TargetScan_140 megaCluster: 10 Residual: 0.23

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_140 10 0.23 12 0 0.829783 0.003

Members

Displaying 1 - 22 of 22
104776 aldehyde dehydrogenase family 6, subfamily A1

Details for - - aldehyde dehydrogenase family 6, subfamily A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104776

Tuberculist Genomic Region

110749 chromatin assembly factor 1, subunit B (p60)

Details for - - chromatin assembly factor 1, subunit B (p60)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110749

Tuberculist Genomic Region

12649 checkpoint kinase 1

Details for - - checkpoint kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12649

Tuberculist Genomic Region

16774 laminin, alpha 3

Details for - - laminin, alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16774

Tuberculist Genomic Region

17217 minichromosome maintenance deficient 4 homolog (S. cerevisiae)

Details for - - minichromosome maintenance deficient 4 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17217

Tuberculist Genomic Region

20503 solute carrier family 16 (monocarboxylic acid transporters), member 7

Details for - - solute carrier family 16 (monocarboxylic acid transporters), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20503

Tuberculist Genomic Region

27405 ATP-binding cassette, sub-family G (WHITE), member 3

Details for - - ATP-binding cassette, sub-family G (WHITE), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27405

Tuberculist Genomic Region

60411 centromere protein K

Details for - - centromere protein K

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60411

Tuberculist Genomic Region

68318 anterior pharynx defective 1c homolog (C. elegans)

Details for - - anterior pharynx defective 1c homolog (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68318

Tuberculist Genomic Region

72503 RIKEN cDNA 2610507B11 gene

Details for RP23-185A18.9 - RIKEN cDNA 2610507B11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72503

Tuberculist Genomic Region

110173 mannosidase, beta A, lysosomal

Details for - - mannosidase, beta A, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110173

Tuberculist Genomic Region

12144 Bloom syndrome, RecQ helicase-like

Details for - - Bloom syndrome, RecQ helicase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12144

Tuberculist Genomic Region

12763 cytidine monophospho-N-acetylneuraminic acid hydroxylase

Details for RP23-80C18.1 - cytidine monophospho-N-acetylneuraminic acid hydroxylase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12763

Tuberculist Genomic Region

14235 forkhead box M1

Details for - - forkhead box M1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14235

Tuberculist Genomic Region

19376 RAB34, member of RAS oncogene family

Details for RP23-185A18.5 - RAB34, member of RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19376

Tuberculist Genomic Region

20148 dehydrogenase/reductase (SDR family) member 3

Details for RP23-133N19.1 - dehydrogenase/reductase (SDR family) member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20148

Tuberculist Genomic Region

209737 kinesin family member 15

Details for - - kinesin family member 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209737

Tuberculist Genomic Region

211896 DEP domain containing 7

Details for RP24-297H17.8 - DEP domain containing 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211896

Tuberculist Genomic Region

26754 COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)

Details for - - COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26754

Tuberculist Genomic Region

56207 ubiquitin carboxyl-terminal esterase L5

Details for - - ubiquitin carboxyl-terminal esterase L5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56207

Tuberculist Genomic Region

67041 3-oxoacid CoA transferase 1

Details for - - 3-oxoacid CoA transferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67041

Tuberculist Genomic Region

72512 transmembrane protein 173

Details for - - transmembrane protein 173

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72512

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
KLF16_C2H2_DBD_monomeric_11_1 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
14 GWAAANACANAA NA 6300 TNCTAWTCTTG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.32 GCGCGA Zfp161.2, E2F2.1, E2F3.1, Zfp161.1 1.36 CCATGTCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.53 ATTTGNNC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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