PITA_214 megaCluster: 8 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_214 8 0.21 15 0 0.92752 0

Members

Displaying 1 - 33 of 33
14873 glutathione S-transferase omega 1

Details for - - glutathione S-transferase omega 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14873

Tuberculist Genomic Region

54138 ataxin 10

Details for - - ataxin 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54138

Tuberculist Genomic Region

65972 interferon gamma inducible protein 30

Details for - - interferon gamma inducible protein 30

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65972

Tuberculist Genomic Region

76582 importin 11

Details for - - importin 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76582

Tuberculist Genomic Region

104348 zinc finger protein 120

Details for RP23-11F9.2 - zinc finger protein 120

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104348

Tuberculist Genomic Region

107047 proteasome (prosome, macropain) assembly chaperone 2

Details for - - proteasome (prosome, macropain) assembly chaperone 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107047

Tuberculist Genomic Region

108853 mitochondrial translational release factor 1-like

Details for - - mitochondrial translational release factor 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108853

Tuberculist Genomic Region

12068 blocked early in transport 1 homolog (S. cerevisiae)

Details for - - blocked early in transport 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12068

Tuberculist Genomic Region

12626 centrin 3

Details for - - centrin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12626

Tuberculist Genomic Region

12663 choroideremia-like

Details for - - choroideremia-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12663

Tuberculist Genomic Region

13177 enoyl-Coenzyme A delta isomerase 1

Details for - - enoyl-Coenzyme A delta isomerase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13177

Tuberculist Genomic Region

13595 phenylalkylamine Ca2+ antagonist (emopamil) binding protein

Details for RP23-27I6.10-001 - phenylalkylamine Ca2+ antagonist (emopamil) binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13595

Tuberculist Genomic Region

15115 histidyl-tRNA synthetase

Details for - - histidyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15115

Tuberculist Genomic Region

19212 phosphotriesterase related

Details for RP23-415C3.1 - phosphotriesterase related

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19212

Tuberculist Genomic Region

21824 thrombomodulin

Details for RP23-70N3.2 - thrombomodulin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21824

Tuberculist Genomic Region

227095 3-hydroxyisobutyryl-Coenzyme A hydrolase

Details for - - 3-hydroxyisobutyryl-Coenzyme A hydrolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227095

Tuberculist Genomic Region

237336 TATA box binding protein-like 1

Details for - - TATA box binding protein-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237336

Tuberculist Genomic Region

24060 solute carrier family 35 (CMP-sialic acid transporter), member 1

Details for RP23-76M15.2 - solute carrier family 35 (CMP-sialic acid transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24060

Tuberculist Genomic Region

245828 trafficking protein particle complex 1

Details for RP23-26L6.10-004 - trafficking protein particle complex 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245828

Tuberculist Genomic Region

50773 5',3'-nucleotidase, cytosolic

Details for RP23-392H19.7 - 5',3'-nucleotidase, cytosolic

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50773

Tuberculist Genomic Region

53893 nudix (nucleoside diphosphate linked moiety X)-type motif 5

Details for RP23-307E15.2 - nudix (nucleoside diphosphate linked moiety X)-type motif 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53893

Tuberculist Genomic Region

66671 cyclin H

Details for - - cyclin H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66671

Tuberculist Genomic Region

67005 polymerase (RNA) III (DNA directed) polypeptide K

Details for RP23-322G1.6 - polymerase (RNA) III (DNA directed) polypeptide K

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67005

Tuberculist Genomic Region

68559 p53 and DNA damage regulated 1

Details for RP23-88J10.1 - p53 and DNA damage regulated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68559

Tuberculist Genomic Region

68611 mitochondrial ribosomal protein L28

Details for - - mitochondrial ribosomal protein L28

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68611

Tuberculist Genomic Region

70544 transmembrane protein 242

Details for - - transmembrane protein 242

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70544

Tuberculist Genomic Region

70681 family with sequence similarity 175, member A

Details for - - family with sequence similarity 175, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70681

Tuberculist Genomic Region

70823 HMG box domain containing 4

Details for AL603864.1 - HMG box domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70823

Tuberculist Genomic Region

77032 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3

Details for - - thiosulfate sulfurtransferase (rhodanese)-like domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77032

Tuberculist Genomic Region

77862 thymocyte nuclear protein 1

Details for - - thymocyte nuclear protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77862

Tuberculist Genomic Region

78586 S1 RNA binding domain 1

Details for - - S1 RNA binding domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78586

Tuberculist Genomic Region

22247 uridine monophosphate synthetase

Details for - - uridine monophosphate synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22247

Tuberculist Genomic Region

72050 KDEL (Lys-Asp-Glu-Leu) containing 1

Details for - - KDEL (Lys-Asp-Glu-Leu) containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72050

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Elk3_ETS_DBD_monomeric_10_1 0.333333 0.0000578

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000000088 TTNTTTTYTNTT NA 0.12 AMWRAACAAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.19 CGCGGTCT NA NA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.57 TAATAGTC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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