PITA_66 megaCluster: 8 Residual: 0.16

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_66 8 0.16 15 0 0.951698 0

Members

Displaying 1 - 26 of 26
103268 centrosomal protein 57-like 1

Details for - - centrosomal protein 57-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103268

Tuberculist Genomic Region

103711 pyridoxine 5'-phosphate oxidase

Details for RP23-353J21.11-001 - pyridoxine 5'-phosphate oxidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103711

Tuberculist Genomic Region

11545 poly (ADP-ribose) polymerase family, member 1

Details for - - poly (ADP-ribose) polymerase family, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11545

Tuberculist Genomic Region

12802 cannabinoid receptor 2 (macrophage)

Details for RP23-161N17.5 - cannabinoid receptor 2 (macrophage)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12802

Tuberculist Genomic Region

13360 7-dehydrocholesterol reductase

Details for - - 7-dehydrocholesterol reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13360

Tuberculist Genomic Region

20751 sepiapterin reductase

Details for - - sepiapterin reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20751

Tuberculist Genomic Region

22156 tuftelin 1

Details for - - tuftelin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22156

Tuberculist Genomic Region

22666 zinc finger and BTB domain containing 14

Details for - - zinc finger and BTB domain containing 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22666

Tuberculist Genomic Region

26462 thioredoxin reductase 2

Details for - - thioredoxin reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26462

Tuberculist Genomic Region

26904 SH2 domain protein 1B1

Details for - - SH2 domain protein 1B1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26904

Tuberculist Genomic Region

321007 serine active site containing 1

Details for - - serine active site containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 321007

Tuberculist Genomic Region

51798 enoyl coenzyme A hydratase 1, peroxisomal

Details for - - enoyl coenzyme A hydratase 1, peroxisomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 51798

Tuberculist Genomic Region

54607 suppressor of cytokine signaling 6

Details for - - suppressor of cytokine signaling 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54607

Tuberculist Genomic Region

68002 RIKEN cDNA 1110058L19 gene

Details for - - RIKEN cDNA 1110058L19 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68002

Tuberculist Genomic Region

70209 transmembrane protein 143

Details for - - transmembrane protein 143

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70209

Tuberculist Genomic Region

71891 cytidine and dCMP deaminase domain containing 1

Details for - - cytidine and dCMP deaminase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71891

Tuberculist Genomic Region

72519 transmembrane protein 55A

Details for RP23-379L17.2 - transmembrane protein 55A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72519

Tuberculist Genomic Region

73668 tetratricopeptide repeat domain 21B

Details for RP23-353H5.2 - tetratricopeptide repeat domain 21B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73668

Tuberculist Genomic Region

14957 histone cluster 1, H1d

Details for mCG_50184 - histone cluster 1, H1d

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14957

Tuberculist Genomic Region

170787 histone deacetylase 10

Details for - - histone deacetylase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170787

Tuberculist Genomic Region

270198 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4

Details for - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 270198

Tuberculist Genomic Region

29858 phosphomannomutase 1

Details for - - phosphomannomutase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29858

Tuberculist Genomic Region

66948 acyl-Coenzyme A dehydrogenase family, member 8

Details for - - acyl-Coenzyme A dehydrogenase family, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66948

Tuberculist Genomic Region

71375 forkhead box N3

Details for - - forkhead box N3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71375

Tuberculist Genomic Region

72154 zinc finger protein 157

Details for - - zinc finger protein 157

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72154

Tuberculist Genomic Region

74610 ATP-binding cassette, sub-family B (MDR/TAP), member 8

Details for - - ATP-binding cassette, sub-family B (MDR/TAP), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74610

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
2 CTTTTTNNTTT NA 12 TNTTTTMAAATT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.1 ACCGCG NA 1.33 TGCGCCCT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.62 TCTCCG NA NA 0.77 CGTCTCCG mmu-mir-139-3p 7mer_a1

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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