PITA_53 megaCluster: 2 Residual: 0.08 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_53	2	0.08	15	0.016	0.986738	0

Members

Displaying 1 - 9 of 9

100043424 predicted gene 14005 Details for - - predicted gene 14005 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100043424 Tuberculist Genomic Region	13163 Fas death domain-associated protein Details for - - Fas death domain-associated protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13163 Tuberculist Genomic Region
54199 chemokine (C-C motif) receptor-like 2 Details for - - chemokine (C-C motif) receptor-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54199 Tuberculist Genomic Region	74646 splA/ryanodine receptor domain and SOCS box containing 1 Details for RP23-169H13.1 - splA/ryanodine receptor domain and SOCS box containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74646 Tuberculist Genomic Region
80285 poly (ADP-ribose) polymerase family, member 9 Details for - - poly (ADP-ribose) polymerase family, member 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80285 Tuberculist Genomic Region	12515 CD69 antigen Details for - - CD69 antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12515 Tuberculist Genomic Region
16452 Janus kinase 2 Details for - - Janus kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16452 Tuberculist Genomic Region	17857 myxovirus (influenza virus) resistance 1 Details for - - myxovirus (influenza virus) resistance 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17857 Tuberculist Genomic Region
74732 syntaxin 11 Details for - - syntaxin 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74732 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_GC_01_M00255, V_RREB1_01_M00257, V_CTCF_02_M01259, V_SP1_Q4_01_M00932	1, 1, 1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
1500	CAGARAGCNAAG	NA	2600	TYCGTTTCTGAG	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.3	CGTCGG	NA	2.31	ARCCCGCA	Gcm1.1, GCM2_GCM_DBD_monomeric_10_1, GCM1_GCM_DBD_monomeric_10_1, GCM1_GCM_full_monomeric_11_1

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.94	CGCCGT	NA	NA	1.88	AAGMNTTG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-186	1	0

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

Add comment

Log in or register to post comments