TargetScan_115 megaCluster: 10 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_115 10 0.14 15 0 0.965926 0

Members

Displaying 1 - 24 of 24
12448 cyclin E2

Details for RP23-343F17.5 - cyclin E2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12448

Tuberculist Genomic Region

19075 DNA primase, p49 subunit

Details for - - DNA primase, p49 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19075

Tuberculist Genomic Region

20937 suppressor of variegation 3-9 homolog 1 (Drosophila)

Details for RP23-27I6.1 - suppressor of variegation 3-9 homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20937

Tuberculist Genomic Region

27214 DBF4 homolog (S. cerevisiae)

Details for - - DBF4 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27214

Tuberculist Genomic Region

12189 centromere protein I

Details for RP23-162B19.4 - centromere protein I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102920

Tuberculist Genomic Region

12545 breast cancer 1

Details for RP23-328K2.8 - breast cancer 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12189

Tuberculist Genomic Region

13361 cell division cycle 7 (S. cerevisiae)

Details for - - cell division cycle 7 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12545

Tuberculist Genomic Region

16881 dihydrofolate reductase

Details for - - dihydrofolate reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13361

Tuberculist Genomic Region

20135 ligase I, DNA, ATP-dependent

Details for - - ligase I, DNA, ATP-dependent

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16881

Tuberculist Genomic Region

20873 ribonucleotide reductase M2

Details for - - ribonucleotide reductase M2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20135

Tuberculist Genomic Region

212377 polo-like kinase 4

Details for - - polo-like kinase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20873

Tuberculist Genomic Region

218121 MMS22-like, DNA repair protein

Details for - - MMS22-like, DNA repair protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212377

Tuberculist Genomic Region

231506 membrane bound O-acyltransferase domain containing 1

Details for RP23-195A2.1 - membrane bound O-acyltransferase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218121

Tuberculist Genomic Region

236266 lin-54 homolog (C. elegans)

Details for - - lin-54 homolog (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231506

Tuberculist Genomic Region

237877 Alstrom syndrome 1

Details for - - Alstrom syndrome 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236266

Tuberculist Genomic Region

237911 ATPase family, AAA domain containing 5

Details for RP23-328O2.1 - ATPase family, AAA domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237877

Tuberculist Genomic Region

52504 BRCA1 interacting protein C-terminal helicase 1

Details for RP23-36C4.3 - BRCA1 interacting protein C-terminal helicase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237911

Tuberculist Genomic Region

66140 centromere protein O

Details for RP23-6C18.1 - centromere protein O

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52504

Tuberculist Genomic Region

66634 spindle and kinetochore associated complex subunit 2

Details for RP23-352L3.5 - spindle and kinetochore associated complex subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66140

Tuberculist Genomic Region

66929 minichromosome maintenance deficient 8 (S. cerevisiae)

Details for RP23-77H16.3 - minichromosome maintenance deficient 8 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66634

Tuberculist Genomic Region

68092 ASF1 anti-silencing function 1 homolog B (S. cerevisiae)

Details for - - ASF1 anti-silencing function 1 homolog B (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66929

Tuberculist Genomic Region

71643 nuclear cap binding protein subunit 2

Details for - - nuclear cap binding protein subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68092

Tuberculist Genomic Region

71988 RIKEN cDNA 4930422G04 gene

Details for - - RIKEN cDNA 4930422G04 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71643

Tuberculist Genomic Region

Details for - - establishment of cohesion 1 homolog 2 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71988

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_E2F_Q3_01_M00918 0.291667 0.00000941

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
13 TTKTTTNCTTNA NA 7.6 ATYTNTMAAWAT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.48 ACGCCG NA 1.85 GCGCGAAT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.7 TACTAG NA NA 1.02 TAGGCAAT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-369-3p 0.5 0.0000107

Add comment

Log in or register to post comments