PITA_229 megaCluster: 2 Residual: 0.16 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_229	2	0.16	15	0.016	0.946101	0

Members

Displaying 1 - 22 of 22

209086 sterile alpha motif domain containing 9-like Details for - - sterile alpha motif domain containing 9-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209086 Tuberculist Genomic Region	70617 RIKEN cDNA 5730508B09 gene Details for - - RIKEN cDNA 5730508B09 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70617 Tuberculist Genomic Region
100043424 predicted gene 14005 Details for - - predicted gene 14005 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100043424 Tuberculist Genomic Region	11853 ras homolog gene family, member C Details for - - ras homolog gene family, member C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11853 Tuberculist Genomic Region
13163 Fas death domain-associated protein Details for - - Fas death domain-associated protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13163 Tuberculist Genomic Region	14265 fragile X mental retardation syndrome 1 Details for - - fragile X mental retardation syndrome 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14265 Tuberculist Genomic Region
14469 guanylate binding protein 2 Details for - - guanylate binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14469 Tuberculist Genomic Region	209387 tripartite motif-containing 30D Details for - - tripartite motif-containing 30D GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209387 Tuberculist Genomic Region
209645 BEN domain containing 7 Details for RP23-198G1.1 - BEN domain containing 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209645 Tuberculist Genomic Region	20969 syndecan 1 Details for - - syndecan 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20969 Tuberculist Genomic Region
21810 transforming growth factor, beta induced Details for - - transforming growth factor, beta induced GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21810 Tuberculist Genomic Region	22035 tumor necrosis factor (ligand) superfamily, member 10 Details for - - tumor necrosis factor (ligand) superfamily, member 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22035 Tuberculist Genomic Region
229900 guanylate binding protein 7 Details for - - guanylate binding protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229900 Tuberculist Genomic Region	234311 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 234311 Tuberculist Genomic Region
237887 schlafen 10, pseudogene Details for - - schlafen 10, pseudogene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 237887 Tuberculist Genomic Region	240665 cyclin J Details for - - cyclin J GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240665 Tuberculist Genomic Region
24127 5'-3' exoribonuclease 1 Details for - - 5'-3' exoribonuclease 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 24127 Tuberculist Genomic Region	55932 guanylate binding protein 3 Details for - - guanylate binding protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 55932 Tuberculist Genomic Region
666907 membrane-spanning 4-domains, subfamily A, member 4A Details for - - membrane-spanning 4-domains, subfamily A, member 4A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 666907 Tuberculist Genomic Region	667373 predicted gene 14446 Details for - - predicted gene 14446 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 667373 Tuberculist Genomic Region
67245 pellino 1 Details for RP23-93O11.1 - pellino 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67245 Tuberculist Genomic Region	80285 poly (ADP-ribose) polymerase family, member 9 Details for - - poly (ADP-ribose) polymerase family, member 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80285 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ISGF3G_03_M02771	0.473684	0.000000000068

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.000035	NGAAANYGAAAC	STAT1_MA0137.1, IRF1_MA0050.1, IRF2_MA0051.1, V$ISRE_01_M00258, V$IRF_Q6_01_M00972, V$IRF2_Q6_M01882, V$IRF_Q6_M00772, V$ICSBP_Q6_M00699, V$ISGF3G_03_M02771, V$IRF1_Q6_01_M01881, V$IRF1_01_M00062, V$IRF5_03_M02769, V$IRF3_05_M02767, V$IRF1_Q6_M00747, V$IRF7_01_M00453, V$IRF2_01_M00063, V$BLIMP1_Q6_M01066, Isgf3g.1, Irf5.2, Irf3.1, IRF3_IRF_full_trimeric_21_1, IRF9_IRF_full_trimeric_15_1, IRF7_IRF_DBD_dimeric_14_1, IRF8_IRF_full_dimeric_14_1, IRF4_IRF_full_dimeric_15_1, PRDM1_C2H2_full_monomeric-or-dimeric_15_1, IRF5_IRF_full_dimeric_14_1	960	ACTTTTTTTYT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.93	CGTCGG	NA	1.22	GTCGRCGG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.97	TGACAAAA	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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