TargetScan_150 megaCluster: 2 Residual: 0.22 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_150	2	0.22	13	0.506	0.858188	0.001

Members

Displaying 1 - 20 of 20

100198 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) Details for RP23-169H13.3 - hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100198 Tuberculist Genomic Region	229898 guanylate binding protein 5 Details for - - guanylate binding protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229898 Tuberculist Genomic Region
29813 zinc finger protein 385A Details for - - zinc finger protein 385A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 29813 Tuberculist Genomic Region	100038602 predicted gene 10865 Details for - - predicted gene 10865 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100038602 Tuberculist Genomic Region
100502793 predicted gene, 19375 Details for - - predicted gene, 19375 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100502793 Tuberculist Genomic Region	142980 toll-like receptor 3 Details for - - toll-like receptor 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 142980 Tuberculist Genomic Region
14469 guanylate binding protein 2 Details for - - guanylate binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14469 Tuberculist Genomic Region	17096 Yamaguchi sarcoma viral (v-yes-1) oncogene homolog Details for RP23-49A12.2 - Yamaguchi sarcoma viral (v-yes-1) oncogene homolog GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17096 Tuberculist Genomic Region
18032 nuclear factor I/X Details for - - nuclear factor I/X GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18032 Tuberculist Genomic Region	21417 zinc finger E-box binding homeobox 1 Details for - - zinc finger E-box binding homeobox 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21417 Tuberculist Genomic Region
22035 tumor necrosis factor (ligand) superfamily, member 10 Details for - - tumor necrosis factor (ligand) superfamily, member 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22035 Tuberculist Genomic Region	226089 RIKEN cDNA C030046E11 gene Details for - - RIKEN cDNA C030046E11 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226089 Tuberculist Genomic Region
234311 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 234311 Tuberculist Genomic Region	245126 T cell-interacting, activating receptor on myeloid cells 1 Details for - - T cell-interacting, activating receptor on myeloid cells 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 245126 Tuberculist Genomic Region
547253 poly (ADP-ribose) polymerase family, member 14 Details for - - poly (ADP-ribose) polymerase family, member 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 547253 Tuberculist Genomic Region	667373 predicted gene 14446 Details for - - predicted gene 14446 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 667373 Tuberculist Genomic Region
67138 hect domain and RLD 6 Details for - - hect domain and RLD 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67138 Tuberculist Genomic Region	71982 sorting nexin 10 Details for - - sorting nexin 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71982 Tuberculist Genomic Region
74704 RIKEN cDNA 4930518I15 gene Details for - - RIKEN cDNA 4930518I15 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74704 Tuberculist Genomic Region	80285 poly (ADP-ribose) polymerase family, member 9 Details for - - poly (ADP-ribose) polymerase family, member 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80285 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
IRF4_IRF_full_dimeric_15_1	0.588235	0.0000000000171

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.05	GTTTCANTTTY	IRF1_MA0050.1, IRF2_MA0051.1, STAT1_MA0137.1, V$ISRE_01_M00258, V$IRF_Q6_01_M00972, V$IRF2_Q6_M01882, V$IRF1_Q6_01_M01881, V$IRF_Q6_M00772, V$IRF1_01_M00062, V$ICSBP_Q6_M00699, V$IRF2_01_M00063, V$ISGF3G_03_M02771, V$IRF3_05_M02767, V$IRF7_01_M00453, V$BLIMP1_Q6_M01066, V$IRF1_Q6_M00747, Isgf3g.1, Irf3.1, PRDM1_C2H2_full_monomeric-or-dimeric_15_1, IRF7_IRF_DBD_dimeric_14_1, IRF3_IRF_full_trimeric_21_1	1.7	CACTTTNTTTW	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.88	CGACGC	NA	1.03	CGMCGCGN	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.71	AACAAC	NA	NA	0.92	TGCSNCTC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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