PITA_79 megaCluster: 11 Residual: 0.15

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_79 11 0.15 15 0 0.962288 0

Members

Displaying 1 - 26 of 26
11757 peroxiredoxin 3

Details for - - peroxiredoxin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11757

Tuberculist Genomic Region

15388 heterogeneous nuclear ribonucleoprotein L

Details for - - heterogeneous nuclear ribonucleoprotein L

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15388

Tuberculist Genomic Region

217558 G2/M-phase specific E3 ubiquitin ligase

Details for - - G2/M-phase specific E3 ubiquitin ligase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217558

Tuberculist Genomic Region

22083 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

Details for - - Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22083

Tuberculist Genomic Region

231123 HAUS augmin-like complex, subunit 3

Details for - - HAUS augmin-like complex, subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231123

Tuberculist Genomic Region

237823 phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)

Details for RP23-153N12.1 - phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237823

Tuberculist Genomic Region

50799 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

Details for - - solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50799

Tuberculist Genomic Region

52653 NudC domain containing 2

Details for RP23-382C18.4 - NudC domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52653

Tuberculist Genomic Region

57423 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2

Details for - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57423

Tuberculist Genomic Region

66046 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5

Details for - - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66046

Tuberculist Genomic Region

66156 anaphase promoting complex subunit 11

Details for RP23-84C12.5 - anaphase promoting complex subunit 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66156

Tuberculist Genomic Region

66258 mitochondrial ribosomal protein S17

Details for - - mitochondrial ribosomal protein S17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66258

Tuberculist Genomic Region

66925 succinate dehydrogenase complex, subunit D, integral membrane protein

Details for UNQ5809 - succinate dehydrogenase complex, subunit D, integral membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66925

Tuberculist Genomic Region

67203 nuclear distribution gene E homolog 1 (A nidulans)

Details for - - nuclear distribution gene E homolog 1 (A nidulans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67203

Tuberculist Genomic Region

69554 kelch domain containing 2

Details for - - kelch domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69554

Tuberculist Genomic Region

74326 heterogeneous nuclear ribonucleoprotein R

Details for RP24-315O23.1 - heterogeneous nuclear ribonucleoprotein R

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74326

Tuberculist Genomic Region

75619 FAST kinase domains 2

Details for - - FAST kinase domains 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75619

Tuberculist Genomic Region

76687 signal peptidase complex subunit 3 homolog (S. cerevisiae)

Details for - - signal peptidase complex subunit 3 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76687

Tuberculist Genomic Region

15473 heat-responsive protein 12

Details for - - heat-responsive protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15473

Tuberculist Genomic Region

20174 RuvB-like protein 2

Details for - - RuvB-like protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20174

Tuberculist Genomic Region

269470 WD repeat domain 3

Details for - - WD repeat domain 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269470

Tuberculist Genomic Region

56040 ribosomal protein, large, P1

Details for - - ribosomal protein, large, P1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56040

Tuberculist Genomic Region

66586 cardiolipin synthase 1

Details for RP23-77H16.4 - cardiolipin synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66586

Tuberculist Genomic Region

69957 CDC16 cell division cycle 16

Details for - - CDC16 cell division cycle 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69957

Tuberculist Genomic Region

70829 coiled-coil domain containing 93

Details for - - coiled-coil domain containing 93

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70829

Tuberculist Genomic Region

84652 family with sequence similarity 126, member A

Details for - - family with sequence similarity 126, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 84652

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_CETS1_02_M02063 0.384615 0.0000122

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.24 TYNTNTCTWTK NA 2200 AWTTTGATWT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.41 GACGCG NA 1.85 GGCGCGNT V$E2F_Q2_M00803

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.81 TGYNTCCT NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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