details for - - nuclear factor I/X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18032

Tuberculist Genomic Region

19108 protein kinase, X-linked

Details for RP23-91C19.5 - protein kinase, X-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19108

Tuberculist Genomic Region

230088 family with sequence similarity 214, member B

Details for RP23-124L1.9 - family with sequence similarity 214, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230088

Tuberculist Genomic Region

30925 SLAM family member 6

Details for - - SLAM family member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30925

Tuberculist Genomic Region

381668 fibrosin-like 1

Details for - - fibrosin-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381668

Tuberculist Genomic Region

545384 cDNA sequence BC094916

Details for - - cDNA sequence BC094916

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 545384

Tuberculist Genomic Region

67916 phosphatidic acid phosphatase type 2B

Details for RP23-104G20.1 - phosphatidic acid phosphatase type 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67916

Tuberculist Genomic Region

70661 SIK family kinase 3

Details for - - SIK family kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70661

Tuberculist Genomic Region

70675 valosin containing protein (p97)/p47 complex interacting protein 1

Details for - - valosin containing protein (p97)/p47 complex interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70675

Tuberculist Genomic Region

71782 ankyrin repeat and LEM domain containing 2

Details for - - ankyrin repeat and LEM domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71782

Tuberculist Genomic Region

81702 ankyrin repeat domain 17

Details for - - ankyrin repeat domain 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 81702

Tuberculist Genomic Region

20656 superoxide dismutase 2, mitochondrial

Details for - - superoxide dismutase 2, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20656

Tuberculist Genomic Region

20393 serum/glucocorticoid regulated kinase 1

Details for - - serum/glucocorticoid regulated kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20393

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_TFIII_Q6_M00706 0.875 0.00000259

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
61000 AANANAGATGAA NA 1500 AGRAGACAAAS NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.21 CGGACG MIZF_MA0131.1 1.15 CGGACGCC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.69 CCGGCG NA NA 0.85 GCGTAGCG NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-324-5p 0.65 0.0000558

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-1965 0.238095 0.000051

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