TargetScan_171 megaCluster: 1 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_171 1 0.24 14 0.002 0.858727 0

Members

Displaying 1 - 36 of 36
104099 integrin alpha 9

Details for - - integrin alpha 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104099

Tuberculist Genomic Region

12457 CCR4 carbon catabolite repression 4-like (S. cerevisiae)

Details for - - CCR4 carbon catabolite repression 4-like (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12457

Tuberculist Genomic Region

14191 Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog

Details for RP23-125F21.1 - Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14191

Tuberculist Genomic Region

18413 oncostatin M

Details for RP23-453B22.1 - oncostatin M

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18413

Tuberculist Genomic Region

258265 olfactory receptor 1333

Details for - - olfactory receptor 1333

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258265

Tuberculist Genomic Region

382000 cDNA sequence AY761184

Details for - - cDNA sequence AY761184

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382000

Tuberculist Genomic Region

71795 phosphatidylinositol transfer protein, cytoplasmic 1

Details for RP23-317F9.8 - phosphatidylinositol transfer protein, cytoplasmic 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71795

Tuberculist Genomic Region

72054 cytochrome P450, family 4, subfamily f, polypeptide 18

Details for - - cytochrome P450, family 4, subfamily f, polypeptide 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72054

Tuberculist Genomic Region

100040233 predicted gene 10334

Details for - - predicted gene 10334

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100040233

Tuberculist Genomic Region

100503374 predicted gene, 17435

Details for - - predicted gene, 17435

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503374

Tuberculist Genomic Region

108900 family with sequence similarity 72, member A

Details for - - family with sequence similarity 72, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108900

Tuberculist Genomic Region

11910 activating transcription factor 3

Details for - - activating transcription factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11910

Tuberculist Genomic Region

16175 interleukin 1 alpha

Details for RP23-160G19.8 - interleukin 1 alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16175

Tuberculist Genomic Region

171249 vomeronasal 1 receptor 213

Details for RP23-277B9.6 - vomeronasal 1 receptor 213

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 171249

Tuberculist Genomic Region

17355 AF4/FMR2 family, member 1

Details for AL731554.2 - AF4/FMR2 family, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17355

Tuberculist Genomic Region

19073 serglycin

Details for - - serglycin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19073

Tuberculist Genomic Region

20557 schlafen 3

Details for RP23-381B19.1 - schlafen 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20557

Tuberculist Genomic Region

331476 predicted gene 5125

Details for - - predicted gene 5125

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 331476

Tuberculist Genomic Region

51902 ring finger protein 24

Details for RP23-387C21.6 - ring finger protein 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 51902

Tuberculist Genomic Region

621976 transmembrane protein 170B

Details for - - transmembrane protein 170B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 621976

Tuberculist Genomic Region

68567 cell growth regulator with EF hand domain 1

Details for - - cell growth regulator with EF hand domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68567

Tuberculist Genomic Region

69573 hypoxia inducible lipid droplet associated

Details for - - hypoxia inducible lipid droplet associated

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69573

Tuberculist Genomic Region

723828 microRNA 222

Details for - - microRNA 222

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723828

Tuberculist Genomic Region

72446 proline rich 5 like

Details for RP23-325I3.4 - proline rich 5 like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72446

Tuberculist Genomic Region

74120 zinc finger protein 263

Details for - - zinc finger protein 263

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74120

Tuberculist Genomic Region

77633 G1 to S phase transition pseudogene

Details for - - G1 to S phase transition pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77633

Tuberculist Genomic Region

19201 proline-serine-threonine phosphatase-interacting protein 2

Details for - - proline-serine-threonine phosphatase-interacting protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19201

Tuberculist Genomic Region

22350 ezrin

Details for - - ezrin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22350

Tuberculist Genomic Region

229694 expressed sequence AI504432

Details for - - expressed sequence AI504432

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229694

Tuberculist Genomic Region

80885 niacin receptor 1

Details for - - niacin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80885

Tuberculist Genomic Region

16648 karyopherin (importin) alpha 3

Details for - - karyopherin (importin) alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16648

Tuberculist Genomic Region

17857 myxovirus (influenza virus) resistance 1

Details for - - myxovirus (influenza virus) resistance 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17857

Tuberculist Genomic Region

17858 myxovirus (influenza virus) resistance 2

Details for - - myxovirus (influenza virus) resistance 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17858

Tuberculist Genomic Region

12515 CD69 antigen

Details for - - CD69 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12515

Tuberculist Genomic Region

192656 receptor (TNFRSF)-interacting serine-threonine kinase 2

Details for RP23-378L22.1 - receptor (TNFRSF)-interacting serine-threonine kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192656

Tuberculist Genomic Region

26570 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11

Details for - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26570

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF1_Q6_01_M01881 0.444444 0.00000268

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
4.5 TKTTTCTAANA NA 92 AACTGTNSNTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.65 CGCCGA NA 0.8 CGGCATGA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.55 GATCCG NA NA 0.52 TCAAAAGG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-135a 0.48 0.00000441

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