PITA_39 megaCluster: 4 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_39 4 0.19 15 0 0.934085 0

Members

Displaying 1 - 31 of 31
104103 antisense Igf2r RNA

Details for - - antisense Igf2r RNA

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104103

Tuberculist Genomic Region

11475 actin, alpha 2, smooth muscle, aorta

Details for - - actin, alpha 2, smooth muscle, aorta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11475

Tuberculist Genomic Region

12111 biglycan

Details for RP23-95K12.7 - biglycan

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12111

Tuberculist Genomic Region

12552 cadherin 11

Details for - - cadherin 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12552

Tuberculist Genomic Region

14219 connective tissue growth factor

Details for - - connective tissue growth factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14219

Tuberculist Genomic Region

14268 fibronectin 1

Details for - - fibronectin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14268

Tuberculist Genomic Region

14314 follistatin-like 1

Details for - - follistatin-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14314

Tuberculist Genomic Region

14389 growth factor receptor bound protein 2-associated protein 2

Details for - - growth factor receptor bound protein 2-associated protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14389

Tuberculist Genomic Region

16007 cysteine rich protein 61

Details for - - cysteine rich protein 61

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16007

Tuberculist Genomic Region

20210 serum amyloid A 3

Details for - - serum amyloid A 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20210

Tuberculist Genomic Region

20317 serine (or cysteine) peptidase inhibitor, clade F, member 1

Details for RP23-384C18.1 - serine (or cysteine) peptidase inhibitor, clade F, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20317

Tuberculist Genomic Region

20321 ferric-chelate reductase 1

Details for - - ferric-chelate reductase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20321

Tuberculist Genomic Region

20530 solute carrier family 31, member 2

Details for RP23-64F17.2 - solute carrier family 31, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20530

Tuberculist Genomic Region

20692 secreted acidic cysteine rich glycoprotein

Details for RP23-465I4.1 - secreted acidic cysteine rich glycoprotein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20692

Tuberculist Genomic Region

22290 ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome

Details for - - ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22290

Tuberculist Genomic Region

223593 RIKEN cDNA E430025E21 gene

Details for - - RIKEN cDNA E430025E21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223593

Tuberculist Genomic Region

227331 GRB10 interacting GYF protein 2

Details for - - GRB10 interacting GYF protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227331

Tuberculist Genomic Region

230598 nardilysin, N-arginine dibasic convertase, NRD convertase 1

Details for RP23-188A12.1 - nardilysin, N-arginine dibasic convertase, NRD convertase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230598

Tuberculist Genomic Region

240613 RIKEN cDNA 9930021J03 gene

Details for - - RIKEN cDNA 9930021J03 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240613

Tuberculist Genomic Region

269799 C-type lectin domain family 4, member a1

Details for - - C-type lectin domain family 4, member a1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269799

Tuberculist Genomic Region

57315 WD repeat domain 46

Details for - - WD repeat domain 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57315

Tuberculist Genomic Region

67267 ubiquinol-cytochrome c reductase complex assembly factor 2

Details for - - ubiquinol-cytochrome c reductase complex assembly factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67267

Tuberculist Genomic Region

68165 ferredoxin 1-like

Details for - - ferredoxin 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68165

Tuberculist Genomic Region

68724 ADP-ribosylation factor-like 8A

Details for - - ADP-ribosylation factor-like 8A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68724

Tuberculist Genomic Region

68728 transformation related protein 53 inducible nuclear protein 2

Details for RP23-32O9.1 - transformation related protein 53 inducible nuclear protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68728

Tuberculist Genomic Region

69162 Sec31 homolog A (S. cerevisiae)

Details for - - Sec31 homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69162

Tuberculist Genomic Region

71750 R3H domain containing 2

Details for - - R3H domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71750

Tuberculist Genomic Region

73178 Wiskott-Aldrich syndrome-like (human)

Details for - - Wiskott-Aldrich syndrome-like (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73178

Tuberculist Genomic Region

75956 serine/arginine repetitive matrix 2

Details for - - serine/arginine repetitive matrix 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75956

Tuberculist Genomic Region

98366 small ArfGAP 1

Details for - - small ArfGAP 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98366

Tuberculist Genomic Region

27275 nuclear fragile X mental retardation protein interacting protein 1

Details for - - nuclear fragile X mental retardation protein interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27275

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000000085 AAARAAAAAAAA NA 25 NTTTNAATTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.07 GACGCT NA 1.21 CCGGNNCG Elk3.1, Elk1.1, Gabpa.3, Etv3.1, Etv5.1, Elk4.1, Gm4881.1, Etv1.1, Gm5454.1, Ets1.1, Elf2.1, Etv4.1, Erg.1, Fli1.1, Etv6.1, Elf4.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.46 GACNTG NA NA 0.6 CGGATAGC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-669f-5p 0.142857 0.0000344

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