PITA_77 megaCluster: 2 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_77 2 0.21 14 0 0.870817 0

Members

Displaying 1 - 31 of 31
12822 collagen, type XVIII, alpha 1

Details for - - collagen, type XVIII, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12822

Tuberculist Genomic Region

15258 homeodomain interacting protein kinase 2

Details for - - homeodomain interacting protein kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15258

Tuberculist Genomic Region

16169 interleukin 15 receptor, alpha chain

Details for RP23-114B13.4 - interleukin 15 receptor, alpha chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16169

Tuberculist Genomic Region

16363 interferon regulatory factor 2

Details for - - interferon regulatory factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16363

Tuberculist Genomic Region

17386 matrix metallopeptidase 13

Details for - - matrix metallopeptidase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17386

Tuberculist Genomic Region

19088 protein kinase, cAMP dependent regulatory, type II beta

Details for RP23-193M19.1 - protein kinase, cAMP dependent regulatory, type II beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19088

Tuberculist Genomic Region

20167 reticulon 2 (Z-band associated protein)

Details for - - reticulon 2 (Z-band associated protein)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20167

Tuberculist Genomic Region

20351 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

Details for - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20351

Tuberculist Genomic Region

218793 ubiquitin-conjugating enzyme E2E 2

Details for - - ubiquitin-conjugating enzyme E2E 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218793

Tuberculist Genomic Region

22029 TNF receptor-associated factor 1

Details for RP23-9N11.6 - TNF receptor-associated factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22029

Tuberculist Genomic Region

22271 uridine phosphorylase 1

Details for RP23-104F14.1 - uridine phosphorylase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22271

Tuberculist Genomic Region

227659 solute carrier family 2 (facilitated glucose transporter), member 6

Details for RP23-449M10.2 - solute carrier family 2 (facilitated glucose transporter), member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227659

Tuberculist Genomic Region

22793 zyxin

Details for - - zyxin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22793

Tuberculist Genomic Region

29813 zinc finger protein 385A

Details for - - zinc finger protein 385A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29813

Tuberculist Genomic Region

320910 integrin beta 8

Details for - - integrin beta 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320910

Tuberculist Genomic Region

387248 microRNA let7e

Details for - - microRNA let7e

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387248

Tuberculist Genomic Region

433470 expressed sequence AA467197

Details for RP23-101F14.3 - expressed sequence AA467197

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 433470

Tuberculist Genomic Region

55932 guanylate binding protein 3

Details for - - guanylate binding protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 55932

Tuberculist Genomic Region

652925 transmembrane protein 243, mitochondrial

Details for - - transmembrane protein 243, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 652925

Tuberculist Genomic Region

671535 poly (ADP-ribose) polymerase family, member 10

Details for - - poly (ADP-ribose) polymerase family, member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 671535

Tuberculist Genomic Region

70661 SIK family kinase 3

Details for - - SIK family kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70661

Tuberculist Genomic Region

107607 nucleotide-binding oligomerization domain containing 1

Details for - - nucleotide-binding oligomerization domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107607

Tuberculist Genomic Region

13807 enolase 2, gamma neuronal

Details for - - enolase 2, gamma neuronal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13807

Tuberculist Genomic Region

20529 solute carrier family 31, member 1

Details for RP24-145P21.1 - solute carrier family 31, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20529

Tuberculist Genomic Region

68255 transmembrane protein 86B

Details for - - transmembrane protein 86B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68255

Tuberculist Genomic Region

74704 RIKEN cDNA 4930518I15 gene

Details for - - RIKEN cDNA 4930518I15 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74704

Tuberculist Genomic Region

75202 sperm acrosome associated 6

Details for - - sperm acrosome associated 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75202

Tuberculist Genomic Region

240665 cyclin J

Details for - - cyclin J

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240665

Tuberculist Genomic Region

329795 transmembrane protein 67

Details for RP23-203A12.5 - transmembrane protein 67

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329795

Tuberculist Genomic Region

14733 glypican 1

Details for - - glypican 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14733

Tuberculist Genomic Region

14745 lysophosphatidic acid receptor 1

Details for RP23-170A3.2 - lysophosphatidic acid receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14745

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF2_Q6_M01882 0.482759 0.00000189

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.07 ACGCGG NA 1.17 CCCGCGTG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.69 ACGCGG NA NA 0.87 CNACCCGG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments