TargetScan_145 megaCluster: 10 Residual: 0.33

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_145 10 0.33 5 0 0.537036 1

Members

Displaying 1 - 25 of 25
13852 syntaxin 2

Details for - - syntaxin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13852

Tuberculist Genomic Region

14788 G protein-coupled receptor 162

Details for - - G protein-coupled receptor 162

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14788

Tuberculist Genomic Region

18669 ATP-binding cassette, sub-family B (MDR/TAP), member 1B

Details for - - ATP-binding cassette, sub-family B (MDR/TAP), member 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18669

Tuberculist Genomic Region

19296 plasmacytoma variant translocation 1

Details for - - plasmacytoma variant translocation 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19296

Tuberculist Genomic Region

20305 chemokine (C-C motif) ligand 6

Details for RP23-320E6.4 - chemokine (C-C motif) ligand 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20305

Tuberculist Genomic Region

224624 Rab40c, member RAS oncogene family

Details for - - Rab40c, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224624

Tuberculist Genomic Region

26412 mitogen-activated protein kinase kinase kinase kinase 2

Details for - - mitogen-activated protein kinase kinase kinase kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26412

Tuberculist Genomic Region

269470 WD repeat domain 3

Details for - - WD repeat domain 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269470

Tuberculist Genomic Region

277692 ribosomal protein S19, pseudogene 3

Details for RP23-406N5.1 - ribosomal protein S19, pseudogene 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277692

Tuberculist Genomic Region

329154 ankyrin repeat domain 44

Details for - - ankyrin repeat domain 44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329154

Tuberculist Genomic Region

66094 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Details for - - LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66094

Tuberculist Genomic Region

67891 ribosomal protein L4

Details for - - ribosomal protein L4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67891

Tuberculist Genomic Region

20849 breast cancer 2

Details for - - breast cancer 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12190

Tuberculist Genomic Region

319554 immunoglobulin heavy constant mu

Details for - - immunoglobulin heavy constant mu

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16019

Tuberculist Genomic Region

380840 signal transducer and activator of transcription 4

Details for - - signal transducer and activator of transcription 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20849

Tuberculist Genomic Region

52443 isopentenyl-diphosphate delta isomerase

Details for - - isopentenyl-diphosphate delta isomerase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319554

Tuberculist Genomic Region

53322 LYR motif containing 4

Details for - - LYR motif containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380840

Tuberculist Genomic Region

54131 mitochondrial ribosomal protein L48

Details for - - mitochondrial ribosomal protein L48

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52443

Tuberculist Genomic Region

613254 nucleobindin 2

Details for - - nucleobindin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53322

Tuberculist Genomic Region

70998 interferon regulatory factor 3

Details for - - interferon regulatory factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54131

Tuberculist Genomic Region

72091 expressed sequence AA465934

Details for - - expressed sequence AA465934

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 613254

Tuberculist Genomic Region

76302 PHD finger protein 6

Details for - - PHD finger protein 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70998

Tuberculist Genomic Region

83701 small nucleolar RNA host gene (non-protein coding) 7

Details for - - small nucleolar RNA host gene (non-protein coding) 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72091

Tuberculist Genomic Region

Details for - - PEST proteolytic signal containing nuclear protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76302

Tuberculist Genomic Region

Details for - - serrate RNA effector molecule homolog (Arabidopsis)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83701

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00022 AAANNAANAAAA NA 5.2 CTCYYTTCTCT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.24 CCGCGA NA 1.38 GCGCGGNT Klf7.1, Zfp161.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.66 GAGCGT NA NA 1.02 GGAGCGTG mmu-mir-574-3p 7mer_m8

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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