TargetScan_119 megaCluster: 8 Residual: 0.16

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_119 8 0.16 15 0 0.957259 0

Members

Displaying 1 - 30 of 30
216156 WD repeat domain 18

Details for - - WD repeat domain 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216156

Tuberculist Genomic Region

26462 thioredoxin reductase 2

Details for - - thioredoxin reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26462

Tuberculist Genomic Region

29858 phosphomannomutase 1

Details for - - phosphomannomutase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29858

Tuberculist Genomic Region

66622 ubiquitin protein ligase E3 component n-recognin 7 (putative)

Details for - - ubiquitin protein ligase E3 component n-recognin 7 (putative)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66622

Tuberculist Genomic Region

71710 leucine rich repeat and coiled-coil domain containing 1

Details for - - leucine rich repeat and coiled-coil domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71710

Tuberculist Genomic Region

72050 KDEL (Lys-Asp-Glu-Leu) containing 1

Details for - - KDEL (Lys-Asp-Glu-Leu) containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72050

Tuberculist Genomic Region

12041 branched chain ketoacid dehydrogenase kinase

Details for - - branched chain ketoacid dehydrogenase kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12041

Tuberculist Genomic Region

12626 centrin 3

Details for - - centrin 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12626

Tuberculist Genomic Region

13177 enoyl-Coenzyme A delta isomerase 1

Details for - - enoyl-Coenzyme A delta isomerase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13177

Tuberculist Genomic Region

13595 phenylalkylamine Ca2+ antagonist (emopamil) binding protein

Details for RP23-27I6.10-001 - phenylalkylamine Ca2+ antagonist (emopamil) binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13595

Tuberculist Genomic Region

16970 lymphoid-restricted membrane protein

Details for RP24-216M19.3 - lymphoid-restricted membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16970

Tuberculist Genomic Region

170787 histone deacetylase 10

Details for - - histone deacetylase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170787

Tuberculist Genomic Region

17449 malate dehydrogenase 1, NAD (soluble)

Details for RP23-198N8.1 - malate dehydrogenase 1, NAD (soluble)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17449

Tuberculist Genomic Region

20751 sepiapterin reductase

Details for - - sepiapterin reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20751

Tuberculist Genomic Region

22247 uridine monophosphate synthetase

Details for - - uridine monophosphate synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22247

Tuberculist Genomic Region

227095 3-hydroxyisobutyryl-Coenzyme A hydrolase

Details for - - 3-hydroxyisobutyryl-Coenzyme A hydrolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227095

Tuberculist Genomic Region

237336 TATA box binding protein-like 1

Details for - - TATA box binding protein-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237336

Tuberculist Genomic Region

24060 solute carrier family 35 (CMP-sialic acid transporter), member 1

Details for RP23-76M15.2 - solute carrier family 35 (CMP-sialic acid transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24060

Tuberculist Genomic Region

243025 transmembrane protein 156

Details for - - transmembrane protein 156

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243025

Tuberculist Genomic Region

245828 trafficking protein particle complex 1

Details for RP23-26L6.10-004 - trafficking protein particle complex 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245828

Tuberculist Genomic Region

51798 enoyl coenzyme A hydratase 1, peroxisomal

Details for - - enoyl coenzyme A hydratase 1, peroxisomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 51798

Tuberculist Genomic Region

53893 nudix (nucleoside diphosphate linked moiety X)-type motif 5

Details for RP23-307E15.2 - nudix (nucleoside diphosphate linked moiety X)-type motif 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53893

Tuberculist Genomic Region

66377 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1

Details for - - NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66377

Tuberculist Genomic Region

66671 cyclin H

Details for - - cyclin H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66671

Tuberculist Genomic Region

67005 polymerase (RNA) III (DNA directed) polypeptide K

Details for RP23-322G1.6 - polymerase (RNA) III (DNA directed) polypeptide K

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67005

Tuberculist Genomic Region

68611 mitochondrial ribosomal protein L28

Details for - - mitochondrial ribosomal protein L28

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68611

Tuberculist Genomic Region

70152 methyltransferase like 7A1

Details for - - methyltransferase like 7A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70152

Tuberculist Genomic Region

70544 transmembrane protein 242

Details for - - transmembrane protein 242

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70544

Tuberculist Genomic Region

74164 nuclear transcription factor, X-box binding 1

Details for RP23-28I8.5 - nuclear transcription factor, X-box binding 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74164

Tuberculist Genomic Region

78586 S1 RNA binding domain 1

Details for - - S1 RNA binding domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78586

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ISL2_01_M01328 0.137931 0.0000641

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000000018 AANAAAANAAAA NA 66000 AAACAMAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.11 GCGGAA Spic.1, Sfpi1.3 1.22 CGAAAGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.48 CGCGGA NA NA 0.7 CGCMGTGT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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