PITA_97 megaCluster: 10 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_97 10 0.24 15 0 0.892944 0

Members

Displaying 1 - 36 of 36
100088 regulator of chromosome condensation 1

Details for WI1-2643G14.3 - regulator of chromosome condensation 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100088

Tuberculist Genomic Region

107769 transmembrane 6 superfamily member 1

Details for - - transmembrane 6 superfamily member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107769

Tuberculist Genomic Region

107823 Wolf-Hirschhorn syndrome candidate 1 (human)

Details for - - Wolf-Hirschhorn syndrome candidate 1 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107823

Tuberculist Genomic Region

109658 taxilin alpha

Details for RP23-151A15.8 - taxilin alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109658

Tuberculist Genomic Region

11555 adrenergic receptor, beta 2

Details for - - adrenergic receptor, beta 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11555

Tuberculist Genomic Region

12721 coronin, actin binding protein 1A

Details for - - coronin, actin binding protein 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12721

Tuberculist Genomic Region

14194 fumarate hydratase 1

Details for - - fumarate hydratase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14194

Tuberculist Genomic Region

15488 hydroxysteroid (17-beta) dehydrogenase 4

Details for - - hydroxysteroid (17-beta) dehydrogenase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15488

Tuberculist Genomic Region

17449 malate dehydrogenase 1, NAD (soluble)

Details for RP23-198N8.1 - malate dehydrogenase 1, NAD (soluble)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17449

Tuberculist Genomic Region

18194 NAD(P) dependent steroid dehydrogenase-like

Details for RP23-307G22.4 - NAD(P) dependent steroid dehydrogenase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18194

Tuberculist Genomic Region

213068 transmembrane protein 71

Details for - - transmembrane protein 71

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213068

Tuberculist Genomic Region

225659 centrosomal protein 76

Details for - - centrosomal protein 76

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225659

Tuberculist Genomic Region

227707 cDNA sequence BC005624

Details for RP23-221O14.10-001 - cDNA sequence BC005624

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227707

Tuberculist Genomic Region

320782 transmembrane protein 154

Details for - - transmembrane protein 154

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320782

Tuberculist Genomic Region

67460 2,4-dienoyl CoA reductase 1, mitochondrial

Details for RP23-338J24.3 - 2,4-dienoyl CoA reductase 1, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67460

Tuberculist Genomic Region

68631 crystallin, lambda 1

Details for - - crystallin, lambda 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68631

Tuberculist Genomic Region

73327 protease-associated domain containing 1

Details for - - protease-associated domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73327

Tuberculist Genomic Region

73451 zinc finger protein 763

Details for - - zinc finger protein 763

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73451

Tuberculist Genomic Region

74600 mitochondrial ribosomal protein L47

Details for - - mitochondrial ribosomal protein L47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74600

Tuberculist Genomic Region

75786 cytoskeleton associated protein 5

Details for RP23-176N9.2 - cytoskeleton associated protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75786

Tuberculist Genomic Region

80905 polymerase (DNA directed), eta (RAD 30 related)

Details for - - polymerase (DNA directed), eta (RAD 30 related)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80905

Tuberculist Genomic Region

107566 ADP-ribosylation factor-like 2 binding protein

Details for - - ADP-ribosylation factor-like 2 binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107566

Tuberculist Genomic Region

18082 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)

Details for RP23-64E17.1 - 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18082

Tuberculist Genomic Region

22129 tetratricopeptide repeat domain 3

Details for - - tetratricopeptide repeat domain 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22129

Tuberculist Genomic Region

238875 Grb2-binding adaptor, transmembrane

Details for - - Grb2-binding adaptor, transmembrane

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238875

Tuberculist Genomic Region

24017 ring finger protein 13

Details for - - ring finger protein 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24017

Tuberculist Genomic Region

27027 tetraspanin 32

Details for - - tetraspanin 32

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27027

Tuberculist Genomic Region

68002 RIKEN cDNA 1110058L19 gene

Details for - - RIKEN cDNA 1110058L19 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68002

Tuberculist Genomic Region

69221 RIKEN cDNA 2410006H16 gene

Details for - - RIKEN cDNA 2410006H16 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69221

Tuberculist Genomic Region

70561 thioredoxin domain containing 16

Details for - - thioredoxin domain containing 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70561

Tuberculist Genomic Region

71891 cytidine and dCMP deaminase domain containing 1

Details for - - cytidine and dCMP deaminase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71891

Tuberculist Genomic Region

72486 ring finger protein 219

Details for - - ring finger protein 219

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72486

Tuberculist Genomic Region

75007 family with sequence similarity 63, member A

Details for - - family with sequence similarity 63, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75007

Tuberculist Genomic Region

77605 H2A histone family, member V

Details for RP23-74L9.1 - H2A histone family, member V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77605

Tuberculist Genomic Region

11907 arginyltransferase 1

Details for - - arginyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11907

Tuberculist Genomic Region

216134 pyridoxal (pyridoxine, vitamin B6) kinase

Details for - - pyridoxal (pyridoxine, vitamin B6) kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216134

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_MEIS2_01_M01488 0.257143 0.0000157

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000033 YAAAAAANAAAA NA 170 AAAWTGTCAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.04 CCTCGC NA 1.18 NCGCGCGN V$E2F1_Q3_01_M00938, V$E2F_03_M00516, V$E2F_Q6_01_M00920, V$E2F_Q4_01_M00919, V$E2F_01_M00024, E2F2.1, E2F3.1, Zfp161.1, Zfp161.2, Max.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.43 TAGTGC NA NA 0.53 CTGGTCAA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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