PITA_41 megaCluster: 1 Residual: 0.17 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_41	1	0.17	15	0.1	0.942435	0

Members

Displaying 1 - 19 of 19

12515 acid phosphatase 5, tartrate resistant Details for - - acid phosphatase 5, tartrate resistant GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11433 Tuberculist Genomic Region	14571 CD69 antigen Details for - - CD69 antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12515 Tuberculist Genomic Region
14579 glycerol phosphate dehydrogenase 2, mitochondrial Details for - - glycerol phosphate dehydrogenase 2, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14571 Tuberculist Genomic Region	16452 GTP binding protein (gene overexpressed in skeletal muscle) Details for RP23-54P14.1 - GTP binding protein (gene overexpressed in skeletal muscle) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14579 Tuberculist Genomic Region
17857 Janus kinase 2 Details for - - Janus kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16452 Tuberculist Genomic Region	17858 myxovirus (influenza virus) resistance 1 Details for - - myxovirus (influenza virus) resistance 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17857 Tuberculist Genomic Region
18035 myxovirus (influenza virus) resistance 2 Details for - - myxovirus (influenza virus) resistance 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17858 Tuberculist Genomic Region	21817 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18035 Tuberculist Genomic Region
245126 transglutaminase 2, C polypeptide Details for RP23-396G1.2 - transglutaminase 2, C polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21817 Tuberculist Genomic Region	56715 T cell-interacting, activating receptor on myeloid cells 1 Details for - - T cell-interacting, activating receptor on myeloid cells 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 245126 Tuberculist Genomic Region
667373 RAB guanine nucleotide exchange factor (GEF) 1 Details for - - RAB guanine nucleotide exchange factor (GEF) 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56715 Tuberculist Genomic Region	68732 predicted gene 14446 Details for - - predicted gene 14446 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 667373 Tuberculist Genomic Region
74732 leucine rich repeat containing 16A Details for RP23-462P2.7 - leucine rich repeat containing 16A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68732 Tuberculist Genomic Region	22350 syntaxin 11 Details for - - syntaxin 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74732 Tuberculist Genomic Region
60406 ezrin Details for - - ezrin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22350 Tuberculist Genomic Region	72446 sin3 associated polypeptide Details for - - sin3 associated polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 60406 Tuberculist Genomic Region
74646 proline rich 5 like Details for RP23-325I3.4 - proline rich 5 like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72446 Tuberculist Genomic Region	54199 splA/ryanodine receptor domain and SOCS box containing 1 Details for RP23-169H13.1 - splA/ryanodine receptor domain and SOCS box containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74646 Tuberculist Genomic Region
Details for - - chemokine (C-C motif) receptor-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54199 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_SZF11_01_M01109	0.736842	0.0000000742

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00029	TTTNTCTTYTC	NA	2300	AGCNGGNAGGG	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.92	CGCTGG	NA	1.12	CCCGCTGG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.77	GAANGAGC	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-466l-3p	0.8	0.0000061

Add comment

Log in or register to post comments