PITA_225 megaCluster: 9 Residual: 0.82

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_225 9 0.82 6 0.911 0.548195 1

Members

Displaying 1 - 34 of 34
100019 midasin homolog (yeast)

Details for - - midasin homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100019

Tuberculist Genomic Region

100042807 eukaryotic translation initiation factor 3, subunit J2

Details for - - eukaryotic translation initiation factor 3, subunit J2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100042807

Tuberculist Genomic Region

100313519 small nucleolar RNA, C/D box 17

Details for - - small nucleolar RNA, C/D box 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100313519

Tuberculist Genomic Region

100503664 predicted gene 13012

Details for - - predicted gene 13012

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503664

Tuberculist Genomic Region

107527 predicted gene, 16685

Details for - - predicted gene, 16685

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504139

Tuberculist Genomic Region

109115 interleukin 1 receptor-like 2

Details for - - interleukin 1 receptor-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107527

Tuberculist Genomic Region

13555 suppressor of Ty 3

Details for AC164546.1 - suppressor of Ty 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109115

Tuberculist Genomic Region

140795 E2F transcription factor 1

Details for RP23-109C16.5 - E2F transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13555

Tuberculist Genomic Region

16890 purinergic receptor P2Y, G-protein coupled, 14

Details for - - purinergic receptor P2Y, G-protein coupled, 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140795

Tuberculist Genomic Region

17394 lipase, hormone sensitive

Details for mCG_147818 - lipase, hormone sensitive

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16890

Tuberculist Genomic Region

18516 matrix metallopeptidase 8

Details for - - matrix metallopeptidase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17394

Tuberculist Genomic Region

20266 pre B cell leukemia homeobox 3

Details for RP23-438I5.1 - pre B cell leukemia homeobox 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18516

Tuberculist Genomic Region

230979 sodium channel, voltage-gated, type I, beta

Details for - - sodium channel, voltage-gated, type I, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20266

Tuberculist Genomic Region

231532 tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)

Details for RP24-89N4.1 - tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230979

Tuberculist Genomic Region

233064 Rho GTPase activating protein 24

Details for - - Rho GTPase activating protein 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231532

Tuberculist Genomic Region

234515 WD repeat domain 62

Details for - - WD repeat domain 62

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233064

Tuberculist Genomic Region

237860 inositol polyphosphate-4-phosphatase, type II

Details for - - inositol polyphosphate-4-phosphatase, type II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234515

Tuberculist Genomic Region

238722 slingshot homolog 2 (Drosophila)

Details for RP23-285D3.1 - slingshot homolog 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237860

Tuberculist Genomic Region

27218 zinc finger protein 72

Details for - - zinc finger protein 72

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238722

Tuberculist Genomic Region

29812 signaling lymphocytic activation molecule family member 1

Details for - - signaling lymphocytic activation molecule family member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27218

Tuberculist Genomic Region

329693 N-myc downstream regulated gene 3

Details for RP24-482A24.9 - N-myc downstream regulated gene 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29812

Tuberculist Genomic Region

380713 Fc receptor-like 5

Details for - - Fc receptor-like 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329693

Tuberculist Genomic Region

414801 scavenger receptor class F, member 1

Details for RP23-384C18.11-001 - scavenger receptor class F, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380713

Tuberculist Genomic Region

52585 inositol 1,4,5-triphosphate receptor interacting protein

Details for - - inositol 1,4,5-triphosphate receptor interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 414801

Tuberculist Genomic Region

66425 dehydrogenase/reductase (SDR family) member 1

Details for - - dehydrogenase/reductase (SDR family) member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52585

Tuberculist Genomic Region

66795 Purkinje cell protein 4-like 1

Details for - - Purkinje cell protein 4-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66425

Tuberculist Genomic Region

67547 autophagy related 10

Details for - - autophagy related 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66795

Tuberculist Genomic Region

67865 solute carrier family 39 (metal ion transporter), member 8

Details for - - solute carrier family 39 (metal ion transporter), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67547

Tuberculist Genomic Region

71846 regulator of G-protein signalling 10

Details for - - regulator of G-protein signalling 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67865

Tuberculist Genomic Region

73724 synaptonemal complex central element protein 2

Details for - - synaptonemal complex central element protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71846

Tuberculist Genomic Region

74149 methylmalonyl CoA epimerase

Details for - - methylmalonyl CoA epimerase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73724

Tuberculist Genomic Region

77011 zinc finger protein 946

Details for - - zinc finger protein 946

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74149

Tuberculist Genomic Region

98682 TOPBP1-interacting checkpoint and replication regulator

Details for - - TOPBP1-interacting checkpoint and replication regulator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77011

Tuberculist Genomic Region

Details for - - major facilitator superfamily domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98682

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000047 AAAAANAAAANA NA 220 AMATRTTTTMA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.94 GNCGCG Zfp161.2 1.12 GGCGCGNA V$E2F_Q2_M00803, V$E2F3_Q6_M02089

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.52 CGCACG NA NA 0.73 GACCNATC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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