PITA_24 megaCluster: 8 Residual: 0.18 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_24	8	0.18	15	0	0.938748	0

Members

Displaying 1 - 36 of 36

13185 expressed sequence AI467606 Details for - - expressed sequence AI467606 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 101602 Tuberculist Genomic Region	14651 Down syndrome critical region gene 3 Details for - - Down syndrome critical region gene 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13185 Tuberculist Genomic Region
170719 hydroxyacyl glutathione hydrolase Details for - - hydroxyacyl glutathione hydrolase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14651 Tuberculist Genomic Region	17120 oxidation resistance 1 Details for - - oxidation resistance 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170719 Tuberculist Genomic Region
17193 MAD1 mitotic arrest deficient 1-like 1 Details for - - MAD1 mitotic arrest deficient 1-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17120 Tuberculist Genomic Region	18747 methyl-CpG binding domain protein 4 Details for - - methyl-CpG binding domain protein 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17193 Tuberculist Genomic Region
192678 protein kinase, cAMP dependent, catalytic, alpha Details for - - protein kinase, cAMP dependent, catalytic, alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18747 Tuberculist Genomic Region	19765 Ras association (RalGDS/AF-6) domain family member 3 Details for - - Ras association (RalGDS/AF-6) domain family member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 192678 Tuberculist Genomic Region
215243 ralA binding protein 1 Details for - - ralA binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19765 Tuberculist Genomic Region	219022 TRAF3 interacting protein 3 Details for RP23-282D4.1 - TRAF3 interacting protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 215243 Tuberculist Genomic Region
227094 tetratricopeptide repeat domain 5 Details for - - tetratricopeptide repeat domain 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 219022 Tuberculist Genomic Region	232337 transmembrane protein 194B Details for - - transmembrane protein 194B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227094 Tuberculist Genomic Region
26401 zinc finger protein 637 Details for - - zinc finger protein 637 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 232337 Tuberculist Genomic Region	269180 mitogen-activated protein kinase kinase kinase 1 Details for - - mitogen-activated protein kinase kinase kinase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 26401 Tuberculist Genomic Region
270076 inositol polyphosphate-4-phosphatase, type I Details for - - inositol polyphosphate-4-phosphatase, type I GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269180 Tuberculist Genomic Region	319190 glutaryl-Coenzyme A dehydrogenase Details for - - glutaryl-Coenzyme A dehydrogenase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 270076 Tuberculist Genomic Region
641376 histone cluster 2, H2be Details for - - histone cluster 2, H2be GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319190 Tuberculist Genomic Region	66953 translocase of outer mitochondrial membrane 40 homolog-like (yeast) Details for - - translocase of outer mitochondrial membrane 40 homolog-like (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 641376 Tuberculist Genomic Region
67105 cell division cycle associated 7 Details for RP23-146F24.2 - cell division cycle associated 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66953 Tuberculist Genomic Region	67326 tranlocase of inner mitochondrial membrane 21 Details for - - tranlocase of inner mitochondrial membrane 21 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67105 Tuberculist Genomic Region
68767 RIKEN cDNA 1700037H04 gene Details for RP23-32L15.2 - RIKEN cDNA 1700037H04 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67326 Tuberculist Genomic Region	69069 WAS protein family homolog Details for - - WAS protein family homolog GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68767 Tuberculist Genomic Region
69724 RIKEN cDNA 1810011H11 gene Details for - - RIKEN cDNA 1810011H11 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69069 Tuberculist Genomic Region	70238 ribonuclease H2, large subunit Details for - - ribonuclease H2, large subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69724 Tuberculist Genomic Region
70381 ring finger protein 168 Details for - - ring finger protein 168 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70238 Tuberculist Genomic Region	79221 tectonin beta-propeller repeat containing 1 Details for - - tectonin beta-propeller repeat containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70381 Tuberculist Genomic Region
100503821 histone deacetylase 9 Details for - - histone deacetylase 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 79221 Tuberculist Genomic Region	216724 predicted gene, 19912 Details for - - predicted gene, 19912 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503821 Tuberculist Genomic Region
223776 RUN and FYVE domain containing 1 Details for RP23-121P11.2 - RUN and FYVE domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216724 Tuberculist Genomic Region	17688 selenoprotein O Details for - - selenoprotein O GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 223776 Tuberculist Genomic Region
17850 mutS homolog 6 (E. coli) Details for - - mutS homolog 6 (E. coli) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17688 Tuberculist Genomic Region	19687 methylmalonyl-Coenzyme A mutase Details for - - methylmalonyl-Coenzyme A mutase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17850 Tuberculist Genomic Region
71085 replication factor C (activator 1) 1 Details for - - replication factor C (activator 1) 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19687 Tuberculist Genomic Region	74114 Rho GTPase activating protein 19 Details for - - Rho GTPase activating protein 19 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71085 Tuberculist Genomic Region
208194 carnitine O-octanoyltransferase Details for - - carnitine O-octanoyltransferase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74114 Tuberculist Genomic Region	Details for - - endo/exonuclease (5'-3'), endonuclease G-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 208194 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00049	AAAAAAAWAAAA	NA	64	GGGCGGGGCCNC	Klf4_MA0039.2, V$KLF7_03_M02773, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$SP1_Q6_M00196, V$GC_01_M00255, V$SP1_Q4_01_M00932, V$SP2_01_M01783, V$GKLF_02_M01588, V$SP1_Q2_01_M00933, V$SP1_02_M01303, V$MAZR_01_M00491, V$E2F3_Q6_M02089, V$UF1H3BETA_Q6_M01068, V$SP4_03_M02810, V$SMAD4_04_M02898, V$SP4_04_M02914, V$CACD_01_M01113, V$ZFP281_01_M01597, V$SP1_03_M02281, V$CKROX_Q2_M01175, V$SP1_01_M00008, V$MAZ_Q6_M00649, V$KROX_Q6_M00982, V$EGR1_06_M02744, Klf7.1, Sp4.1, Sp4.2, Smad3.1, Egr1.1, Zfp281.2, Zfp740.1, Bcl6b.2, Zif268.1, Ascl2.2, Zfp410.1, Klf7.2, Sox13.2, Zfp161.2, SP4_C2H2_full_monomeric_17_1, KLF14_C2H2_DBD_monomeric_14_1, KLF13_C2H2_full_monomeric_18_1, Klf12_C2H2_DBD_monomeric_15_1, KLF16_C2H2_DBD_monomeric_11_1, SP1_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.22	CGCGGT	NA	1.33	TGCGCGGT	Zfp161.2

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.54	CGCTCG	NA	NA	0.57	GCCTCAAG	mmu-mir-327	7mer_a1

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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