TargetScan_141 megaCluster: 3 Residual: 0.36

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_141 3 0.36 13 0 0.773786 0.101

Members

Displaying 1 - 22 of 22
100503626 predicted gene, 19803

Details for - - predicted gene, 19803

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503626

Tuberculist Genomic Region

100504054 predicted gene, 20035

Details for - - predicted gene, 20035

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504054

Tuberculist Genomic Region

15466 histamine receptor H2

Details for - - histamine receptor H2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15466

Tuberculist Genomic Region

20354 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

Details for - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20354

Tuberculist Genomic Region

223672 apolipoprotein L 9a

Details for - - apolipoprotein L 9a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223672

Tuberculist Genomic Region

230073 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

Details for RP23-9F23.2 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230073

Tuberculist Genomic Region

237887 schlafen 10, pseudogene

Details for - - schlafen 10, pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237887

Tuberculist Genomic Region

433638 RIKEN cDNA I830077J02 gene

Details for - - RIKEN cDNA I830077J02 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 433638

Tuberculist Genomic Region

56619 C-type lectin domain family 4, member e

Details for - - C-type lectin domain family 4, member e

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56619

Tuberculist Genomic Region

623121 pyrin domain containing 4

Details for - - pyrin domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 623121

Tuberculist Genomic Region

66607 membrane-spanning 4-domains, subfamily A, member 4D

Details for - - membrane-spanning 4-domains, subfamily A, member 4D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66607

Tuberculist Genomic Region

100503664 predicted gene 13012

Details for - - predicted gene 13012

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503664

Tuberculist Genomic Region

100504323 predicted gene, 20172

Details for - - predicted gene, 20172

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504323

Tuberculist Genomic Region

16634 killer cell lectin-like receptor, subfamily A, member 3

Details for - - killer cell lectin-like receptor, subfamily A, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16634

Tuberculist Genomic Region

16913 proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)

Details for - - proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16913

Tuberculist Genomic Region

171254 vomeronasal 1 receptor 198

Details for RP23-124G18.5 - vomeronasal 1 receptor 198

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 171254

Tuberculist Genomic Region

21847 Kruppel-like factor 10

Details for - - Kruppel-like factor 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21847

Tuberculist Genomic Region

258025 olfactory receptor 1211

Details for RP23-260B13.3 - olfactory receptor 1211

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258025

Tuberculist Genomic Region

258304 olfactory receptor 498

Details for - - olfactory receptor 498

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258304

Tuberculist Genomic Region

26360 angiopoietin-like 2

Details for RP23-35J6.3 - angiopoietin-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26360

Tuberculist Genomic Region

67844 RAB32, member RAS oncogene family

Details for - - RAB32, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67844

Tuberculist Genomic Region

723849 microRNA 34b

Details for - - microRNA 34b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723849

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
SRY_MA0084.1 0.214286 0.00000927

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.069 AAAKGATGMAWA NA 10 WAAATAANAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.53 CGACGT Gmeb1.1 0.8 TNNAAACT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.72 CKGTAC NA NA 0.94 GCACAATC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments