PITA_219 megaCluster: 5 Residual: 0.23 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_219	5	0.23	15	0	0.908621	0

Members

Displaying 1 - 38 of 38

100494 zinc finger, AN1-type domain 2A Details for - - zinc finger, AN1-type domain 2A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100494 Tuberculist Genomic Region	102122 family with sequence similarity 192, member A Details for - - family with sequence similarity 192, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 102122 Tuberculist Genomic Region
103742 migration and invasion enhancer 1 Details for RP23-355L10.9 - migration and invasion enhancer 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 103742 Tuberculist Genomic Region	106025 SHANK-associated RH domain interacting protein Details for - - SHANK-associated RH domain interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106025 Tuberculist Genomic Region
106338 NOL1/NOP2/Sun domain family member 3 Details for - - NOL1/NOP2/Sun domain family member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106338 Tuberculist Genomic Region	110558 histocompatibility 2, Q region locus 9 Details for - - histocompatibility 2, Q region locus 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110558 Tuberculist Genomic Region
12843 collagen, type I, alpha 2 Details for - - collagen, type I, alpha 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12843 Tuberculist Genomic Region	13179 decorin Details for - - decorin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13179 Tuberculist Genomic Region
16658 v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) Details for RP23-333A18.1 - v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16658 Tuberculist Genomic Region	19018 SCAN domain-containing 1 Details for - - SCAN domain-containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19018 Tuberculist Genomic Region
19158 cytohesin 2 Details for - - cytohesin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19158 Tuberculist Genomic Region	210044 adenylate cyclase 2 Details for - - adenylate cyclase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 210044 Tuberculist Genomic Region
215160 rhomboid domain containing 2 Details for - - rhomboid domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 215160 Tuberculist Genomic Region	21826 thrombospondin 2 Details for - - thrombospondin 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21826 Tuberculist Genomic Region
22318 vesicle-associated membrane protein 2 Details for RP23-26L6.8 - vesicle-associated membrane protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22318 Tuberculist Genomic Region	225010 lysocardiolipin acyltransferase 1 Details for RP23-294D3.1 - lysocardiolipin acyltransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 225010 Tuberculist Genomic Region
227700 SH3-domain GRB2-like endophilin B2 Details for RP23-395P6.5 - SH3-domain GRB2-like endophilin B2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227700 Tuberculist Genomic Region	233065 alkB, alkylation repair homolog 6 (E. coli) Details for - - alkB, alkylation repair homolog 6 (E. coli) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 233065 Tuberculist Genomic Region
233900 ring finger protein 40 Details for - - ring finger protein 40 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 233900 Tuberculist Genomic Region	243371 leucine rich repeat containing 61 Details for - - leucine rich repeat containing 61 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 243371 Tuberculist Genomic Region
27226 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) Details for - - phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27226 Tuberculist Genomic Region	320634 oculocerebrorenal syndrome of Lowe Details for RP23-455F14.2 - oculocerebrorenal syndrome of Lowe GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320634 Tuberculist Genomic Region
378462 MORN repeat containing 2 Details for - - MORN repeat containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 378462 Tuberculist Genomic Region	50706 periostin, osteoblast specific factor Details for - - periostin, osteoblast specific factor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 50706 Tuberculist Genomic Region
55988 sorting nexin 12 Details for RP23-356J7.1 - sorting nexin 12 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 55988 Tuberculist Genomic Region	57319 sphingomyelin phosphodiesterase, acid-like 3A Details for - - sphingomyelin phosphodiesterase, acid-like 3A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 57319 Tuberculist Genomic Region
66218 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 Details for - - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66218 Tuberculist Genomic Region	66278 small integral membrane protein 20 Details for - - small integral membrane protein 20 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66278 Tuberculist Genomic Region
66610 ABI gene family, member 3 Details for RP23-151M22.4 - ABI gene family, member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66610 Tuberculist Genomic Region	70240 UFM1-specific peptidase 1 Details for - - UFM1-specific peptidase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70240 Tuberculist Genomic Region
71772 phospholipase B domain containing 2 Details for - - phospholipase B domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71772 Tuberculist Genomic Region	72324 plexin domain containing 1 Details for RP23-309H19.1 - plexin domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72324 Tuberculist Genomic Region
74211 RIKEN cDNA 1700017B05 gene Details for - - RIKEN cDNA 1700017B05 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74211 Tuberculist Genomic Region	74257 tetraspanin 17 Details for - - tetraspanin 17 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74257 Tuberculist Genomic Region
76633 RIKEN cDNA 1700112E06 gene Details for - - RIKEN cDNA 1700112E06 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76633 Tuberculist Genomic Region	78611 BTB (POZ) domain containing 19 Details for RP23-59L24.3 - BTB (POZ) domain containing 19 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78611 Tuberculist Genomic Region
80517 HERPUD family member 2 Details for MNCb-2040 - HERPUD family member 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80517 Tuberculist Genomic Region	99543 olfactomedin-like 3 Details for DN-252N9.4 - olfactomedin-like 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 99543 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
TBX4_TBX_DBD_dimeric_20_1	0.243243	0.0000415

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.000000000058	AAAAMAAANAAA	NA	0.0033	CYCCRCCCCCM	SP1_MA0079.2, Klf4_MA0039.2, V$ZFP281_01_M01597, V$SP1_03_M02281, V$ZBP89_Q4_M01816, V$SP1_Q2_01_M00933, V$SP1_Q6_M00196, V$SP1_02_M01303, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP4_Q5_M01273, V$UF1H3BETA_Q6_M01068, V$ZFP740_03_M02834, V$ZFP281_04_M02831, V$SP1_Q6_01_M00931, V$BCL6B_04_M02844, V$GKLF_02_M01588, V$KLF15_Q2_M01714, V$KLF7_03_M02773, V$FKLF_Q5_M01837, V$CACD_01_M01113, V$MAZ_Q6_01_M02023, V$CKROX_Q2_M01175, V$CACBINDINGPROTEIN_Q6_M00720, V$SP1SP3_Q4_M01219, V$SP4_03_M02810, V$MAZR_01_M00491, V$ZNF219_01_M01122, V$EGR1_06_M02744, V$ZFP410_04_M02936, V$EGR1_Q6_M01873, V$KROX_Q6_M00982, V$ETF_Q6_M00695, V$EKLF_Q5_M01874, V$MAZ_Q6_M00649, V$BTEB3_Q5_M01865, V$WT1_Q6_01_M02036, V$SP1_01_M00008, Zfp281.2, Zfp740.1, Bcl6b.2, Klf7.1, Sp4.1, Egr1.1, Zfp410.1, Glis2.1, Smad3.1, Sox13.2, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, ZNF740_C2H2_full_monomeric_10_1, SP8_C2H2_DBD_monomeric_12_1, SP4_C2H2_full_monomeric_17_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.14	GCGGGT	V$GCM1_03_M02758, Gcm1.1, Smad3.1, GCM2_GCM_DBD_monomeric_10_1, GCM1_GCM_DBD_monomeric_10_1, GCM1_GCM_full_monomeric_11_1	1.16	TGCGGGTC	Gcm1.1, GCM2_GCM_DBD_monomeric_10_1

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.73	CGCGAA	NA	NA	0.7	ATCCNGGG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments